Wall clock time and date at job start Tue Mar 31 2020 18:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33320 * 126.10821 * 2 1 4 4 C 1.30850 * 109.68988 * 180.27276 * 3 2 1 5 5 N 1.34498 * 109.15997 * 359.76295 * 4 3 2 6 6 H 0.96999 * 126.47390 * 180.02562 * 5 4 3 7 7 C 1.36659 * 126.10561 * 179.87467 * 2 1 3 8 8 C 1.46761 * 126.84808 * 359.97438 * 7 2 1 9 9 O 1.21681 * 120.00506 * 256.31331 * 8 7 2 10 10 N 1.34779 * 119.99668 * 76.31587 * 8 7 2 11 11 C 1.46929 * 120.62897 * 354.79090 * 10 8 7 12 12 C 1.53619 * 108.54135 * 126.37506 * 11 10 8 13 13 C 1.53041 * 109.24696 * 54.85175 * 12 11 10 14 14 O 1.42901 * 109.46264 * 178.49042 * 13 12 11 15 15 C 1.42896 * 113.99997 * 270.07041 * 14 13 12 16 16 C 1.53947 * 113.74043 * 248.73965 * 15 14 13 17 17 N 1.47821 * 86.03455 * 222.08437 * 16 15 14 18 18 C 1.36935 * 134.45644 * 204.64212 * 17 16 15 19 19 H 1.07997 * 120.00571 * 179.86896 * 18 17 16 20 20 C 1.38821 * 119.99759 * 359.86942 * 18 17 16 21 21 N 1.31617 * 120.00225 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47141 * 89.99957 * 22 20 18 24 24 H 1.48497 * 109.47351 * 210.00040 * 22 20 18 25 25 H 1.48505 * 109.47290 * 330.00137 * 22 20 18 26 26 C 1.47580 * 91.05167 * 24.55169 * 17 16 15 27 27 C 1.53040 * 109.53824 * 298.51346 * 13 12 11 28 28 C 1.46922 * 120.63128 * 175.07397 * 10 8 7 29 29 H 1.09007 * 109.47289 * 270.12497 * 1 2 3 30 30 H 1.08999 * 109.47333 * 30.12518 * 1 2 3 31 31 H 1.08997 * 109.47080 * 150.12702 * 1 2 3 32 32 H 1.08000 * 125.42319 * 179.78293 * 4 3 2 33 33 H 1.09000 * 109.58473 * 246.20324 * 11 10 8 34 34 H 1.08991 * 109.58655 * 6.62468 * 11 10 8 35 35 H 1.09007 * 109.63336 * 294.85789 * 12 11 10 36 36 H 1.09004 * 109.43227 * 174.72290 * 12 11 10 37 37 H 1.09004 * 109.44432 * 58.52603 * 13 12 11 38 38 H 1.08999 * 112.94771 * 20.33540 * 15 14 13 39 39 H 1.08998 * 113.77215 * 336.34804 * 16 15 14 40 40 H 1.08996 * 113.76837 * 107.75063 * 16 15 14 41 41 H 0.96995 * 120.00108 * 180.02562 * 21 20 18 42 42 H 1.09002 * 113.76528 * 221.15063 * 26 17 16 43 43 H 1.08994 * 113.77365 * 89.75087 * 26 17 16 44 44 H 1.09000 * 109.49540 * 301.41011 * 27 13 12 45 45 H 1.09002 * 109.52407 * 181.32946 * 27 13 12 46 46 H 1.08998 * 109.58588 * 353.37077 * 28 10 8 47 47 H 1.09002 * 109.58901 * 113.64804 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7073 -0.0059 5 7 3.6121 -0.6362 -0.0046 6 1 4.4188 -1.1748 -0.0077 7 6 2.3123 -1.1041 0.0024 8 6 1.8821 -2.5072 0.0060 9 8 1.9424 -3.1596 1.0314 10 7 1.4201 -3.0733 -1.1266 11 6 1.2340 -2.2702 -2.3428 12 6 1.9925 -2.9460 -3.4952 13 6 1.5259 -4.3978 -3.6235 14 8 2.2032 -5.0208 -4.7168 15 6 1.5252 -4.8948 -5.9683 16 6 0.9583 -6.2226 -6.5025 17 7 1.4546 -5.7843 -7.8241 18 6 1.1122 -6.0677 -9.1194 19 1 1.6451 -5.5993 -9.9337 20 6 0.0801 -6.9570 -9.3858 21 7 -0.5697 -7.5274 -8.3935 22 14 -0.3874 -7.3431 -11.1526 23 1 0.4043 -8.5046 -11.6316 24 1 -1.8347 -7.6680 -11.2221 25 1 -0.1033 -6.1635 -12.0089 26 6 2.4650 -4.9173 -7.1875 27 6 1.8423 -5.1533 -2.3307 28 6 1.0873 -4.5037 -1.1667 29 1 -0.3634 0.0022 1.0277 30 1 -0.3634 0.8888 -0.5158 31 1 -0.3633 -0.8911 -0.5118 32 1 4.3970 1.3745 -0.0106 33 1 0.1726 -2.2133 -2.5842 34 1 1.6286 -1.2670 -2.1822 35 1 3.0632 -2.9245 -3.2912 36 1 1.7881 -2.4146 -4.4247 37 1 0.4510 -4.4190 -3.8027 38 1 0.8079 -4.0742 -5.9823 39 1 1.4659 -7.1053 -6.1133 40 1 -0.1276 -6.2931 -6.4410 41 1 -1.2906 -8.1491 -8.5796 42 1 2.5797 -3.9475 -7.6718 43 1 3.4160 -5.4156 -6.9998 44 1 2.9142 -5.1111 -2.1377 45 1 1.5313 -6.1932 -2.4310 46 1 1.3851 -4.9746 -0.2299 47 1 0.0137 -4.6252 -1.3115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093600749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:48 Heat of formation + Delta-G solvation = 14.354389 kcal Electronic energy + Delta-G solvation = -28949.461461 eV Core-core repulsion = 24941.348843 eV Total energy + Delta-G solvation = -4008.112619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.24965 -41.11405 -40.14998 -38.63254 -36.82717 -34.30162 -34.16564 -33.27814 -32.26248 -31.66215 -29.45622 -28.36941 -26.61639 -26.12476 -24.84302 -24.56440 -23.48235 -22.41297 -21.45408 -21.09008 -20.28463 -19.19030 -18.81408 -18.21057 -17.70399 -17.01308 -16.91223 -16.53553 -16.13094 -15.88476 -15.67884 -15.42006 -15.33404 -15.05923 -14.75054 -14.57989 -14.17023 -13.93824 -13.82274 -13.73232 -13.42810 -13.30695 -13.23265 -13.08623 -12.86678 -12.84700 -12.74600 -12.30874 -12.25087 -11.98633 -11.81670 -11.66451 -11.45684 -11.42799 -11.02242 -10.95571 -10.87948 -10.24211 -9.90412 -9.45143 -8.97807 -7.93071 -5.28138 0.63688 1.08800 1.45914 1.48182 1.56936 1.72666 2.00520 2.35902 2.41483 2.70882 3.26714 3.36386 3.44854 3.61481 3.66419 3.82206 3.88511 3.97772 4.06936 4.13112 4.16679 4.26385 4.29373 4.34920 4.46533 4.60008 4.72766 4.74530 4.76575 4.79993 4.81666 4.85950 4.91382 4.93377 4.96574 5.01670 5.11407 5.17989 5.21862 5.35091 5.38648 5.48819 5.55549 5.88159 6.11838 6.35496 6.45129 6.82706 6.88511 6.95115 7.56976 8.51751 9.24028 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.002208 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.320777 B =12679.311587 C =12998.296200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.049 3.951 3 N -0.527 5.527 4 C 0.225 3.775 5 N -0.537 5.537 6 H 0.437 0.563 7 C -0.094 4.094 8 C 0.600 3.400 9 O -0.569 6.569 10 N -0.592 5.592 11 C 0.113 3.887 12 C -0.146 4.146 13 C 0.082 3.918 14 O -0.382 6.382 15 C 0.073 3.927 16 C 0.143 3.857 17 N -0.639 5.639 18 C -0.236 4.236 19 H 0.088 0.912 20 C -0.068 4.068 21 N -0.954 5.954 22 Si 0.983 3.017 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.265 1.265 26 C 0.120 3.880 27 C -0.122 4.122 28 C 0.118 3.882 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.258 0.742 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.012 0.988 40 H 0.046 0.954 41 H 0.250 0.750 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 16.670 18.105 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 N -0.247 5.247 4 C -0.058 4.058 5 N -0.142 5.142 6 H 0.278 0.722 7 C -0.212 4.212 8 C 0.387 3.613 9 O -0.447 6.447 10 N -0.324 5.324 11 C -0.009 4.009 12 C -0.184 4.184 13 C 0.025 3.975 14 O -0.300 6.300 15 C 0.014 3.986 16 C 0.017 3.983 17 N -0.367 5.367 18 C -0.364 4.364 19 H 0.105 0.895 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.810 3.190 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.189 1.189 26 C -0.005 4.005 27 C -0.161 4.161 28 C -0.004 4.004 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.273 0.727 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.170 16.886 18.419 25.739 hybrid contribution 0.345 -1.785 -0.949 2.051 sum 6.516 15.101 17.470 23.994 Atomic orbital electron populations 1.20246 0.86343 1.03814 1.03170 1.21216 0.97316 0.86900 1.02995 1.70057 1.01832 1.30690 1.22166 1.25943 0.97661 0.81929 1.00297 1.43201 1.07184 1.08976 1.54823 0.72235 1.20392 0.86602 0.94080 1.20105 1.17112 0.76900 0.84374 0.82935 1.90828 1.56790 1.64250 1.32854 1.48141 1.63271 1.10305 1.10646 1.21982 1.01916 0.94802 0.82161 1.22438 1.01089 0.95635 0.99240 1.22259 0.96518 0.92175 0.86594 1.87938 1.48759 1.77013 1.16267 1.24382 0.94640 0.97475 0.82107 1.22684 0.97915 0.94100 0.83555 1.46078 1.37835 1.51490 1.01343 1.19421 1.13177 1.21356 0.82459 0.89460 1.25701 0.99024 0.99511 1.01840 1.70013 1.25339 1.33463 1.31428 0.85023 0.76695 0.78227 0.79042 1.21486 1.21867 1.18919 1.22862 0.92732 0.94662 0.90206 1.21904 1.01386 1.00352 0.92421 1.21691 1.00629 0.78816 0.99226 0.90760 0.89524 0.90647 0.72678 0.88797 0.88663 0.91302 0.89501 0.91350 0.88285 0.97004 0.93575 0.94135 0.91409 0.93953 0.91483 0.89618 0.88992 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.24 71.24 0.73 -0.47 16 2 C 0.05 0.92 6.37 41.96 0.27 1.19 16 3 N -0.53 -9.76 11.20 -187.60 -2.10 -11.87 16 4 C 0.23 2.55 13.01 180.33 2.35 4.89 16 5 N -0.54 -6.73 6.19 -188.05 -1.16 -7.89 16 6 H 0.44 3.26 8.96 -92.71 -0.83 2.43 16 7 C -0.09 -1.75 5.27 40.01 0.21 -1.54 16 8 C 0.60 13.14 7.18 86.47 0.62 13.76 16 9 O -0.57 -16.59 16.54 -4.29 -0.07 -16.66 16 10 N -0.59 -10.77 2.97 -822.70 -2.44 -13.21 16 11 C 0.11 1.70 5.89 86.51 0.51 2.21 16 12 C -0.15 -2.63 5.71 30.82 0.18 -2.45 16 13 C 0.08 1.89 2.45 30.62 0.07 1.96 16 14 O -0.38 -12.04 10.01 -148.98 -1.49 -13.53 16 15 C 0.07 2.64 4.29 31.26 0.13 2.77 16 16 C 0.14 6.91 7.36 86.44 0.64 7.55 16 17 N -0.64 -33.11 3.70 -720.74 -2.67 -35.78 16 18 C -0.24 -13.26 10.70 84.04 0.90 -12.36 16 19 H 0.09 4.64 7.83 -2.91 -0.02 4.61 16 20 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 21 N -0.95 -57.58 11.39 21.65 0.25 -57.33 16 22 Si 0.98 45.32 29.55 68.60 2.03 47.35 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 26 C 0.12 4.84 8.77 86.49 0.76 5.60 16 27 C -0.12 -2.52 5.73 30.67 0.18 -2.35 16 28 C 0.12 2.15 6.42 86.36 0.55 2.71 16 29 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.03 7.47 -2.39 -0.02 1.02 16 32 H 0.26 0.31 8.06 -2.91 -0.02 0.29 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.39 5.77 -2.39 -0.01 1.38 16 35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.07 1.55 7.74 -2.39 -0.02 1.53 16 38 H 0.10 3.25 7.80 -2.39 -0.02 3.23 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.05 2.44 7.16 -2.39 -0.02 2.43 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.09 1.85 7.03 -2.39 -0.02 1.83 16 47 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -77.67 383.46 1.05 -76.62 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.16 Total: 12.21 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 8.56 Total: 20.08 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -8.13 Total: -126.08 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.56 Total: -30.19 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -77.67 1.05 -76.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093600749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.974 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds