Wall clock time and date at job start Tue Mar 31 2020 19:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33228 * 126.02311 * 2 1 4 4 C 1.31528 * 109.76822 * 179.88705 * 3 2 1 5 5 O 1.35205 * 125.49761 * 180.15777 * 4 3 2 6 6 N 1.34945 * 109.01252 * 0.38025 * 4 3 2 7 7 H 0.97004 * 126.54518 * 179.78454 * 6 4 3 8 8 C 1.36727 * 126.02017 * 180.31336 * 2 1 3 9 9 C 1.46376 * 126.82304 * 0.02562 * 8 2 1 10 10 O 1.21728 * 120.00073 * 359.97438 * 9 8 2 11 11 N 1.34775 * 119.99694 * 180.02562 * 9 8 2 12 12 C 1.46501 * 119.99773 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46921 * 179.97438 * 12 11 9 14 14 C 1.53357 * 111.23041 * 297.62961 * 13 12 11 15 15 C 1.55534 * 105.83609 * 241.97364 * 14 13 12 16 16 C 1.54676 * 104.35359 * 334.35759 * 15 14 13 17 17 C 1.54576 * 111.31568 * 177.45251 * 13 12 11 18 18 H 1.09004 * 111.92447 * 18.72043 * 17 13 12 19 19 N 1.46889 * 107.37082 * 255.62372 * 17 13 12 20 20 C 1.36937 * 125.25183 * 181.66219 * 19 17 13 21 21 H 1.07993 * 120.00108 * 9.62063 * 20 19 17 22 22 C 1.38811 * 119.99810 * 189.63099 * 20 19 17 23 23 N 1.31617 * 120.00169 * 8.98565 * 22 20 19 24 24 Si 1.86798 * 119.99949 * 188.99374 * 22 20 19 25 25 H 1.48497 * 109.47590 * 94.38430 * 24 22 20 26 26 H 1.48503 * 109.47218 * 214.38910 * 24 22 20 27 27 H 1.48504 * 109.47071 * 334.38571 * 24 22 20 28 28 C 1.46734 * 109.49644 * 1.65559 * 19 17 13 29 29 C 1.53863 * 111.25795 * 61.01754 * 13 12 11 30 30 H 1.09007 * 109.46877 * 269.68742 * 1 2 3 31 31 H 1.08993 * 109.47300 * 149.69158 * 1 2 3 32 32 H 1.08995 * 109.47264 * 29.68236 * 1 2 3 33 33 H 0.96698 * 113.99564 * 270.26897 * 5 4 3 34 34 H 0.96991 * 120.00186 * 359.97438 * 11 9 8 35 35 H 1.08995 * 109.47136 * 299.99742 * 12 11 9 36 36 H 1.09000 * 109.47070 * 59.99799 * 12 11 9 37 37 H 1.09005 * 110.05638 * 1.97890 * 14 13 12 38 38 H 1.09000 * 110.05799 * 123.47506 * 14 13 12 39 39 H 1.09002 * 110.54357 * 215.54566 * 15 14 13 40 40 H 1.09005 * 110.23795 * 93.01711 * 15 14 13 41 41 H 1.09003 * 110.61571 * 278.65184 * 16 15 14 42 42 H 1.09005 * 110.75226 * 155.73101 * 16 15 14 43 43 H 0.97002 * 120.00335 * 180.02562 * 23 22 20 44 44 H 1.09003 * 110.04530 * 221.97000 * 28 19 17 45 45 H 1.09002 * 110.08865 * 100.53754 * 28 19 17 46 46 H 1.08998 * 110.57464 * 212.51496 * 29 13 12 47 47 H 1.08999 * 110.56822 * 335.38902 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5532 0.7094 0.0024 5 8 4.6150 1.5464 0.0062 6 7 3.6181 -0.6385 -0.0044 7 1 4.4243 -1.1779 -0.0073 8 6 2.3110 -1.1058 -0.0060 9 6 1.8792 -2.5044 -0.0142 10 8 0.6924 -2.7750 -0.0157 11 7 2.7957 -3.4926 -0.0190 12 6 2.3636 -4.8924 -0.0266 13 6 3.5915 -5.8052 -0.0316 14 6 4.4327 -5.5975 -1.2969 15 6 4.4230 -6.9629 -2.0418 16 6 4.1798 -8.0065 -0.9264 17 6 3.1842 -7.2952 0.0243 18 1 2.1449 -7.4444 -0.2684 19 7 3.4403 -7.7689 1.3910 20 6 3.2386 -9.0486 1.8348 21 1 3.0127 -9.8351 1.1301 22 6 3.3244 -9.3346 3.1904 23 7 3.4228 -8.3557 4.0646 24 14 3.3003 -11.1090 3.7738 25 1 4.6938 -11.5974 3.9310 26 1 2.5967 -11.1914 5.0790 27 1 2.5912 -11.9488 2.7753 28 6 3.9457 -6.6592 2.2072 29 6 4.4537 -5.5872 1.2240 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8871 -0.5186 32 1 -0.3633 0.8928 -0.5089 33 1 4.9233 1.7944 -0.8761 34 1 3.7414 -3.2770 -0.0175 35 1 1.7651 -5.0927 0.8620 36 1 1.7658 -5.0833 -0.9179 37 1 3.9935 -4.8131 -1.9133 38 1 5.4551 -5.3330 -1.0269 39 1 5.3823 -7.1402 -2.5280 40 1 3.6136 -6.9885 -2.7715 41 1 5.1098 -8.2360 -0.4062 42 1 3.7369 -8.9142 -1.3366 43 1 3.4831 -8.5556 5.0119 44 1 4.7638 -7.0033 2.8401 45 1 3.1437 -6.2516 2.8227 46 1 5.5080 -5.7446 0.9968 47 1 4.2933 -4.5884 1.6300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094441467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:49 Heat of formation + Delta-G solvation = 2.753955 kcal Electronic energy + Delta-G solvation = -29572.946885 eV Core-core repulsion = 25564.331234 eV Total energy + Delta-G solvation = -4008.615652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.54621 -40.05445 -38.87372 -37.72992 -35.00708 -34.12551 -33.42617 -31.81742 -31.03821 -30.35025 -28.27352 -27.01323 -26.73814 -24.59505 -23.89880 -23.02116 -21.57325 -20.38609 -20.17497 -19.94794 -19.73009 -18.46960 -17.90717 -16.98015 -16.59363 -16.09453 -15.60222 -15.25828 -14.98481 -14.87625 -14.49022 -14.09418 -13.90781 -13.56465 -13.39554 -13.20694 -12.93656 -12.81025 -12.63495 -12.54681 -12.24859 -11.93308 -11.67776 -11.37979 -11.23430 -10.80808 -10.77130 -10.75520 -10.62685 -10.38042 -10.35863 -10.24937 -10.11048 -9.91022 -9.87350 -9.70768 -9.62301 -9.11467 -8.61316 -8.58787 -6.82246 -5.75902 -3.09179 0.90421 2.05175 2.39395 3.04113 3.16851 3.38054 3.43926 3.45838 3.50422 4.45873 4.47263 4.66681 4.79695 4.87250 4.90969 4.95364 5.25861 5.44598 5.45800 5.47532 5.66972 5.67105 5.71442 5.75578 5.77906 5.82366 5.91896 5.97032 6.00219 6.08916 6.19964 6.20605 6.27941 6.31002 6.34083 6.37349 6.49277 6.58542 6.67507 6.77520 7.04250 7.15186 7.33634 7.48743 7.53379 7.59121 7.77782 8.06366 8.25040 9.19320 9.81140 10.46118 11.36286 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.002834 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.017438 B = 9877.808418 C =10294.926317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.113 3.887 3 N -0.489 5.489 4 C 0.409 3.591 5 O -0.441 6.441 6 N -0.555 5.555 7 H 0.422 0.578 8 C -0.079 4.079 9 C 0.593 3.407 10 O -0.519 6.519 11 N -0.720 5.720 12 C 0.141 3.859 13 C -0.082 4.082 14 C -0.112 4.112 15 C -0.122 4.122 16 C -0.131 4.131 17 C 0.173 3.827 18 H 0.049 0.951 19 N -0.594 5.594 20 C -0.227 4.227 21 H 0.076 0.924 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.178 3.822 29 C -0.135 4.135 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.406 0.594 34 H 0.392 0.608 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.058 0.942 45 H 0.030 0.970 46 H 0.060 0.940 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 15.840 -12.860 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.022 4.022 3 N -0.220 5.220 4 C 0.108 3.892 5 O -0.242 6.242 6 N -0.174 5.174 7 H 0.262 0.738 8 C -0.194 4.194 9 C 0.379 3.621 10 O -0.395 6.395 11 N -0.371 5.371 12 C 0.018 3.982 13 C -0.083 4.083 14 C -0.150 4.150 15 C -0.160 4.160 16 C -0.171 4.171 17 C 0.065 3.935 18 H 0.067 0.933 19 N -0.318 5.318 20 C -0.356 4.356 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.053 3.947 29 C -0.173 4.173 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.264 0.736 34 H 0.226 0.774 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.462 16.345 -12.021 20.439 hybrid contribution 1.655 -1.729 0.018 2.394 sum 4.118 14.616 -12.004 19.356 Atomic orbital electron populations 1.20360 0.85843 1.03919 1.03562 1.20959 0.96937 0.85820 0.98468 1.70287 0.98580 1.30415 1.22707 1.20165 0.87415 0.78682 1.02920 1.84855 1.43318 1.61554 1.34459 1.43712 1.08835 1.07928 1.56896 0.73849 1.20914 0.82860 0.95452 1.20169 1.16638 0.86064 0.82266 0.77166 1.90859 1.15759 1.82717 1.50193 1.45958 1.08986 1.07049 1.75075 1.21428 0.96396 0.77518 1.02817 1.21879 0.94351 0.96339 0.95739 1.22387 0.99218 0.97640 0.95706 1.22511 1.00543 0.95003 0.97913 1.22992 1.01010 0.97147 0.95935 1.21512 0.95862 0.88592 0.87510 0.93337 1.44306 1.75285 1.07128 1.05053 1.18995 1.41999 0.83576 0.90998 0.90590 1.24821 1.02222 0.97478 0.95779 1.69970 1.56194 1.29358 1.00917 0.86148 0.77491 0.84301 0.78102 1.21719 1.21803 1.20589 1.21036 0.97530 0.85315 0.90829 1.22792 0.98396 1.00020 0.96106 0.90304 0.88789 0.90894 0.73573 0.77393 0.90352 0.91208 0.92305 0.91915 0.92507 0.92286 0.91069 0.92598 0.93767 0.92364 0.95242 0.92108 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.87 36.00 0.36 -0.52 16 2 C 0.11 1.41 7.14 -82.54 -0.59 0.82 16 3 N -0.49 -6.10 11.22 -10.83 -0.12 -6.22 16 4 C 0.41 4.06 9.43 -89.60 -0.84 3.22 16 5 O -0.44 -3.12 13.62 -17.31 -0.24 -3.36 16 6 N -0.56 -4.88 6.12 -10.91 -0.07 -4.95 16 7 H 0.42 2.41 8.32 -40.82 -0.34 2.07 16 8 C -0.08 -0.94 7.08 -81.97 -0.58 -1.52 16 9 C 0.59 8.03 7.78 -12.99 -0.10 7.93 16 10 O -0.52 -8.63 14.80 5.16 0.08 -8.55 16 11 N -0.72 -8.69 4.64 -61.71 -0.29 -8.97 16 12 C 0.14 2.08 4.43 -4.04 -0.02 2.06 16 13 C -0.08 -1.24 0.53 -153.05 -0.08 -1.32 16 14 C -0.11 -1.35 5.75 -25.20 -0.14 -1.50 16 15 C -0.12 -1.58 6.88 -24.50 -0.17 -1.74 16 16 C -0.13 -2.21 6.23 -24.82 -0.15 -2.36 16 17 C 0.17 3.29 3.60 -65.86 -0.24 3.05 16 18 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 19 N -0.59 -14.16 2.99 -162.43 -0.49 -14.64 16 20 C -0.23 -6.08 9.92 -15.06 -0.15 -6.23 16 21 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 22 C -0.01 -0.17 5.41 -17.43 -0.09 -0.27 16 23 N -0.92 -26.45 10.58 55.49 0.59 -25.87 16 24 Si 0.91 21.80 29.56 -169.99 -5.03 16.77 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 C 0.18 4.07 5.35 -3.35 -0.02 4.05 16 29 C -0.13 -2.23 5.77 -25.72 -0.15 -2.38 16 30 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.09 1.11 6.46 -51.93 -0.34 0.77 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.41 0.62 9.06 45.56 0.41 1.03 16 34 H 0.39 3.73 6.80 -40.82 -0.28 3.46 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 38 H 0.06 0.71 7.28 -51.93 -0.38 0.33 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.06 1.50 7.16 -51.93 -0.37 1.13 16 45 H 0.03 0.76 7.83 -51.93 -0.41 0.36 16 46 H 0.06 0.96 7.42 -51.93 -0.39 0.58 16 47 H 0.06 0.82 7.03 -51.93 -0.36 0.46 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -33.65 374.01 -9.07 -42.72 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.17 Total: 4.13 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.97 Total: 3.30 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.37 Total: -60.65 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.16 Total: -11.91 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.65 -9.07 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094441467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.472 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds