Wall clock time and date at job start Tue Mar 31 2020 19:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33228 * 126.02311 * 2 1 4 4 C 1.31528 * 109.76822 * 179.88705 * 3 2 1 5 5 O 1.35205 * 125.49761 * 180.15777 * 4 3 2 6 6 N 1.34945 * 109.01252 * 0.38025 * 4 3 2 7 7 H 0.97004 * 126.54518 * 179.78454 * 6 4 3 8 8 C 1.36727 * 126.02017 * 180.31336 * 2 1 3 9 9 C 1.46376 * 126.82304 * 0.02562 * 8 2 1 10 10 O 1.21728 * 120.00073 * 359.97438 * 9 8 2 11 11 N 1.34775 * 119.99694 * 180.02562 * 9 8 2 12 12 C 1.46501 * 119.99773 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46921 * 179.97438 * 12 11 9 14 14 C 1.53357 * 111.23041 * 297.62961 * 13 12 11 15 15 C 1.55534 * 105.83609 * 241.97364 * 14 13 12 16 16 C 1.54676 * 104.35359 * 334.35759 * 15 14 13 17 17 C 1.54576 * 111.31568 * 177.45251 * 13 12 11 18 18 H 1.09004 * 111.92447 * 18.72043 * 17 13 12 19 19 N 1.46889 * 107.37082 * 255.62372 * 17 13 12 20 20 C 1.36937 * 125.25183 * 181.66219 * 19 17 13 21 21 H 1.07993 * 120.00108 * 9.62063 * 20 19 17 22 22 C 1.38811 * 119.99810 * 189.63099 * 20 19 17 23 23 N 1.31617 * 120.00169 * 8.98565 * 22 20 19 24 24 Si 1.86798 * 119.99949 * 188.99374 * 22 20 19 25 25 H 1.48497 * 109.47590 * 94.38430 * 24 22 20 26 26 H 1.48503 * 109.47218 * 214.38910 * 24 22 20 27 27 H 1.48504 * 109.47071 * 334.38571 * 24 22 20 28 28 C 1.46734 * 109.49644 * 1.65559 * 19 17 13 29 29 C 1.53863 * 111.25795 * 61.01754 * 13 12 11 30 30 H 1.09007 * 109.46877 * 269.68742 * 1 2 3 31 31 H 1.08993 * 109.47300 * 149.69158 * 1 2 3 32 32 H 1.08995 * 109.47264 * 29.68236 * 1 2 3 33 33 H 0.96698 * 113.99564 * 270.26897 * 5 4 3 34 34 H 0.96991 * 120.00186 * 359.97438 * 11 9 8 35 35 H 1.08995 * 109.47136 * 299.99742 * 12 11 9 36 36 H 1.09000 * 109.47070 * 59.99799 * 12 11 9 37 37 H 1.09005 * 110.05638 * 1.97890 * 14 13 12 38 38 H 1.09000 * 110.05799 * 123.47506 * 14 13 12 39 39 H 1.09002 * 110.54357 * 215.54566 * 15 14 13 40 40 H 1.09005 * 110.23795 * 93.01711 * 15 14 13 41 41 H 1.09003 * 110.61571 * 278.65184 * 16 15 14 42 42 H 1.09005 * 110.75226 * 155.73101 * 16 15 14 43 43 H 0.97002 * 120.00335 * 180.02562 * 23 22 20 44 44 H 1.09003 * 110.04530 * 221.97000 * 28 19 17 45 45 H 1.09002 * 110.08865 * 100.53754 * 28 19 17 46 46 H 1.08998 * 110.57464 * 212.51496 * 29 13 12 47 47 H 1.08999 * 110.56822 * 335.38902 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5532 0.7094 0.0024 5 8 4.6150 1.5464 0.0062 6 7 3.6181 -0.6385 -0.0044 7 1 4.4243 -1.1779 -0.0073 8 6 2.3110 -1.1058 -0.0060 9 6 1.8792 -2.5044 -0.0142 10 8 0.6924 -2.7750 -0.0157 11 7 2.7957 -3.4926 -0.0190 12 6 2.3636 -4.8924 -0.0266 13 6 3.5915 -5.8052 -0.0316 14 6 4.4327 -5.5975 -1.2969 15 6 4.4230 -6.9629 -2.0418 16 6 4.1798 -8.0065 -0.9264 17 6 3.1842 -7.2952 0.0243 18 1 2.1449 -7.4444 -0.2684 19 7 3.4403 -7.7689 1.3910 20 6 3.2386 -9.0486 1.8348 21 1 3.0127 -9.8351 1.1301 22 6 3.3244 -9.3346 3.1904 23 7 3.4228 -8.3557 4.0646 24 14 3.3003 -11.1090 3.7738 25 1 4.6938 -11.5974 3.9310 26 1 2.5967 -11.1914 5.0790 27 1 2.5912 -11.9488 2.7753 28 6 3.9457 -6.6592 2.2072 29 6 4.4537 -5.5872 1.2240 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8871 -0.5186 32 1 -0.3633 0.8928 -0.5089 33 1 4.9233 1.7944 -0.8761 34 1 3.7414 -3.2770 -0.0175 35 1 1.7651 -5.0927 0.8620 36 1 1.7658 -5.0833 -0.9179 37 1 3.9935 -4.8131 -1.9133 38 1 5.4551 -5.3330 -1.0269 39 1 5.3823 -7.1402 -2.5280 40 1 3.6136 -6.9885 -2.7715 41 1 5.1098 -8.2360 -0.4062 42 1 3.7369 -8.9142 -1.3366 43 1 3.4831 -8.5556 5.0119 44 1 4.7638 -7.0033 2.8401 45 1 3.1437 -6.2516 2.8227 46 1 5.5080 -5.7446 0.9968 47 1 4.2933 -4.5884 1.6300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094441467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:48 Heat of formation + Delta-G solvation = -24.678628 kcal Electronic energy + Delta-G solvation = -29574.136451 eV Core-core repulsion = 25564.331234 eV Total energy + Delta-G solvation = -4009.805218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.36239 -41.33109 -40.05718 -38.37367 -36.40521 -35.54662 -34.30700 -33.47733 -32.20546 -31.69197 -29.55307 -28.36181 -27.97142 -25.85274 -25.64591 -23.90256 -22.60986 -21.81173 -21.37712 -21.11792 -20.52841 -19.62461 -18.98015 -18.66626 -17.48275 -17.09131 -16.86520 -16.64326 -16.34817 -16.13557 -15.83369 -15.26732 -15.09173 -14.89570 -14.57258 -14.37200 -14.22775 -14.05645 -13.60895 -13.46856 -13.38984 -13.33544 -13.04961 -12.92005 -12.84417 -12.59683 -12.42109 -12.00301 -11.89205 -11.65367 -11.59312 -11.50060 -11.41582 -11.39264 -11.18453 -11.09383 -10.99034 -10.65026 -10.25117 -9.47882 -8.80744 -7.85794 -5.19633 0.05165 1.32281 1.44500 1.45074 1.54215 1.56150 1.99647 2.16833 2.49633 2.81579 3.31631 3.47598 3.63458 3.68463 3.69795 3.88803 3.95572 4.08816 4.24979 4.37166 4.42347 4.44711 4.50981 4.58667 4.66488 4.74845 4.82833 4.85461 4.92727 4.94767 4.96310 5.02105 5.15311 5.15774 5.24226 5.32742 5.37911 5.45528 5.46912 5.53013 5.61528 5.69115 5.78213 5.81063 6.23730 6.33780 6.67440 6.69572 7.04662 7.12667 7.83252 8.45877 9.25028 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.002834 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.017438 B = 9877.808418 C =10294.926317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.101 3.899 3 N -0.520 5.520 4 C 0.428 3.572 5 O -0.440 6.440 6 N -0.538 5.538 7 H 0.438 0.562 8 C -0.090 4.090 9 C 0.595 3.405 10 O -0.556 6.556 11 N -0.705 5.705 12 C 0.152 3.848 13 C -0.067 4.067 14 C -0.102 4.102 15 C -0.112 4.112 16 C -0.126 4.126 17 C 0.157 3.843 18 H 0.036 0.964 19 N -0.612 5.612 20 C -0.231 4.231 21 H 0.078 0.922 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.971 3.029 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.268 1.268 28 C 0.184 3.816 29 C -0.118 4.118 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.433 0.567 34 H 0.409 0.591 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.245 0.755 44 H 0.020 0.980 45 H -0.014 1.014 46 H 0.079 0.921 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 17.288 -15.484 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 N -0.252 5.252 4 C 0.125 3.875 5 O -0.245 6.245 6 N -0.158 5.158 7 H 0.281 0.719 8 C -0.206 4.206 9 C 0.383 3.617 10 O -0.435 6.435 11 N -0.357 5.357 12 C 0.029 3.971 13 C -0.068 4.068 14 C -0.139 4.139 15 C -0.149 4.149 16 C -0.165 4.165 17 C 0.050 3.950 18 H 0.053 0.947 19 N -0.336 5.336 20 C -0.360 4.360 21 H 0.096 0.904 22 C -0.259 4.259 23 N -0.598 5.598 24 Si 0.800 3.200 25 H -0.214 1.214 26 H -0.226 1.226 27 H -0.193 1.193 28 C 0.059 3.941 29 C -0.156 4.156 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.296 0.704 34 H 0.245 0.755 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.004 0.996 46 H 0.098 0.902 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.530 17.799 -14.718 23.536 hybrid contribution 1.036 -2.122 0.826 2.502 sum 5.566 15.677 -13.892 21.673 Atomic orbital electron populations 1.20335 0.85676 1.04028 1.03477 1.21185 0.97526 0.86264 0.98380 1.70273 0.99790 1.30752 1.24384 1.20201 0.87480 0.79183 1.00598 1.84829 1.42067 1.60797 1.36854 1.43512 1.08413 1.07748 1.56142 0.71911 1.20499 0.84115 0.94196 1.21741 1.16810 0.85599 0.82997 0.76329 1.90845 1.17399 1.83374 1.51853 1.45684 1.09744 1.05617 1.74636 1.21118 0.95889 0.78925 1.01211 1.21757 0.94504 0.93618 0.96956 1.22377 0.99786 0.98045 0.93716 1.22469 1.02316 0.93504 0.96648 1.22819 0.98949 0.98134 0.96623 1.21820 0.95946 0.91782 0.85461 0.94672 1.44582 1.75303 1.06574 1.07184 1.19337 1.40370 0.85179 0.91155 0.90448 1.25599 1.03128 1.01090 0.96125 1.70185 1.58042 1.31050 1.00568 0.85161 0.77353 0.80214 0.77251 1.21445 1.22568 1.19305 1.20789 0.94845 0.86746 0.91721 1.22645 0.99356 0.98616 0.94964 0.90460 0.89850 0.89555 0.70417 0.75455 0.94403 0.90648 0.89598 0.89763 0.90225 0.90974 0.93087 0.93226 0.94627 0.96170 0.99614 0.90209 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 9.87 71.23 0.70 -1.00 16 2 C 0.10 2.43 7.14 41.99 0.30 2.73 16 3 N -0.52 -12.04 11.22 -301.68 -3.38 -15.43 16 4 C 0.43 7.25 9.43 179.99 1.70 8.95 16 5 O -0.44 -4.67 13.62 -84.86 -1.16 -5.82 16 6 N -0.54 -7.83 6.12 -300.14 -1.84 -9.66 16 7 H 0.44 3.25 8.32 -92.71 -0.77 2.48 16 8 C -0.09 -1.98 7.08 39.80 0.28 -1.70 16 9 C 0.60 15.47 7.78 86.36 0.67 16.14 16 10 O -0.56 -18.61 14.80 -4.44 -0.07 -18.68 16 11 N -0.71 -15.54 4.64 -467.36 -2.17 -17.71 16 12 C 0.15 4.35 4.43 86.38 0.38 4.73 16 13 C -0.07 -1.91 0.53 -51.23 -0.03 -1.94 16 14 C -0.10 -1.99 5.75 31.59 0.18 -1.81 16 15 C -0.11 -2.43 6.88 32.04 0.22 -2.21 16 16 C -0.13 -4.06 6.23 31.83 0.20 -3.86 16 17 C 0.16 5.94 3.60 46.12 0.17 6.10 16 18 H 0.04 1.43 7.93 -2.38 -0.02 1.41 16 19 N -0.61 -30.22 2.99 -667.79 -1.99 -32.21 16 20 C -0.23 -12.76 9.92 84.03 0.83 -11.93 16 21 H 0.08 4.14 7.84 -2.91 -0.02 4.12 16 22 C -0.07 -3.78 5.41 84.86 0.46 -3.32 16 23 N -0.95 -57.58 10.58 21.65 0.23 -57.35 16 24 Si 0.97 46.14 29.56 68.60 2.03 48.17 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 26 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 28 C 0.18 8.81 5.35 86.70 0.46 9.27 16 29 C -0.12 -3.75 5.77 31.25 0.18 -3.57 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.08 2.00 6.46 -2.39 -0.02 1.98 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.43 -0.43 9.06 -74.06 -0.67 -1.10 16 34 H 0.41 6.26 6.80 -92.71 -0.63 5.63 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 1.32 7.51 -2.38 -0.02 1.30 16 38 H 0.08 1.39 7.28 -2.39 -0.02 1.37 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.05 1.85 8.06 -2.39 -0.02 1.83 16 42 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.02 1.09 7.16 -2.39 -0.02 1.07 16 45 H -0.01 -0.79 7.83 -2.39 -0.02 -0.80 16 46 H 0.08 2.30 7.42 -2.39 -0.02 2.28 16 47 H 0.08 2.12 7.03 -2.39 -0.02 2.11 16 Total: -1.00 -78.62 374.01 -2.68 -81.30 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -1.04 Total: 10.81 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.71 Total: 16.59 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -9.16 Total: -132.36 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.22 Total: -24.50 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -78.62 -2.68 -81.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094441467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.620 kcal (2) G-P(sol) polarization free energy of solvation -78.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds