Wall clock time and date at job start Tue Mar 31 2020 18:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34488 * 126.83559 * 2 1 4 4 N 1.36451 * 108.85551 * 180.25217 * 3 2 1 5 5 H 0.97002 * 124.85185 * 179.72845 * 4 3 2 6 6 C 1.34653 * 110.29949 * 359.75311 * 4 3 2 7 7 C 1.36772 * 108.39829 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94593 * 179.97438 * 7 6 4 9 9 O 1.21625 * 120.00201 * 180.02562 * 8 7 6 10 10 N 1.34772 * 119.99768 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00059 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46900 * 113.61428 * 219.93557 * 14 13 12 16 16 C 1.46895 * 110.99924 * 203.46824 * 15 14 13 17 17 C 1.50700 * 109.47106 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00101 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00188 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00693 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99366 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00595 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99765 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00044 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46971 * 90.00384 * 24 22 20 26 26 H 1.48500 * 109.47214 * 210.00448 * 24 22 20 27 27 H 1.48501 * 109.46973 * 330.00376 * 24 22 20 28 28 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 29 29 H 1.08998 * 109.47023 * 270.15189 * 1 2 3 30 30 H 1.09011 * 109.46948 * 30.14160 * 1 2 3 31 31 H 1.08991 * 109.47507 * 150.14510 * 1 2 3 32 32 H 1.07999 * 125.57631 * 0.04518 * 3 2 1 33 33 H 1.07997 * 125.80582 * 180.02562 * 6 4 3 34 34 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 36 36 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 37 37 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 38 38 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 39 39 H 1.09000 * 113.69133 * 254.54111 * 13 12 11 40 40 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 41 41 H 1.00902 * 110.99925 * 79.51829 * 15 14 13 42 42 H 1.08994 * 109.47448 * 300.00310 * 16 15 14 43 43 H 1.09001 * 109.47145 * 60.00387 * 16 15 14 44 44 H 0.97006 * 119.99894 * 359.97438 * 19 17 16 45 45 H 0.97003 * 119.99901 * 179.97438 * 23 22 20 46 46 H 1.08992 * 113.61675 * 140.02412 * 28 14 13 47 47 H 1.09000 * 113.60973 * 270.92699 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2412 -0.0106 6 6 3.6656 -0.6902 -0.0040 7 6 2.3864 -1.1741 0.0035 8 6 1.9748 -2.5880 0.0073 9 8 0.7936 -2.8776 0.0135 10 7 2.9072 -3.5612 0.0037 11 6 2.4979 -4.9678 0.0080 12 6 3.7404 -5.8606 0.0033 13 6 3.4222 -7.3598 0.1301 14 6 4.5322 -7.6027 -0.9061 15 7 4.2016 -8.6423 -1.8899 16 6 5.4191 -9.2210 -2.4736 17 6 5.0408 -10.2806 -3.4762 18 8 3.8720 -10.5289 -3.6844 19 7 6.0013 -10.9524 -4.1415 20 6 5.6573 -11.9160 -5.0540 21 1 4.6165 -12.1370 -5.2394 22 6 6.6475 -12.6082 -5.7403 23 7 6.3176 -13.5321 -6.6146 24 14 8.4476 -12.2253 -5.4202 25 1 8.9502 -13.0908 -4.3232 26 1 9.2349 -12.4812 -6.6530 27 1 8.5886 -10.7994 -5.0299 28 6 4.2706 -6.1731 -1.4089 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8888 -0.5161 31 1 -0.3634 -0.8912 -0.5115 32 1 1.9869 2.1059 0.0007 33 1 4.5663 -1.2861 -0.0071 34 1 3.8493 -3.3303 -0.0009 35 1 1.8983 -5.1745 -0.8785 36 1 1.9076 -5.1718 0.9014 37 1 4.5105 -5.5178 0.6943 38 1 2.4270 -7.6265 -0.2255 39 1 3.6451 -7.7732 1.1138 40 1 5.5199 -7.7364 -0.4647 41 1 3.5932 -8.2796 -2.6085 42 1 5.9911 -8.4380 -2.9713 43 1 6.0241 -9.6668 -1.6840 44 1 6.9361 -10.7535 -3.9753 45 1 7.0088 -14.0151 -7.0940 46 1 5.1785 -5.6278 -1.6665 47 1 3.5069 -6.1160 -2.1845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100976439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:08 Heat of formation + Delta-G solvation = -6.175223 kcal Electronic energy + Delta-G solvation = -26988.286032 eV Core-core repulsion = 22979.283183 eV Total energy + Delta-G solvation = -4009.002850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57728 -39.89007 -38.90763 -38.17918 -35.05151 -34.06762 -33.24725 -32.77376 -31.63989 -30.57357 -28.07114 -26.88885 -26.34724 -25.77939 -23.95114 -23.08988 -21.58748 -20.45840 -20.03785 -19.45321 -19.17290 -18.71013 -18.25532 -16.61318 -16.28469 -15.98297 -15.61113 -15.52768 -15.10088 -14.81345 -14.60833 -14.38817 -14.25283 -13.91477 -13.74534 -13.46133 -13.29687 -12.98201 -12.94128 -12.66945 -12.61509 -12.54288 -12.44094 -12.18123 -11.81796 -11.71061 -11.63855 -11.17581 -11.07199 -10.68314 -10.59806 -10.47726 -9.98004 -9.95327 -9.56555 -9.29336 -8.94809 -8.69287 -8.56090 -8.17794 -8.06228 -6.30202 -3.81571 1.39099 2.02308 2.74677 3.01989 3.05886 3.06792 3.14783 3.34759 3.75414 4.09475 4.13081 4.36366 4.37721 4.43133 4.63915 4.64869 4.69596 4.78212 4.94695 5.00411 5.08691 5.21398 5.24274 5.27098 5.41557 5.51225 5.59269 5.59561 5.64797 5.68553 5.72383 5.78312 5.80952 5.91503 5.94569 5.95501 6.03730 6.21854 6.33205 6.41450 6.48904 6.97659 7.18510 7.37608 7.58949 7.61600 8.15871 8.16303 8.60881 8.96145 9.43488 9.84114 10.83003 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.001608 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.878256 B =17412.147003 C =17806.932215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.028 4.028 4 N -0.550 5.550 5 H 0.418 0.582 6 C 0.046 3.954 7 C -0.227 4.227 8 C 0.586 3.414 9 O -0.542 6.542 10 N -0.729 5.729 11 C 0.133 3.867 12 C -0.124 4.124 13 C -0.116 4.116 14 C 0.068 3.932 15 N -0.657 5.657 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.166 4.166 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.395 0.605 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.353 0.647 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.065 0.935 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 31.162 17.068 35.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.155 4.155 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.091 4.091 7 C -0.238 4.238 8 C 0.375 3.625 9 O -0.419 6.419 10 N -0.381 5.381 11 C 0.010 3.990 12 C -0.143 4.143 13 C -0.155 4.155 14 C -0.043 4.043 15 N -0.289 5.289 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.446 6.446 19 N -0.231 5.231 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.205 4.205 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.229 0.771 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.174 0.826 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.814 30.172 17.210 34.745 hybrid contribution 2.889 1.281 -0.490 3.198 sum 2.075 31.453 16.720 35.681 Atomic orbital electron populations 1.20204 0.89231 1.02706 1.02014 1.20595 0.95741 0.90330 1.04826 1.21606 0.82388 0.99301 1.12203 1.41492 1.08382 1.06684 1.57796 0.74589 1.21907 0.98475 0.83956 1.04766 1.20413 0.92701 0.92907 1.17768 1.17415 0.85415 0.84021 0.75692 1.90761 1.17221 1.83737 1.50227 1.45854 1.09347 1.06325 1.76551 1.21358 0.96278 0.78843 1.02566 1.22702 0.97341 0.96050 0.98216 1.23044 1.00467 0.92500 0.99492 1.23003 0.98608 0.88231 0.94461 1.60004 1.15353 1.33990 1.19529 1.21738 0.92638 0.96678 0.97437 1.19760 0.86459 0.85503 0.84805 1.90571 1.18256 1.68290 1.67476 1.42211 1.06864 1.35668 1.38340 1.19443 0.97100 1.11733 1.15106 0.86284 1.25038 0.98418 0.96312 0.96416 1.69625 1.33815 1.23364 1.25357 0.86663 0.85202 0.78571 0.78879 1.19611 1.20217 1.19575 1.23903 1.01406 0.98611 0.96570 0.91793 0.92343 0.90230 0.81375 0.81204 0.77108 0.91126 0.91332 0.88819 0.89030 0.91052 0.88658 0.82587 0.93809 0.89541 0.79726 0.91636 0.91643 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.97 36.00 0.36 -0.38 16 2 C -0.11 -0.98 6.35 -102.54 -0.65 -1.63 16 3 C -0.03 -0.16 11.82 -16.82 -0.20 -0.36 16 4 N -0.55 -2.29 5.90 -12.85 -0.08 -2.36 16 5 H 0.42 0.29 8.96 -40.82 -0.37 -0.08 16 6 C 0.05 0.25 11.40 -16.84 -0.19 0.06 16 7 C -0.23 -2.11 6.29 -103.35 -0.65 -2.76 16 8 C 0.59 6.65 7.81 -12.60 -0.10 6.55 16 9 O -0.54 -8.23 15.32 5.26 0.08 -8.15 16 10 N -0.73 -6.12 5.55 -61.43 -0.34 -6.46 16 11 C 0.13 1.21 5.51 -4.04 -0.02 1.19 16 12 C -0.12 -0.95 3.76 -89.67 -0.34 -1.28 16 13 C -0.12 -1.12 7.44 -25.92 -0.19 -1.31 16 14 C 0.07 0.73 4.16 -66.90 -0.28 0.45 16 15 N -0.66 -9.95 6.24 -107.13 -0.67 -10.62 16 16 C 0.05 0.78 6.02 -4.98 -0.03 0.75 16 17 C 0.45 10.22 7.82 -10.99 -0.09 10.14 16 18 O -0.56 -15.30 15.78 5.55 0.09 -15.21 16 19 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 20 C -0.31 -8.69 10.16 -14.93 -0.15 -8.84 16 21 H 0.12 3.88 7.39 -52.48 -0.39 3.50 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.86 13.96 55.50 0.77 -25.08 16 24 Si 0.88 19.34 27.74 -169.99 -4.71 14.62 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 28 C -0.17 -1.47 7.27 -25.77 -0.19 -1.66 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.08 0.89 6.86 -51.93 -0.36 0.53 16 32 H 0.17 0.53 8.06 -52.49 -0.42 0.10 16 33 H 0.17 0.37 7.45 -52.49 -0.39 -0.02 16 34 H 0.40 2.14 7.42 -40.82 -0.30 1.84 16 35 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 41 H 0.35 5.63 7.91 -39.29 -0.31 5.32 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 44 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.88 7.59 -51.93 -0.39 0.48 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -37.47 392.25 -8.77 -46.24 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.95 Total: 13.34 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.81 Total: 1.94 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.37 Total: -58.69 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.17 Total: -23.36 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.47 -8.77 -46.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100976439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.066 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds