Wall clock time and date at job start Tue Mar 31 2020 18:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34488 * 126.83559 * 2 1 4 4 N 1.36451 * 108.85551 * 180.25217 * 3 2 1 5 5 H 0.97002 * 124.85185 * 179.72845 * 4 3 2 6 6 C 1.34653 * 110.29949 * 359.75311 * 4 3 2 7 7 C 1.36772 * 108.39829 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94593 * 179.97438 * 7 6 4 9 9 O 1.21625 * 120.00201 * 180.02562 * 8 7 6 10 10 N 1.34772 * 119.99768 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00059 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46900 * 113.61428 * 219.93557 * 14 13 12 16 16 C 1.46895 * 110.99924 * 203.46824 * 15 14 13 17 17 C 1.50700 * 109.47106 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00101 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00188 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00693 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99366 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00595 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99765 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00044 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46971 * 90.00384 * 24 22 20 26 26 H 1.48500 * 109.47214 * 210.00448 * 24 22 20 27 27 H 1.48501 * 109.46973 * 330.00376 * 24 22 20 28 28 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 29 29 H 1.08998 * 109.47023 * 270.15189 * 1 2 3 30 30 H 1.09011 * 109.46948 * 30.14160 * 1 2 3 31 31 H 1.08991 * 109.47507 * 150.14510 * 1 2 3 32 32 H 1.07999 * 125.57631 * 0.04518 * 3 2 1 33 33 H 1.07997 * 125.80582 * 180.02562 * 6 4 3 34 34 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 36 36 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 37 37 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 38 38 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 39 39 H 1.09000 * 113.69133 * 254.54111 * 13 12 11 40 40 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 41 41 H 1.00902 * 110.99925 * 79.51829 * 15 14 13 42 42 H 1.08994 * 109.47448 * 300.00310 * 16 15 14 43 43 H 1.09001 * 109.47145 * 60.00387 * 16 15 14 44 44 H 0.97006 * 119.99894 * 359.97438 * 19 17 16 45 45 H 0.97003 * 119.99901 * 179.97438 * 23 22 20 46 46 H 1.08992 * 113.61675 * 140.02412 * 28 14 13 47 47 H 1.09000 * 113.60973 * 270.92699 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2412 -0.0106 6 6 3.6656 -0.6902 -0.0040 7 6 2.3864 -1.1741 0.0035 8 6 1.9748 -2.5880 0.0073 9 8 0.7936 -2.8776 0.0135 10 7 2.9072 -3.5612 0.0037 11 6 2.4979 -4.9678 0.0080 12 6 3.7404 -5.8606 0.0033 13 6 3.4222 -7.3598 0.1301 14 6 4.5322 -7.6027 -0.9061 15 7 4.2016 -8.6423 -1.8899 16 6 5.4191 -9.2210 -2.4736 17 6 5.0408 -10.2806 -3.4762 18 8 3.8720 -10.5289 -3.6844 19 7 6.0013 -10.9524 -4.1415 20 6 5.6573 -11.9160 -5.0540 21 1 4.6165 -12.1370 -5.2394 22 6 6.6475 -12.6082 -5.7403 23 7 6.3176 -13.5321 -6.6146 24 14 8.4476 -12.2253 -5.4202 25 1 8.9502 -13.0908 -4.3232 26 1 9.2349 -12.4812 -6.6530 27 1 8.5886 -10.7994 -5.0299 28 6 4.2706 -6.1731 -1.4089 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8888 -0.5161 31 1 -0.3634 -0.8912 -0.5115 32 1 1.9869 2.1059 0.0007 33 1 4.5663 -1.2861 -0.0071 34 1 3.8493 -3.3303 -0.0009 35 1 1.8983 -5.1745 -0.8785 36 1 1.9076 -5.1718 0.9014 37 1 4.5105 -5.5178 0.6943 38 1 2.4270 -7.6265 -0.2255 39 1 3.6451 -7.7732 1.1138 40 1 5.5199 -7.7364 -0.4647 41 1 3.5932 -8.2796 -2.6085 42 1 5.9911 -8.4380 -2.9713 43 1 6.0241 -9.6668 -1.6840 44 1 6.9361 -10.7535 -3.9753 45 1 7.0088 -14.0151 -7.0940 46 1 5.1785 -5.6278 -1.6665 47 1 3.5069 -6.1160 -2.1845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100976439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:07 Heat of formation + Delta-G solvation = -37.416101 kcal Electronic energy + Delta-G solvation = -26989.640738 eV Core-core repulsion = 22979.283183 eV Total energy + Delta-G solvation = -4010.357556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.06176 -40.75178 -40.16539 -39.51535 -36.22103 -35.78136 -34.42612 -33.71627 -33.32287 -31.19705 -29.11022 -27.69839 -27.43985 -26.51606 -25.59176 -23.82699 -22.41123 -21.39042 -21.08730 -20.64517 -20.23581 -19.83668 -19.14255 -17.76934 -17.22171 -17.00136 -16.91540 -16.49117 -16.37370 -16.04694 -15.49979 -15.44937 -15.16500 -14.87179 -14.78747 -14.47487 -14.43923 -14.10582 -13.99951 -13.85977 -13.59233 -13.56623 -13.30272 -13.27104 -13.01256 -12.82761 -12.60646 -12.40591 -12.30662 -11.98089 -11.84385 -11.51428 -11.46865 -11.23931 -10.82594 -10.40836 -10.24437 -10.09321 -9.50147 -9.18106 -9.16330 -8.40813 -6.02174 0.82138 1.30543 1.37034 1.45794 1.50931 1.96869 2.24084 2.27119 2.51345 2.61342 2.78694 3.15508 3.43644 3.64266 3.67965 3.98311 4.01609 4.06281 4.11397 4.20496 4.31904 4.33732 4.47484 4.49987 4.50511 4.60601 4.69750 4.78981 4.89065 4.90738 4.92719 4.93069 4.97946 5.16648 5.17400 5.26946 5.33781 5.43615 5.54128 5.60208 5.83843 5.93575 5.98679 6.20857 6.42470 6.60884 6.68394 6.76719 6.88747 7.40452 7.42155 7.97950 8.77029 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.001608 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.878256 B =17412.147003 C =17806.932215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.155 4.155 3 C -0.012 4.012 4 N -0.533 5.533 5 H 0.438 0.562 6 C 0.073 3.927 7 C -0.274 4.274 8 C 0.578 3.422 9 O -0.597 6.597 10 N -0.713 5.713 11 C 0.136 3.864 12 C -0.099 4.099 13 C -0.122 4.122 14 C 0.065 3.935 15 N -0.681 5.681 16 C 0.064 3.936 17 C 0.445 3.555 18 O -0.618 6.618 19 N -0.590 5.590 20 C -0.332 4.332 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.229 1.229 28 C -0.159 4.159 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.198 0.802 33 H 0.210 0.790 34 H 0.413 0.587 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.343 0.657 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.391 0.609 45 H 0.279 0.721 46 H 0.088 0.912 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 34.572 19.082 39.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.161 4.161 3 C -0.141 4.141 4 N -0.129 5.129 5 H 0.279 0.721 6 C -0.066 4.066 7 C -0.284 4.284 8 C 0.368 3.632 9 O -0.479 6.479 10 N -0.365 5.365 11 C 0.012 3.988 12 C -0.118 4.118 13 C -0.161 4.161 14 C -0.045 4.045 15 N -0.312 5.312 16 C -0.069 4.069 17 C 0.233 3.767 18 O -0.503 6.503 19 N -0.232 5.232 20 C -0.461 4.461 21 H 0.070 0.930 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.152 1.152 28 C -0.198 4.198 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.215 0.785 33 H 0.227 0.773 34 H 0.250 0.750 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.144 0.856 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.138 0.862 41 H 0.162 0.838 42 H 0.096 0.904 43 H 0.134 0.866 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.506 33.634 19.255 39.017 hybrid contribution 1.109 0.228 -1.120 1.593 sum 5.615 33.863 18.135 38.821 Atomic orbital electron populations 1.20092 0.90292 1.01880 1.01423 1.20827 0.95877 0.91784 1.07609 1.21941 0.82585 0.99718 1.09814 1.41560 1.08646 1.06628 1.56022 0.72097 1.22369 0.98189 0.84610 1.01395 1.20429 0.94742 0.91797 1.21451 1.17905 0.85001 0.85446 0.74824 1.90726 1.19535 1.84646 1.53011 1.45662 1.09946 1.05422 1.75427 1.21229 0.96943 0.79784 1.00866 1.22590 0.96878 0.94150 0.98202 1.23053 0.99189 0.94175 0.99718 1.23209 0.99864 0.87836 0.93561 1.60021 1.15163 1.36209 1.19824 1.21677 0.93530 0.95245 0.96403 1.21153 0.85448 0.85556 0.84530 1.90550 1.20819 1.69881 1.69017 1.42024 1.08225 1.35081 1.37865 1.19015 0.94741 1.14506 1.17820 0.92977 1.26166 1.05014 0.95179 0.95140 1.69816 1.36391 1.24744 1.26654 0.85323 0.75928 0.80860 0.79119 1.18113 1.20055 1.15187 1.23804 1.01834 0.97605 0.96562 0.92374 0.90439 0.93643 0.78539 0.77334 0.74955 0.93662 0.92532 0.85589 0.91378 0.90004 0.86214 0.83781 0.90365 0.86589 0.77370 0.91149 0.89318 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.97 71.23 0.71 -0.81 16 2 C -0.15 -2.75 6.35 -18.51 -0.12 -2.87 16 3 C -0.01 -0.11 11.82 83.12 0.98 0.87 16 4 N -0.53 -2.37 5.90 -194.56 -1.15 -3.52 16 5 H 0.44 -1.49 8.96 -92.71 -0.83 -2.32 16 6 C 0.07 0.56 11.40 83.92 0.96 1.51 16 7 C -0.27 -4.89 6.29 -19.04 -0.12 -5.01 16 8 C 0.58 13.49 7.81 86.62 0.68 14.17 16 9 O -0.60 -19.82 15.32 -4.11 -0.06 -19.88 16 10 N -0.71 -11.18 5.55 -466.53 -2.59 -13.77 16 11 C 0.14 2.46 5.51 86.38 0.48 2.94 16 12 C -0.10 -1.26 3.76 -10.18 -0.04 -1.30 16 13 C -0.12 -2.17 7.44 31.12 0.23 -1.94 16 14 C 0.06 1.20 4.16 45.44 0.19 1.39 16 15 N -0.68 -19.66 6.24 -492.86 -3.07 -22.74 16 16 C 0.06 1.88 6.02 85.56 0.52 2.39 16 17 C 0.44 20.22 7.82 87.66 0.69 20.90 16 18 O -0.62 -35.07 15.78 -3.07 -0.05 -35.12 16 19 N -0.59 -27.86 5.09 -306.99 -1.56 -29.42 16 20 C -0.33 -19.65 10.16 84.04 0.85 -18.80 16 21 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 22 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 23 N -0.94 -56.82 13.96 21.66 0.30 -56.51 16 24 Si 0.97 38.44 27.74 68.60 1.90 40.35 16 25 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 26 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 28 C -0.16 -2.38 7.27 31.21 0.23 -2.15 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.04 1.16 6.86 -2.39 -0.02 1.14 16 32 H 0.20 0.56 8.06 -2.91 -0.02 0.53 16 33 H 0.21 -0.22 7.45 -2.91 -0.02 -0.25 16 34 H 0.41 3.14 7.42 -92.71 -0.69 2.45 16 35 H 0.04 1.06 7.85 -2.39 -0.02 1.04 16 36 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.12 1.69 7.88 -2.39 -0.02 1.67 16 41 H 0.34 11.02 7.91 -89.69 -0.71 10.31 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.12 2.81 8.13 -2.39 -0.02 2.79 16 44 H 0.39 15.00 5.76 -92.70 -0.53 14.47 16 45 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 1.32 7.59 -2.39 -0.02 1.30 16 Total: -1.00 -93.18 392.25 -1.37 -94.55 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -1.78 Total: 35.23 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.70 Total: 10.84 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -8.07 Total: -125.96 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -0.11 Total: -55.00 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.90 Total: 40.35 kcal Total: -93.18 -1.37 -94.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100976439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.131 kcal (2) G-P(sol) polarization free energy of solvation -93.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds