Wall clock time and date at job start Tue Mar 31 2020 19:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33232 * 126.01921 * 2 1 4 4 C 1.31533 * 109.76143 * 180.18270 * 3 2 1 5 5 O 1.35204 * 125.48918 * 179.88388 * 4 3 2 6 6 N 1.34945 * 109.01165 * 359.62125 * 4 3 2 7 7 H 0.97004 * 126.53653 * 180.24821 * 6 4 3 8 8 C 1.36720 * 126.02171 * 179.77431 * 2 1 3 9 9 C 1.46379 * 126.82368 * 359.94212 * 8 2 1 10 10 O 1.21737 * 120.00453 * 253.42859 * 9 8 2 11 11 N 1.34777 * 119.99814 * 73.42656 * 9 8 2 12 12 C 1.48121 * 127.84111 * 5.26026 * 11 9 8 13 13 C 1.54678 * 104.51944 * 140.24969 * 12 11 9 14 14 H 1.09004 * 112.74980 * 262.22596 * 13 12 11 15 15 C 1.54162 * 108.72887 * 137.63022 * 13 12 11 16 16 C 1.54844 * 104.33049 * 223.89532 * 15 13 12 17 17 C 1.54844 * 102.73158 * 38.18305 * 16 15 13 18 18 C 1.54156 * 104.33040 * 321.81218 * 17 16 15 19 19 C 1.52995 * 111.82749 * 260.29626 * 18 17 16 20 20 N 1.46505 * 109.47214 * 298.62109 * 19 18 17 21 21 C 1.36934 * 119.99846 * 179.97438 * 20 19 18 22 22 H 1.07994 * 120.00518 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99515 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99816 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00172 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47254 * 90.00163 * 25 23 21 27 27 H 1.48502 * 109.47148 * 209.99934 * 25 23 21 28 28 H 1.48501 * 109.47225 * 329.99921 * 25 23 21 29 29 C 1.48113 * 127.84428 * 185.57973 * 11 9 8 30 30 H 1.08997 * 109.47506 * 270.22600 * 1 2 3 31 31 H 1.09001 * 109.46830 * 30.23126 * 1 2 3 32 32 H 1.09004 * 109.46804 * 150.21776 * 1 2 3 33 33 H 0.96696 * 114.00191 * 269.68915 * 5 4 3 34 34 H 1.08996 * 110.39453 * 259.08986 * 12 11 9 35 35 H 1.09003 * 110.39095 * 21.48967 * 12 11 9 36 36 H 1.08998 * 110.46330 * 105.17980 * 15 13 12 37 37 H 1.09007 * 110.56566 * 342.66117 * 15 13 12 38 38 H 1.08998 * 110.75586 * 279.87538 * 16 15 13 39 39 H 1.08991 * 110.76072 * 156.50077 * 16 15 13 40 40 H 1.09003 * 110.45938 * 203.10100 * 17 16 15 41 41 H 1.09000 * 110.45654 * 80.52882 * 17 16 15 42 42 H 1.09003 * 109.46744 * 58.61633 * 19 18 17 43 43 H 1.08999 * 109.47549 * 178.61982 * 19 18 17 44 44 H 0.97001 * 119.99723 * 0.02562 * 20 19 18 45 45 H 0.97005 * 119.99982 * 180.02562 * 24 23 21 46 46 H 1.08994 * 110.39455 * 338.51004 * 29 11 9 47 47 H 1.08993 * 110.39618 * 100.90951 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0776 0.0000 4 6 3.5532 0.7094 -0.0039 5 8 4.6149 1.5465 -0.0073 6 7 3.6181 -0.6385 0.0018 7 1 4.4243 -1.1779 0.0040 8 6 2.3110 -1.1058 0.0044 9 6 1.8793 -2.5044 0.0110 10 8 1.9878 -3.1702 1.0244 11 7 1.3615 -3.0552 -1.1048 12 6 1.2489 -2.4466 -2.4505 13 6 1.5899 -3.5973 -3.4263 14 1 2.6264 -3.5716 -3.7625 15 6 0.6024 -3.5522 -4.6092 16 6 0.1960 -5.0306 -4.8258 17 6 0.1018 -5.5741 -3.3790 18 6 1.2694 -4.8923 -2.6385 19 6 2.4797 -5.8192 -2.5090 20 7 2.1069 -7.0035 -1.7313 21 6 3.0342 -7.9802 -1.4844 22 1 4.0406 -7.8775 -1.8626 23 6 2.6811 -9.1021 -0.7471 24 7 3.5725 -10.0407 -0.5093 25 14 0.9406 -9.2795 -0.0923 26 1 0.1030 -9.9825 -1.0969 27 1 0.9637 -10.0636 1.1687 28 1 0.3716 -7.9336 0.1721 29 6 0.7700 -4.4039 -1.2622 30 1 -0.3634 0.0041 1.0276 31 1 -0.3633 0.8879 -0.5174 32 1 -0.3633 -0.8920 -0.5105 33 1 4.9240 1.7862 -0.8917 34 1 0.2337 -2.0888 -2.6219 35 1 1.9636 -1.6308 -2.5594 36 1 1.0919 -3.1572 -5.4994 37 1 -0.2705 -2.9501 -4.3566 38 1 0.9620 -5.5631 -5.3895 39 1 -0.7696 -5.0964 -5.3269 40 1 0.2255 -6.6571 -3.3700 41 1 -0.8505 -5.2947 -2.9282 42 1 2.8104 -6.1256 -3.5014 43 1 3.2886 -5.2921 -2.0030 44 1 1.2029 -7.0959 -1.3919 45 1 3.3256 -10.8249 0.0056 46 1 1.1225 -5.0678 -0.4729 47 1 -0.3183 -4.3449 -1.2522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112415030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:27 Heat of formation + Delta-G solvation = 6.520336 kcal Electronic energy + Delta-G solvation = -30039.294763 eV Core-core repulsion = 26030.842434 eV Total energy + Delta-G solvation = -4008.452329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.51228 -40.60928 -38.62714 -37.66715 -35.09085 -34.53883 -33.55299 -31.84212 -31.19355 -30.06221 -29.47372 -27.51570 -25.82671 -25.72167 -23.77967 -22.70790 -22.04171 -21.26420 -20.43254 -19.90174 -19.03010 -18.75582 -17.89667 -17.26178 -16.89996 -16.24620 -15.96262 -15.60407 -15.29371 -14.54694 -14.36697 -14.23112 -14.12161 -13.72605 -13.54140 -13.25250 -13.05833 -12.97088 -12.82300 -12.75611 -12.49647 -12.30457 -12.08728 -11.79052 -11.63823 -11.14744 -10.97595 -10.94709 -10.75738 -10.66759 -10.60463 -10.48030 -10.36420 -10.33557 -10.07835 -9.99110 -9.58288 -8.92454 -8.80099 -8.61604 -7.24230 -5.77243 -3.12947 1.21190 1.83709 2.42177 2.64685 2.96593 3.37376 3.39824 3.46014 3.58780 4.16651 4.29790 4.50302 4.57741 4.59099 4.62717 4.77831 5.01425 5.13918 5.16095 5.22849 5.33158 5.40408 5.41562 5.44324 5.47831 5.54592 5.56952 5.62971 5.63100 5.70536 5.75205 5.77991 5.94978 6.02172 6.03261 6.12316 6.15476 6.26376 6.31480 6.36210 6.46304 6.60415 6.66132 7.24160 7.38338 7.50054 7.96020 7.98017 8.41404 9.19958 9.92263 10.11419 11.41247 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003678 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.005886 B = 7610.379881 C = 8589.417337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.073 3.927 3 N -0.481 5.481 4 C 0.396 3.604 5 O -0.440 6.440 6 N -0.542 5.542 7 H 0.427 0.573 8 C -0.053 4.053 9 C 0.610 3.390 10 O -0.516 6.516 11 N -0.605 5.605 12 C 0.109 3.891 13 C -0.095 4.095 14 H 0.091 0.909 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.117 4.117 18 C -0.079 4.079 19 C 0.180 3.820 20 N -0.752 5.752 21 C -0.244 4.244 22 H 0.089 0.911 23 C 0.007 3.993 24 N -0.934 5.934 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.276 1.276 29 C 0.110 3.890 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.405 0.595 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.024 0.976 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.097 0.903 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 22.789 -8.689 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.061 4.061 3 N -0.211 5.211 4 C 0.095 3.905 5 O -0.241 6.241 6 N -0.159 5.159 7 H 0.266 0.734 8 C -0.170 4.170 9 C 0.395 3.605 10 O -0.390 6.390 11 N -0.339 5.339 12 C -0.014 4.014 13 C -0.115 4.115 14 H 0.109 0.891 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.155 4.155 18 C -0.080 4.080 19 C 0.053 3.947 20 N -0.398 5.398 21 C -0.374 4.374 22 H 0.107 0.893 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.711 3.289 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.202 1.202 29 C -0.011 4.011 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.115 0.885 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.204 23.210 -7.397 25.138 hybrid contribution -0.046 -1.154 0.136 1.163 sum -6.250 22.056 -7.260 24.047 Atomic orbital electron populations 1.20206 0.86508 1.03298 1.03307 1.20744 0.96461 0.86012 1.02840 1.70163 0.98560 1.30140 1.22279 1.20029 0.87333 0.78509 1.04621 1.84864 1.43377 1.61489 1.34325 1.43558 1.08519 1.07775 1.56042 0.73363 1.20460 0.83885 0.94991 1.17705 1.16266 0.78092 0.83570 0.82542 1.90948 1.54549 1.61716 1.31753 1.48827 1.59543 1.16825 1.08693 1.22692 1.01649 0.96003 0.81066 1.22773 1.00504 0.93562 0.94684 0.89074 1.22443 0.98196 0.97486 0.97183 1.22474 1.01236 0.95135 0.96962 1.22515 0.96559 1.01665 0.94770 1.22342 0.97265 0.94702 0.93679 1.20453 0.92432 0.86744 0.95073 1.42698 1.11382 1.20952 1.64775 1.19008 0.93551 0.96493 1.28308 0.89343 1.24648 0.97220 0.96801 1.00250 1.69697 1.33203 1.10548 1.44721 0.86594 0.85960 0.77544 0.78774 1.21006 1.21659 1.20214 1.22760 0.96998 0.82619 0.98758 0.90422 0.90143 0.90827 0.73773 0.90397 0.90836 0.91584 0.91312 0.91135 0.91646 0.89998 0.91611 0.95068 0.95826 0.80575 0.93048 0.88453 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.23 36.01 0.37 -0.33 16 2 C 0.07 0.87 7.14 -82.53 -0.59 0.28 16 3 N -0.48 -5.99 11.22 -10.83 -0.12 -6.12 16 4 C 0.40 4.26 9.43 -89.60 -0.84 3.42 16 5 O -0.44 -3.51 13.62 -17.31 -0.24 -3.75 16 6 N -0.54 -5.85 6.24 -10.91 -0.07 -5.92 16 7 H 0.43 3.81 8.96 -40.82 -0.37 3.44 16 8 C -0.05 -0.68 5.87 -81.98 -0.48 -1.16 16 9 C 0.61 9.31 7.36 -12.98 -0.10 9.22 16 10 O -0.52 -10.31 17.36 5.16 0.09 -10.22 16 11 N -0.61 -7.97 3.31 -170.85 -0.57 -8.54 16 12 C 0.11 1.04 6.42 -2.27 -0.01 1.02 16 13 C -0.10 -0.98 3.60 -88.11 -0.32 -1.30 16 14 H 0.09 0.95 7.91 -51.93 -0.41 0.54 16 15 C -0.12 -0.95 6.36 -25.15 -0.16 -1.11 16 16 C -0.12 -1.19 6.90 -24.79 -0.17 -1.37 16 17 C -0.12 -1.46 5.68 -25.15 -0.14 -1.61 16 18 C -0.08 -1.08 0.63 -152.19 -0.10 -1.17 16 19 C 0.18 3.33 5.25 -4.04 -0.02 3.31 16 20 N -0.75 -17.38 4.39 -59.91 -0.26 -17.65 16 21 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 25 Si 0.88 22.21 27.74 -169.99 -4.71 17.50 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 29 C 0.11 1.62 5.93 -2.45 -0.01 1.60 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.40 0.95 9.06 45.56 0.41 1.36 16 34 H 0.08 0.61 7.19 -51.93 -0.37 0.23 16 35 H 0.07 0.64 7.51 -51.93 -0.39 0.25 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.49 7.18 -51.93 -0.37 0.11 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.24 7.20 -51.93 -0.37 0.86 16 41 H 0.07 0.73 7.18 -51.93 -0.37 0.36 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.36 8.14 4.50 -40.82 -0.18 7.96 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 46 H 0.10 1.84 6.85 -51.93 -0.36 1.48 16 47 H 0.07 0.93 7.18 -51.93 -0.37 0.55 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -37.03 377.39 -8.37 -45.41 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.12 Total: 8.50 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -2.83 Total: 3.86 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -0.24 Total: -66.99 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.15 Total: -13.96 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.03 -8.37 -45.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112415030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.927 kcal (2) G-P(sol) polarization free energy of solvation -37.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds