Wall clock time and date at job start Tue Mar 31 2020 19:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33232 * 126.01921 * 2 1 4 4 C 1.31533 * 109.76143 * 180.18270 * 3 2 1 5 5 O 1.35204 * 125.48918 * 179.88388 * 4 3 2 6 6 N 1.34945 * 109.01165 * 359.62125 * 4 3 2 7 7 H 0.97004 * 126.53653 * 180.24821 * 6 4 3 8 8 C 1.36720 * 126.02171 * 179.77431 * 2 1 3 9 9 C 1.46379 * 126.82368 * 359.94212 * 8 2 1 10 10 O 1.21737 * 120.00453 * 253.42859 * 9 8 2 11 11 N 1.34777 * 119.99814 * 73.42656 * 9 8 2 12 12 C 1.48121 * 127.84111 * 5.26026 * 11 9 8 13 13 C 1.54678 * 104.51944 * 140.24969 * 12 11 9 14 14 H 1.09004 * 112.74980 * 262.22596 * 13 12 11 15 15 C 1.54162 * 108.72887 * 137.63022 * 13 12 11 16 16 C 1.54844 * 104.33049 * 223.89532 * 15 13 12 17 17 C 1.54844 * 102.73158 * 38.18305 * 16 15 13 18 18 C 1.54156 * 104.33040 * 321.81218 * 17 16 15 19 19 C 1.52995 * 111.82749 * 260.29626 * 18 17 16 20 20 N 1.46505 * 109.47214 * 298.62109 * 19 18 17 21 21 C 1.36934 * 119.99846 * 179.97438 * 20 19 18 22 22 H 1.07994 * 120.00518 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99515 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99816 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00172 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47254 * 90.00163 * 25 23 21 27 27 H 1.48502 * 109.47148 * 209.99934 * 25 23 21 28 28 H 1.48501 * 109.47225 * 329.99921 * 25 23 21 29 29 C 1.48113 * 127.84428 * 185.57973 * 11 9 8 30 30 H 1.08997 * 109.47506 * 270.22600 * 1 2 3 31 31 H 1.09001 * 109.46830 * 30.23126 * 1 2 3 32 32 H 1.09004 * 109.46804 * 150.21776 * 1 2 3 33 33 H 0.96696 * 114.00191 * 269.68915 * 5 4 3 34 34 H 1.08996 * 110.39453 * 259.08986 * 12 11 9 35 35 H 1.09003 * 110.39095 * 21.48967 * 12 11 9 36 36 H 1.08998 * 110.46330 * 105.17980 * 15 13 12 37 37 H 1.09007 * 110.56566 * 342.66117 * 15 13 12 38 38 H 1.08998 * 110.75586 * 279.87538 * 16 15 13 39 39 H 1.08991 * 110.76072 * 156.50077 * 16 15 13 40 40 H 1.09003 * 110.45938 * 203.10100 * 17 16 15 41 41 H 1.09000 * 110.45654 * 80.52882 * 17 16 15 42 42 H 1.09003 * 109.46744 * 58.61633 * 19 18 17 43 43 H 1.08999 * 109.47549 * 178.61982 * 19 18 17 44 44 H 0.97001 * 119.99723 * 0.02562 * 20 19 18 45 45 H 0.97005 * 119.99982 * 180.02562 * 24 23 21 46 46 H 1.08994 * 110.39455 * 338.51004 * 29 11 9 47 47 H 1.08993 * 110.39618 * 100.90951 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0776 0.0000 4 6 3.5532 0.7094 -0.0039 5 8 4.6149 1.5465 -0.0073 6 7 3.6181 -0.6385 0.0018 7 1 4.4243 -1.1779 0.0040 8 6 2.3110 -1.1058 0.0044 9 6 1.8793 -2.5044 0.0110 10 8 1.9878 -3.1702 1.0244 11 7 1.3615 -3.0552 -1.1048 12 6 1.2489 -2.4466 -2.4505 13 6 1.5899 -3.5973 -3.4263 14 1 2.6264 -3.5716 -3.7625 15 6 0.6024 -3.5522 -4.6092 16 6 0.1960 -5.0306 -4.8258 17 6 0.1018 -5.5741 -3.3790 18 6 1.2694 -4.8923 -2.6385 19 6 2.4797 -5.8192 -2.5090 20 7 2.1069 -7.0035 -1.7313 21 6 3.0342 -7.9802 -1.4844 22 1 4.0406 -7.8775 -1.8626 23 6 2.6811 -9.1021 -0.7471 24 7 3.5725 -10.0407 -0.5093 25 14 0.9406 -9.2795 -0.0923 26 1 0.1030 -9.9825 -1.0969 27 1 0.9637 -10.0636 1.1687 28 1 0.3716 -7.9336 0.1721 29 6 0.7700 -4.4039 -1.2622 30 1 -0.3634 0.0041 1.0276 31 1 -0.3633 0.8879 -0.5174 32 1 -0.3633 -0.8920 -0.5105 33 1 4.9240 1.7862 -0.8917 34 1 0.2337 -2.0888 -2.6219 35 1 1.9636 -1.6308 -2.5594 36 1 1.0919 -3.1572 -5.4994 37 1 -0.2705 -2.9501 -4.3566 38 1 0.9620 -5.5631 -5.3895 39 1 -0.7696 -5.0964 -5.3269 40 1 0.2255 -6.6571 -3.3700 41 1 -0.8505 -5.2947 -2.9282 42 1 2.8104 -6.1256 -3.5014 43 1 3.2886 -5.2921 -2.0030 44 1 1.2029 -7.0959 -1.3919 45 1 3.3256 -10.8249 0.0056 46 1 1.1225 -5.0678 -0.4729 47 1 -0.3183 -4.3449 -1.2522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112415030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:26 Heat of formation + Delta-G solvation = -24.730287 kcal Electronic energy + Delta-G solvation = -30040.649891 eV Core-core repulsion = 26030.842434 eV Total energy + Delta-G solvation = -4009.807458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.37608 -41.64401 -39.75386 -38.39978 -36.68517 -35.78810 -34.38043 -33.71671 -32.18557 -31.29930 -30.52506 -28.56712 -27.19650 -26.59470 -25.13299 -23.98128 -23.21456 -22.18475 -21.37296 -20.72137 -20.28048 -19.95724 -19.34587 -18.23774 -18.02224 -17.17102 -16.89680 -16.65928 -16.53266 -16.41161 -15.67155 -15.20780 -15.08376 -15.07338 -14.65834 -14.51713 -14.30653 -14.13990 -13.73752 -13.67711 -13.53808 -13.41595 -13.31819 -12.98282 -12.90194 -12.71823 -12.27820 -12.11119 -11.93211 -11.87446 -11.74839 -11.59257 -11.48567 -11.42071 -11.35465 -11.21865 -11.07946 -10.98394 -9.90504 -9.48939 -9.33277 -8.07471 -5.40259 0.35155 0.88570 1.32035 1.37106 1.43218 1.54939 1.64439 2.02080 2.43878 2.83217 3.18324 3.24789 3.37556 3.56257 3.62970 3.82870 3.90653 3.98381 4.14215 4.18311 4.26015 4.40596 4.42548 4.53676 4.57024 4.65160 4.72838 4.75938 4.83979 4.85098 4.87423 4.92439 4.94341 5.01745 5.04831 5.20330 5.21170 5.31573 5.40578 5.41201 5.45777 5.59272 5.70175 5.73620 6.16494 6.33421 6.59536 6.66721 6.84657 7.03581 7.79353 7.98608 9.14406 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003678 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.005886 B = 7610.379881 C = 8589.417337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.081 3.919 3 N -0.505 5.505 4 C 0.412 3.588 5 O -0.442 6.442 6 N -0.541 5.541 7 H 0.432 0.568 8 C -0.077 4.077 9 C 0.611 3.389 10 O -0.579 6.579 11 N -0.600 5.600 12 C 0.111 3.889 13 C -0.090 4.090 14 H 0.087 0.913 15 C -0.103 4.103 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.074 4.074 19 C 0.180 3.820 20 N -0.751 5.751 21 C -0.235 4.235 22 H 0.053 0.947 23 C -0.061 4.061 24 N -0.984 5.984 25 Si 0.950 3.050 26 H -0.267 1.267 27 H -0.297 1.297 28 H -0.256 1.256 29 C 0.109 3.891 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.431 0.569 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.030 0.970 43 H 0.002 0.998 44 H 0.366 0.634 45 H 0.258 0.742 46 H 0.048 0.952 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 25.949 -10.628 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 N -0.236 5.236 4 C 0.111 3.889 5 O -0.246 6.246 6 N -0.158 5.158 7 H 0.273 0.727 8 C -0.194 4.194 9 C 0.398 3.602 10 O -0.458 6.458 11 N -0.332 5.332 12 C -0.010 4.010 13 C -0.109 4.109 14 H 0.105 0.895 15 C -0.140 4.140 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.076 4.076 19 C 0.054 3.946 20 N -0.397 5.397 21 C -0.366 4.366 22 H 0.071 0.929 23 C -0.253 4.253 24 N -0.634 5.634 25 Si 0.777 3.223 26 H -0.193 1.193 27 H -0.224 1.224 28 H -0.181 1.181 29 C -0.014 4.014 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.293 0.707 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.048 0.952 43 H 0.020 0.980 44 H 0.200 0.800 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.923 26.436 -9.436 29.454 hybrid contribution 0.985 -2.062 0.684 2.385 sum -7.939 24.374 -8.752 27.087 Atomic orbital electron populations 1.20327 0.84805 1.04618 1.03649 1.21156 0.97553 0.85390 1.01188 1.70218 0.99235 1.30380 1.23788 1.20145 0.87675 0.78593 1.02522 1.84829 1.42401 1.60693 1.36725 1.43538 1.08279 1.07982 1.56006 0.72723 1.20136 0.84920 0.93822 1.20513 1.16581 0.77335 0.84207 0.82081 1.90908 1.57252 1.63496 1.34124 1.48900 1.58206 1.16400 1.09652 1.22983 1.04035 0.95710 0.78301 1.22778 1.01284 0.91460 0.95402 0.89488 1.22428 0.98446 0.96544 0.96607 1.22462 1.02059 0.96019 0.94925 1.22526 0.96672 0.99663 0.96718 1.22222 0.95602 0.95424 0.94330 1.20553 0.94544 0.85972 0.93581 1.42665 1.10659 1.21232 1.65177 1.19002 0.93039 0.97531 1.27006 0.92934 1.25478 1.01918 0.96628 1.01253 1.69881 1.35773 1.11442 1.46337 0.85484 0.80674 0.78345 0.77833 1.19261 1.22403 1.18111 1.22739 0.98513 0.82711 0.97406 0.90549 0.88328 0.89911 0.70676 0.87035 0.89540 0.89745 0.88721 0.92547 0.89524 0.93127 0.89370 0.95210 0.98016 0.79979 0.93307 0.93322 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.23 71.24 0.73 -0.49 16 2 C 0.08 1.77 7.14 41.99 0.30 2.07 16 3 N -0.50 -11.52 11.22 -301.67 -3.39 -14.91 16 4 C 0.41 8.10 9.43 179.99 1.70 9.80 16 5 O -0.44 -6.01 13.62 -84.85 -1.16 -7.17 16 6 N -0.54 -11.16 6.24 -300.15 -1.87 -13.04 16 7 H 0.43 7.58 8.96 -92.71 -0.83 6.75 16 8 C -0.08 -1.91 5.87 39.80 0.23 -1.68 16 9 C 0.61 18.66 7.36 86.36 0.64 19.29 16 10 O -0.58 -24.16 17.36 -4.47 -0.08 -24.23 16 11 N -0.60 -15.00 3.31 -812.65 -2.69 -17.69 16 12 C 0.11 1.71 6.42 86.64 0.56 2.26 16 13 C -0.09 -1.56 3.60 -9.17 -0.03 -1.60 16 14 H 0.09 1.62 7.91 -2.38 -0.02 1.60 16 15 C -0.10 -1.18 6.36 31.62 0.20 -0.98 16 16 C -0.12 -1.90 6.90 31.85 0.22 -1.68 16 17 C -0.12 -2.65 5.68 31.62 0.18 -2.47 16 18 C -0.07 -1.94 0.63 -50.68 -0.03 -1.97 16 19 C 0.18 6.83 5.25 86.38 0.45 7.28 16 20 N -0.75 -35.74 4.39 -343.45 -1.51 -37.25 16 21 C -0.23 -13.86 10.47 84.03 0.88 -12.98 16 22 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 23 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 24 N -0.98 -64.82 13.97 21.65 0.30 -64.52 16 25 Si 0.95 46.82 27.74 68.60 1.90 48.72 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 28 H -0.26 -11.64 6.52 99.48 0.65 -10.99 16 29 C 0.11 3.06 5.93 86.52 0.51 3.58 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.14 7.93 -2.39 -0.02 1.12 16 33 H 0.43 0.77 9.06 -74.06 -0.67 0.10 16 34 H 0.11 1.08 7.19 -2.39 -0.02 1.06 16 35 H 0.09 1.19 7.51 -2.39 -0.02 1.17 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.69 7.18 -2.38 -0.02 0.67 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 1.47 7.20 -2.39 -0.02 1.45 16 41 H 0.09 1.60 7.18 -2.39 -0.02 1.58 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.37 16.63 4.50 -92.71 -0.42 16.21 16 45 H 0.26 16.18 8.31 -92.70 -0.77 15.41 16 46 H 0.05 1.87 6.85 -2.39 -0.02 1.86 16 47 H 0.10 2.29 7.18 -2.39 -0.02 2.28 16 Total: -1.00 -86.30 377.39 -2.43 -88.73 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.94 Total: 24.17 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 7.00 Total: 17.19 kcal Atomic # 7 Polarization: -138.25 SS G_CDS: -9.16 Total: -147.41 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.23 Total: -31.40 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Total: -86.30 -2.43 -88.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112415030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.996 kcal (2) G-P(sol) polarization free energy of solvation -86.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds