Wall clock time and date at job start Tue Mar 31 2020 18:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34490 * 126.83047 * 2 1 4 4 N 1.36442 * 108.85593 * 180.24906 * 3 2 1 5 5 H 0.97000 * 124.85430 * 179.76736 * 4 3 2 6 6 C 1.34663 * 110.29795 * 359.75183 * 4 3 2 7 7 C 1.36773 * 108.39421 * 359.97438 * 6 4 3 8 8 C 1.47267 * 126.93675 * 179.97438 * 7 6 4 9 9 O 1.21630 * 119.99269 * 180.02562 * 8 7 6 10 10 N 1.34767 * 120.00402 * 0.02562 * 8 7 6 11 11 C 1.47026 * 125.64938 * 0.04302 * 10 8 7 12 12 C 1.54364 * 107.29100 * 181.05708 * 11 10 8 13 13 C 1.55158 * 102.92158 * 22.13882 * 12 11 10 14 14 H 1.08996 * 111.00995 * 82.64029 * 13 12 11 15 15 N 1.46898 * 111.00495 * 206.45716 * 13 12 11 16 16 C 1.46906 * 111.00265 * 172.52341 * 15 13 12 17 17 C 1.46907 * 110.99955 * 296.47351 * 15 13 12 18 18 C 1.50695 * 109.47126 * 170.00081 * 17 15 13 19 19 O 1.21291 * 120.00079 * 0.02562 * 18 17 15 20 20 N 1.34773 * 119.99843 * 179.97438 * 18 17 15 21 21 C 1.37099 * 120.00033 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00330 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99916 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00380 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99702 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46968 * 60.00347 * 25 23 21 27 27 H 1.48511 * 109.46891 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47424 * 300.00116 * 25 23 21 29 29 C 1.47426 * 125.65123 * 180.02562 * 10 8 7 30 30 H 1.08993 * 109.47517 * 270.14572 * 1 2 3 31 31 H 1.09000 * 109.47467 * 30.15441 * 1 2 3 32 32 H 1.09007 * 109.46638 * 150.14602 * 1 2 3 33 33 H 1.07999 * 125.56976 * 359.96815 * 3 2 1 34 34 H 1.07999 * 125.80378 * 179.97438 * 6 4 3 35 35 H 1.09007 * 109.87998 * 300.44067 * 11 10 8 36 36 H 1.09001 * 109.88152 * 61.44945 * 11 10 8 37 37 H 1.09004 * 110.70734 * 263.79641 * 12 11 10 38 38 H 1.08998 * 110.76055 * 140.50212 * 12 11 10 39 39 H 1.08998 * 109.47245 * 178.80725 * 16 15 13 40 40 H 1.08996 * 109.47169 * 58.79799 * 16 15 13 41 41 H 1.09005 * 109.46788 * 298.80320 * 16 15 13 42 42 H 1.08999 * 109.46702 * 290.00169 * 17 15 13 43 43 H 1.08999 * 109.46838 * 49.99929 * 17 15 13 44 44 H 0.96996 * 120.00107 * 0.02562 * 20 18 17 45 45 H 0.96992 * 120.00294 * 179.97438 * 24 23 21 46 46 H 1.09001 * 110.36429 * 37.06396 * 29 10 8 47 47 H 1.09007 * 110.45654 * 274.79489 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0765 0.0000 4 7 3.6111 0.6554 -0.0056 5 1 4.3840 1.2415 -0.0100 6 6 3.6657 -0.6901 -0.0038 7 6 2.3864 -1.1740 0.0036 8 6 1.9751 -2.5880 0.0074 9 8 0.7938 -2.8776 0.0137 10 7 2.9075 -3.5611 0.0040 11 6 4.3630 -3.3532 -0.0026 12 6 5.0254 -4.7472 -0.0318 13 6 3.9050 -5.6517 -0.6097 14 1 3.8808 -5.5966 -1.6980 15 7 4.0648 -7.0407 -0.1592 16 6 2.9120 -7.8595 -0.5578 17 6 5.3188 -7.6167 -0.6630 18 6 5.5696 -8.9412 0.0107 19 8 4.7811 -9.3640 0.8295 20 7 6.6696 -9.6563 -0.2975 21 6 6.8980 -10.8610 0.3157 22 1 6.1964 -11.2372 1.0454 23 6 8.0324 -11.5981 -0.0017 24 7 8.8865 -11.1402 -0.8892 25 14 8.3440 -13.2393 0.8344 26 1 7.2208 -14.1653 0.5411 27 1 9.6119 -13.8213 0.3254 28 1 8.4474 -13.0356 2.3018 29 6 2.6370 -5.0103 0.0066 30 1 -0.3634 0.0026 1.0276 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5116 33 1 1.9867 2.1059 -0.0005 34 1 4.5665 -1.2859 -0.0077 35 1 4.6526 -2.7873 -0.8881 36 1 4.6647 -2.8152 0.8960 37 1 5.2975 -5.0658 0.9746 38 1 5.8970 -4.7472 -0.6863 39 1 3.0659 -8.8876 -0.2302 40 1 2.8070 -7.8355 -1.6424 41 1 2.0077 -7.4626 -0.0964 42 1 5.2433 -7.7654 -1.7401 43 1 6.1433 -6.9372 -0.4469 44 1 7.3000 -9.3183 -0.9526 45 1 9.6785 -11.6546 -1.1105 46 1 1.7630 -5.2342 -0.6050 47 1 2.4880 -5.3682 1.0254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194002762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:27 Heat of formation + Delta-G solvation = -2.057739 kcal Electronic energy + Delta-G solvation = -28394.175108 eV Core-core repulsion = 24385.350806 eV Total energy + Delta-G solvation = -4008.824302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53227 -39.87967 -38.56810 -37.47707 -35.45671 -33.83255 -32.66624 -31.36959 -31.24105 -30.30609 -28.73522 -27.45509 -26.76792 -25.43309 -24.28478 -23.15751 -21.75521 -20.55200 -20.07840 -19.15806 -19.00363 -17.96676 -17.83999 -16.74422 -16.63759 -15.88639 -15.41915 -14.96690 -14.69444 -14.65438 -14.37854 -14.09520 -14.00107 -13.86060 -13.55660 -13.50235 -13.40076 -12.89082 -12.84819 -12.72706 -12.59513 -12.46838 -12.13627 -11.80892 -11.59074 -11.50114 -11.38845 -11.09970 -10.98255 -10.90281 -10.76659 -10.44093 -10.21423 -9.89010 -9.46780 -8.96655 -8.66282 -8.56576 -8.45684 -7.98871 -7.88494 -6.41923 -3.82605 1.52956 2.12966 2.76183 3.00933 3.20099 3.25763 3.30284 3.43175 3.90356 3.96429 4.23118 4.30342 4.49802 4.55294 4.70369 4.82198 4.87390 5.06281 5.08397 5.16646 5.18986 5.26107 5.30646 5.34478 5.54641 5.63529 5.68319 5.69982 5.72741 5.80459 5.85141 5.92148 5.93295 5.96935 6.05039 6.10281 6.23414 6.28797 6.54515 6.57100 6.61290 7.10761 7.21824 7.36510 7.49201 7.55073 8.06174 8.23934 8.61765 9.18131 9.54271 10.06295 10.75739 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030948 B = 0.001986 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.529294 B =14092.143627 C =14735.779981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.109 4.109 3 C -0.028 4.028 4 N -0.551 5.551 5 H 0.417 0.583 6 C 0.035 3.965 7 C -0.223 4.223 8 C 0.603 3.397 9 O -0.543 6.543 10 N -0.616 5.616 11 C 0.098 3.902 12 C -0.128 4.128 13 C 0.069 3.931 14 H 0.055 0.945 15 N -0.507 5.507 16 C 0.020 3.980 17 C 0.046 3.954 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.120 3.880 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.168 0.832 34 H 0.183 0.817 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.015 0.985 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.077 0.923 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 25.381 -2.281 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.156 4.156 4 N -0.145 5.145 5 H 0.254 0.746 6 C -0.101 4.101 7 C -0.233 4.233 8 C 0.395 3.605 9 O -0.421 6.421 10 N -0.351 5.351 11 C -0.026 4.026 12 C -0.166 4.166 13 C -0.041 4.041 14 H 0.073 0.927 15 N -0.231 5.231 16 C -0.128 4.128 17 C -0.086 4.086 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.003 4.003 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.185 0.815 34 H 0.200 0.800 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.360 25.013 -1.282 26.104 hybrid contribution 1.240 -0.305 -0.969 1.603 sum -6.120 24.707 -2.251 25.553 Atomic orbital electron populations 1.20195 0.89291 1.02563 1.02007 1.20566 0.95674 0.90274 1.05073 1.21588 0.82508 0.99193 1.12276 1.41560 1.08293 1.06802 1.57865 0.74635 1.22725 0.99307 0.83788 1.04266 1.20300 0.92767 0.92509 1.17772 1.17034 0.84345 0.83372 0.75781 1.90752 1.16688 1.83433 1.51240 1.48219 1.06258 1.06515 1.74084 1.22323 0.80671 0.98441 1.01147 1.22788 0.97635 0.92494 1.03724 1.22783 0.94875 0.89409 0.97043 0.92740 1.61618 1.02344 0.99739 1.59393 1.22579 0.92335 1.00926 0.96970 1.21869 0.92727 0.96763 0.97194 1.19709 0.84100 0.86514 0.86739 1.90495 1.47059 1.71675 1.36790 1.41853 1.20719 1.19004 1.38532 1.19646 1.06904 0.95202 1.21041 0.87955 1.25253 0.95714 0.99988 0.96994 1.69597 1.12637 1.39521 1.32644 0.85924 0.77537 0.81390 0.79403 1.19927 1.21021 1.19898 1.22156 0.97317 0.78604 1.02224 0.91799 0.92409 0.90315 0.81452 0.80043 0.91234 0.90932 0.88809 0.89830 0.88367 0.96608 0.91858 0.93434 0.89282 0.77529 0.91854 0.90490 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.97 36.01 0.36 -0.47 16 2 C -0.11 -1.14 6.35 -102.54 -0.65 -1.80 16 3 C -0.03 -0.20 11.82 -16.83 -0.20 -0.40 16 4 N -0.55 -3.14 5.90 -12.85 -0.08 -3.22 16 5 H 0.42 0.87 8.96 -40.82 -0.37 0.50 16 6 C 0.04 0.27 10.42 -16.84 -0.18 0.10 16 7 C -0.22 -2.55 6.26 -103.35 -0.65 -3.19 16 8 C 0.60 8.46 7.84 -12.59 -0.10 8.36 16 9 O -0.54 -9.40 15.58 5.25 0.08 -9.32 16 10 N -0.62 -7.49 3.33 -171.82 -0.57 -8.06 16 11 C 0.10 0.84 5.01 -3.04 -0.02 0.83 16 12 C -0.13 -1.28 5.42 -24.87 -0.13 -1.42 16 13 C 0.07 0.86 2.71 -65.57 -0.18 0.68 16 14 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 15 N -0.51 -8.11 4.40 -233.75 -1.03 -9.14 16 16 C 0.02 0.32 8.97 60.07 0.54 0.86 16 17 C 0.05 0.78 5.34 -4.97 -0.03 0.75 16 18 C 0.44 10.18 7.46 -10.99 -0.08 10.10 16 19 O -0.58 -15.19 13.92 5.55 0.08 -15.11 16 20 N -0.56 -13.97 5.29 -10.97 -0.06 -14.03 16 21 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 25 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.12 1.57 5.28 -2.54 -0.01 1.56 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.96 6.86 -51.93 -0.36 0.60 16 33 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.18 0.94 4.42 -52.49 -0.23 0.71 16 35 H 0.07 0.47 6.87 -51.92 -0.36 0.11 16 36 H 0.07 0.52 7.02 -51.93 -0.36 0.15 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 39 H 0.10 1.93 5.81 -51.93 -0.30 1.62 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.06 0.93 7.15 -51.93 -0.37 0.56 16 42 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.09 1.33 6.82 -51.93 -0.35 0.98 16 44 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.08 1.07 7.94 -51.93 -0.41 0.65 16 47 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -34.98 378.48 -8.47 -43.45 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.74 Total: 9.24 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.56 Total: 8.11 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -1.01 Total: -57.93 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.16 Total: -24.43 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.98 -8.47 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194002762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.393 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds