Wall clock time and date at job start Tue Mar 31 2020 18:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34490 * 126.83047 * 2 1 4 4 N 1.36442 * 108.85593 * 180.24906 * 3 2 1 5 5 H 0.97000 * 124.85430 * 179.76736 * 4 3 2 6 6 C 1.34663 * 110.29795 * 359.75183 * 4 3 2 7 7 C 1.36773 * 108.39421 * 359.97438 * 6 4 3 8 8 C 1.47267 * 126.93675 * 179.97438 * 7 6 4 9 9 O 1.21630 * 119.99269 * 180.02562 * 8 7 6 10 10 N 1.34767 * 120.00402 * 0.02562 * 8 7 6 11 11 C 1.47026 * 125.64938 * 0.04302 * 10 8 7 12 12 C 1.54364 * 107.29100 * 181.05708 * 11 10 8 13 13 C 1.55158 * 102.92158 * 22.13882 * 12 11 10 14 14 H 1.08996 * 111.00995 * 82.64029 * 13 12 11 15 15 N 1.46898 * 111.00495 * 206.45716 * 13 12 11 16 16 C 1.46906 * 111.00265 * 172.52341 * 15 13 12 17 17 C 1.46907 * 110.99955 * 296.47351 * 15 13 12 18 18 C 1.50695 * 109.47126 * 170.00081 * 17 15 13 19 19 O 1.21291 * 120.00079 * 0.02562 * 18 17 15 20 20 N 1.34773 * 119.99843 * 179.97438 * 18 17 15 21 21 C 1.37099 * 120.00033 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00330 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99916 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00380 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99702 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46968 * 60.00347 * 25 23 21 27 27 H 1.48511 * 109.46891 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47424 * 300.00116 * 25 23 21 29 29 C 1.47426 * 125.65123 * 180.02562 * 10 8 7 30 30 H 1.08993 * 109.47517 * 270.14572 * 1 2 3 31 31 H 1.09000 * 109.47467 * 30.15441 * 1 2 3 32 32 H 1.09007 * 109.46638 * 150.14602 * 1 2 3 33 33 H 1.07999 * 125.56976 * 359.96815 * 3 2 1 34 34 H 1.07999 * 125.80378 * 179.97438 * 6 4 3 35 35 H 1.09007 * 109.87998 * 300.44067 * 11 10 8 36 36 H 1.09001 * 109.88152 * 61.44945 * 11 10 8 37 37 H 1.09004 * 110.70734 * 263.79641 * 12 11 10 38 38 H 1.08998 * 110.76055 * 140.50212 * 12 11 10 39 39 H 1.08998 * 109.47245 * 178.80725 * 16 15 13 40 40 H 1.08996 * 109.47169 * 58.79799 * 16 15 13 41 41 H 1.09005 * 109.46788 * 298.80320 * 16 15 13 42 42 H 1.08999 * 109.46702 * 290.00169 * 17 15 13 43 43 H 1.08999 * 109.46838 * 49.99929 * 17 15 13 44 44 H 0.96996 * 120.00107 * 0.02562 * 20 18 17 45 45 H 0.96992 * 120.00294 * 179.97438 * 24 23 21 46 46 H 1.09001 * 110.36429 * 37.06396 * 29 10 8 47 47 H 1.09007 * 110.45654 * 274.79489 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0765 0.0000 4 7 3.6111 0.6554 -0.0056 5 1 4.3840 1.2415 -0.0100 6 6 3.6657 -0.6901 -0.0038 7 6 2.3864 -1.1740 0.0036 8 6 1.9751 -2.5880 0.0074 9 8 0.7938 -2.8776 0.0137 10 7 2.9075 -3.5611 0.0040 11 6 4.3630 -3.3532 -0.0026 12 6 5.0254 -4.7472 -0.0318 13 6 3.9050 -5.6517 -0.6097 14 1 3.8808 -5.5966 -1.6980 15 7 4.0648 -7.0407 -0.1592 16 6 2.9120 -7.8595 -0.5578 17 6 5.3188 -7.6167 -0.6630 18 6 5.5696 -8.9412 0.0107 19 8 4.7811 -9.3640 0.8295 20 7 6.6696 -9.6563 -0.2975 21 6 6.8980 -10.8610 0.3157 22 1 6.1964 -11.2372 1.0454 23 6 8.0324 -11.5981 -0.0017 24 7 8.8865 -11.1402 -0.8892 25 14 8.3440 -13.2393 0.8344 26 1 7.2208 -14.1653 0.5411 27 1 9.6119 -13.8213 0.3254 28 1 8.4474 -13.0356 2.3018 29 6 2.6370 -5.0103 0.0066 30 1 -0.3634 0.0026 1.0276 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5116 33 1 1.9867 2.1059 -0.0005 34 1 4.5665 -1.2859 -0.0077 35 1 4.6526 -2.7873 -0.8881 36 1 4.6647 -2.8152 0.8960 37 1 5.2975 -5.0658 0.9746 38 1 5.8970 -4.7472 -0.6863 39 1 3.0659 -8.8876 -0.2302 40 1 2.8070 -7.8355 -1.6424 41 1 2.0077 -7.4626 -0.0964 42 1 5.2433 -7.7654 -1.7401 43 1 6.1433 -6.9372 -0.4469 44 1 7.3000 -9.3183 -0.9526 45 1 9.6785 -11.6546 -1.1105 46 1 1.7630 -5.2342 -0.6050 47 1 2.4880 -5.3682 1.0254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194002762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:26 Heat of formation + Delta-G solvation = -28.741291 kcal Electronic energy + Delta-G solvation = -28395.332194 eV Core-core repulsion = 24385.350806 eV Total energy + Delta-G solvation = -4009.981388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18045 -40.89601 -40.11885 -38.74336 -36.73584 -35.75818 -33.32395 -33.24924 -32.30523 -31.13895 -29.88880 -28.64099 -27.44463 -26.99475 -25.66447 -24.28162 -22.54336 -21.51515 -20.96008 -20.85107 -19.83109 -19.71145 -18.61515 -17.95756 -17.55370 -17.38980 -16.59099 -16.38118 -16.07776 -15.91670 -15.55946 -15.25605 -15.15682 -14.99184 -14.72765 -14.60568 -14.20930 -14.01663 -13.78180 -13.67819 -13.59139 -13.54223 -13.41628 -13.28267 -13.02057 -12.84721 -12.59285 -12.40991 -12.33600 -12.12203 -12.06420 -11.86949 -11.80232 -11.42411 -10.93598 -10.25662 -9.96521 -9.80646 -9.45849 -9.24593 -9.16586 -8.43560 -5.91434 0.78428 1.41282 1.43235 1.50709 1.53508 1.89020 2.09791 2.30882 2.47693 2.53674 2.82011 3.23407 3.34879 3.47807 3.66130 3.94490 4.05454 4.07386 4.18118 4.26836 4.29702 4.35485 4.40699 4.47719 4.55470 4.56923 4.60259 4.68089 4.70873 4.76324 4.88275 4.90107 4.92301 5.02626 5.11150 5.15563 5.24944 5.32966 5.34305 5.44229 5.84007 5.86804 5.98508 6.06091 6.19708 6.57783 6.64883 6.72370 7.16953 7.26531 7.60964 8.17496 8.73471 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030948 B = 0.001986 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.529294 B =14092.143627 C =14735.779981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.154 4.154 3 C -0.007 4.007 4 N -0.533 5.533 5 H 0.439 0.561 6 C 0.059 3.941 7 C -0.268 4.268 8 C 0.593 3.407 9 O -0.595 6.595 10 N -0.617 5.617 11 C 0.096 3.904 12 C -0.123 4.123 13 C 0.073 3.927 14 H 0.068 0.932 15 N -0.524 5.524 16 C 0.026 3.974 17 C 0.060 3.940 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.122 3.878 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.202 0.798 34 H 0.211 0.789 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.061 0.939 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.861 28.162 -3.070 28.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.160 4.160 3 C -0.136 4.136 4 N -0.128 5.128 5 H 0.280 0.720 6 C -0.079 4.079 7 C -0.278 4.278 8 C 0.387 3.613 9 O -0.478 6.478 10 N -0.350 5.350 11 C -0.026 4.026 12 C -0.161 4.161 13 C -0.036 4.036 14 H 0.086 0.914 15 N -0.249 5.249 16 C -0.122 4.122 17 C -0.071 4.071 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.211 5.211 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.002 4.002 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.219 0.781 34 H 0.228 0.772 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.137 0.863 44 H 0.231 0.769 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.742 27.843 -2.088 28.321 hybrid contribution 0.403 -1.091 -0.705 1.360 sum -4.339 26.752 -2.793 27.245 Atomic orbital electron populations 1.20094 0.90070 1.02002 1.01415 1.20808 0.95953 0.91409 1.07800 1.21984 0.82448 0.99742 1.09387 1.41616 1.08764 1.06497 1.55934 0.72022 1.22987 0.98650 0.84655 1.01601 1.20290 0.94911 0.91195 1.21398 1.17597 0.83918 0.84784 0.75016 1.90711 1.18872 1.84329 1.53862 1.48277 1.07817 1.05506 1.73375 1.22592 0.78097 0.98257 1.03658 1.22821 0.97624 0.92246 1.03404 1.22785 0.95633 0.87435 0.97710 0.91420 1.61533 1.01686 1.01310 1.60323 1.22416 0.93009 0.98944 0.97866 1.21735 0.94170 0.93767 0.97410 1.20784 0.82596 0.87952 0.85788 1.90479 1.48077 1.73089 1.38516 1.41903 1.21597 1.18751 1.38890 1.19587 1.07438 0.97060 1.21964 0.90474 1.25976 0.95058 1.02824 0.97358 1.69651 1.12810 1.40565 1.32994 0.85037 0.77733 0.77473 0.78378 1.19947 1.19522 1.19810 1.21975 0.97436 0.79941 1.00802 0.92505 0.90062 0.93650 0.78146 0.77249 0.88163 0.88801 0.90068 0.87029 0.92167 0.95052 0.91191 0.91408 0.86298 0.76941 0.91362 0.92062 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 9.97 71.24 0.71 -0.91 16 2 C -0.15 -3.07 6.35 -18.51 -0.12 -3.19 16 3 C -0.01 -0.08 11.82 83.12 0.98 0.90 16 4 N -0.53 -3.75 5.90 -194.55 -1.15 -4.90 16 5 H 0.44 -0.49 8.96 -92.71 -0.83 -1.32 16 6 C 0.06 0.69 10.42 83.92 0.87 1.57 16 7 C -0.27 -5.82 6.26 -19.04 -0.12 -5.94 16 8 C 0.59 16.99 7.84 86.62 0.68 17.67 16 9 O -0.60 -22.21 15.58 -4.12 -0.06 -22.27 16 10 N -0.62 -14.54 3.33 -815.76 -2.71 -17.26 16 11 C 0.10 1.33 5.01 86.74 0.43 1.76 16 12 C -0.12 -2.06 5.42 31.80 0.17 -1.89 16 13 C 0.07 1.72 2.71 46.30 0.13 1.84 16 14 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 15 N -0.52 -16.44 4.40 -893.46 -3.93 -20.37 16 16 C 0.03 0.85 8.97 127.69 1.15 2.00 16 17 C 0.06 1.95 5.34 85.55 0.46 2.41 16 18 C 0.44 20.45 7.46 87.66 0.65 21.10 16 19 O -0.62 -33.59 13.92 -3.06 -0.04 -33.64 16 20 N -0.57 -28.71 5.29 -307.00 -1.62 -30.33 16 21 C -0.33 -18.55 9.68 84.04 0.81 -17.73 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 24 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16 25 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 29 C 0.12 3.26 5.28 86.85 0.46 3.72 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.22 6.86 -2.38 -0.02 1.20 16 33 H 0.20 0.78 8.06 -2.91 -0.02 0.75 16 34 H 0.21 1.08 4.42 -2.91 -0.01 1.07 16 35 H 0.10 0.84 6.87 -2.38 -0.02 0.82 16 36 H 0.09 0.95 7.02 -2.39 -0.02 0.93 16 37 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.11 1.30 7.88 -2.39 -0.02 1.28 16 39 H 0.06 2.47 5.81 -2.39 -0.01 2.46 16 40 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 2.16 7.15 -2.38 -0.02 2.15 16 42 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 43 H 0.12 3.18 6.82 -2.39 -0.02 3.16 16 44 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 45 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 46 H 0.06 1.80 7.94 -2.39 -0.02 1.78 16 47 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -81.75 378.48 -0.02 -81.77 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.54 Total: 27.62 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 7.74 Total: 23.12 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -9.13 Total: -121.30 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -0.11 Total: -55.91 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -81.75 -0.02 -81.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194002762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.025 kcal (2) G-P(sol) polarization free energy of solvation -81.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds