Wall clock time and date at job start Tue Mar 31 2020 18:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34485 * 126.83501 * 2 1 4 4 N 1.36450 * 108.85589 * 179.90043 * 3 2 1 5 5 H 0.96998 * 124.85253 * 180.14137 * 4 3 2 6 6 C 1.34654 * 110.29725 * 0.37703 * 4 3 2 7 7 C 1.36775 * 108.39953 * 359.77654 * 6 4 3 8 8 C 1.47255 * 126.94203 * 179.97438 * 7 6 4 9 9 O 1.21630 * 120.00082 * 220.03400 * 8 7 6 10 10 N 1.34781 * 120.00438 * 40.03826 * 8 7 6 11 11 C 1.46925 * 120.62425 * 5.21161 * 10 8 7 12 12 C 1.53625 * 108.53968 * 126.37319 * 11 10 8 13 13 C 1.53042 * 109.24398 * 54.85571 * 12 11 10 14 14 N 1.46891 * 109.46094 * 178.48982 * 13 12 11 15 15 C 1.46900 * 111.00493 * 275.06676 * 14 13 12 16 16 C 1.50695 * 109.47588 * 180.02562 * 15 14 13 17 17 O 1.21300 * 119.99817 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99932 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99797 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99958 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00020 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00159 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47256 * 59.99701 * 23 21 19 25 25 H 1.48503 * 109.47028 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47102 * 299.99770 * 23 21 19 27 27 C 1.53048 * 109.53519 * 298.51192 * 13 12 11 28 28 C 1.46916 * 120.63149 * 185.49736 * 10 8 7 29 29 H 1.08994 * 109.47238 * 269.68853 * 1 2 3 30 30 H 1.08996 * 109.47207 * 149.68183 * 1 2 3 31 31 H 1.09002 * 109.47010 * 29.68391 * 1 2 3 32 32 H 1.07995 * 125.57252 * 359.97438 * 3 2 1 33 33 H 1.07999 * 125.80235 * 179.73539 * 6 4 3 34 34 H 1.08999 * 109.58826 * 246.20142 * 11 10 8 35 35 H 1.08996 * 109.59430 * 6.63136 * 11 10 8 36 36 H 1.09000 * 109.63393 * 294.86519 * 12 11 10 37 37 H 1.08998 * 109.43203 * 174.72056 * 12 11 10 38 38 H 1.09001 * 109.45757 * 58.52926 * 13 12 11 39 39 H 1.00909 * 111.00334 * 151.11170 * 14 13 12 40 40 H 1.09002 * 109.46758 * 300.00387 * 15 14 13 41 41 H 1.08997 * 109.46998 * 59.99857 * 15 14 13 42 42 H 0.96997 * 120.00495 * 359.97438 * 18 16 15 43 43 H 0.97003 * 120.00396 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.49545 * 301.41183 * 27 13 12 45 45 H 1.08996 * 109.52298 * 181.33299 * 27 13 12 46 46 H 1.09003 * 109.59065 * 353.37061 * 28 10 8 47 47 H 1.08999 * 109.58859 * 113.65735 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 0.0022 5 1 4.3840 1.2412 0.0047 6 6 3.6656 -0.6902 -0.0046 7 6 2.3863 -1.1741 -0.0064 8 6 1.9749 -2.5880 -0.0139 9 8 1.0302 -2.9429 -0.6928 10 7 2.6451 -3.4889 0.7316 11 6 3.7141 -3.0590 1.6432 12 6 3.4108 -3.6086 3.0453 13 6 3.2273 -5.1258 2.9636 14 7 2.9728 -5.6611 4.3076 15 6 4.2319 -5.9136 5.0209 16 6 3.9313 -6.4614 6.3922 17 8 2.7812 -6.6250 6.7413 18 7 4.9403 -6.7687 7.2312 19 6 4.6668 -7.2665 8.4790 20 1 3.6428 -7.4121 8.7897 21 6 5.7071 -7.5838 9.3438 22 7 6.9531 -7.4071 8.9655 23 14 5.3345 -8.2615 11.0442 24 1 4.5750 -9.5311 10.9156 25 1 6.6074 -8.5175 11.7649 26 1 4.5248 -7.2751 11.8037 27 6 2.0408 -5.4494 2.0527 28 6 2.3248 -4.9200 0.6434 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3633 -0.8871 -0.5187 31 1 -0.3633 0.8928 -0.5089 32 1 1.9868 2.1058 -0.0004 33 1 4.5663 -1.2860 -0.0087 34 1 4.6705 -3.4483 1.2942 35 1 3.7506 -1.9701 1.6761 36 1 2.4982 -3.1519 3.4282 37 1 4.2413 -3.3782 3.7126 38 1 4.1313 -5.5795 2.5573 39 1 2.4085 -6.4965 4.2633 40 1 4.8266 -6.6372 4.4633 41 1 4.7890 -4.9816 5.1157 42 1 5.8600 -6.6376 6.9523 43 1 7.6794 -7.6282 9.5693 44 1 1.1411 -4.9754 2.4450 45 1 1.8956 -6.5290 2.0134 46 1 1.4441 -5.0595 0.0164 47 1 3.1692 -5.4576 0.2122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203692554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:37 Heat of formation + Delta-G solvation = -23.376529 kcal Electronic energy + Delta-G solvation = -28271.687416 eV Core-core repulsion = 24261.938661 eV Total energy + Delta-G solvation = -4009.748754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57621 -39.84245 -38.39128 -37.46796 -35.02201 -33.85343 -32.74016 -31.95495 -31.24302 -30.88600 -29.72758 -26.90262 -26.75981 -24.86903 -23.74233 -23.48813 -21.99952 -20.58870 -20.06402 -19.21117 -18.85948 -18.11370 -17.86748 -16.85491 -16.07723 -15.78552 -15.42615 -15.29515 -14.86422 -14.51019 -14.47709 -14.17273 -14.03040 -13.94139 -13.76981 -13.52990 -13.36764 -13.13290 -12.94220 -12.77670 -12.53731 -12.26791 -12.14644 -11.93699 -11.64213 -11.57985 -11.39987 -11.28673 -11.03208 -10.80487 -10.47663 -10.44023 -10.21029 -9.94114 -9.49899 -8.91326 -8.70881 -8.53878 -8.43669 -8.05631 -7.95676 -6.41754 -3.82495 1.60735 2.14047 2.77275 2.93672 3.20232 3.24561 3.25678 3.30394 3.91192 4.08111 4.29644 4.48799 4.55100 4.69089 4.74613 4.83075 4.95691 5.05237 5.09653 5.15599 5.21871 5.25403 5.26641 5.40850 5.47300 5.52088 5.57223 5.63626 5.68462 5.76181 5.80128 5.85175 5.95096 5.97570 6.00246 6.11911 6.23250 6.35682 6.42537 6.52974 6.61835 7.11331 7.26754 7.33587 7.55055 7.68731 8.06472 8.17511 8.61565 9.18009 9.54477 10.06235 10.75952 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002003 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.529293 B =13972.881717 C =14465.022950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.115 4.115 3 C -0.022 4.022 4 N -0.551 5.551 5 H 0.418 0.582 6 C 0.041 3.959 7 C -0.220 4.220 8 C 0.593 3.407 9 O -0.544 6.544 10 N -0.608 5.608 11 C 0.101 3.899 12 C -0.122 4.122 13 C 0.089 3.911 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.135 4.135 28 C 0.117 3.883 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.169 0.831 33 H 0.173 0.827 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.351 0.649 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 15.692 -20.904 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.150 4.150 4 N -0.145 5.145 5 H 0.254 0.746 6 C -0.095 4.095 7 C -0.231 4.231 8 C 0.383 3.617 9 O -0.422 6.422 10 N -0.342 5.342 11 C -0.022 4.022 12 C -0.161 4.161 13 C -0.022 4.022 14 N -0.298 5.298 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.174 4.174 28 C -0.006 4.006 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.186 0.814 33 H 0.190 0.810 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.171 0.829 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.112 0.888 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.794 16.051 -20.621 26.280 hybrid contribution 1.462 -0.796 0.431 1.719 sum -1.332 15.255 -20.190 25.340 Atomic orbital electron populations 1.20207 0.89479 1.02836 1.01928 1.20512 0.95522 0.90313 1.05785 1.21571 0.82431 0.99200 1.11819 1.41489 1.08314 1.06651 1.58067 0.74587 1.21929 0.98391 0.83757 1.05416 1.20280 0.92936 0.92748 1.17125 1.17485 0.81462 0.84155 0.78604 1.90742 1.28175 1.80366 1.42948 1.47988 1.37081 1.07061 1.42038 1.22112 0.89593 1.01076 0.89455 1.22007 1.03349 0.95500 0.95283 1.21486 0.96654 0.95281 0.88734 1.60079 1.17007 1.37416 1.15293 1.21711 0.91640 1.00286 0.94476 1.19833 0.86194 0.84654 0.86720 1.90529 1.20598 1.58283 1.77253 1.41861 1.07754 1.56631 1.13870 1.19657 0.94890 1.38571 0.89754 0.87989 1.25259 0.94673 0.97810 1.00223 1.69603 0.98490 1.48731 1.37604 0.85917 0.77425 0.79459 0.81412 1.19916 1.20995 1.19875 1.22094 0.99403 1.01387 0.94511 1.21550 1.02002 0.79778 0.97264 0.91822 0.90557 0.92024 0.81414 0.80992 0.91588 0.88846 0.90563 0.90665 0.93953 0.82922 0.93960 0.89740 0.77492 0.91846 0.90343 0.90655 0.88754 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.33 36.00 0.37 -0.46 16 2 C -0.11 -1.16 6.36 -102.54 -0.65 -1.81 16 3 C -0.02 -0.16 11.82 -16.82 -0.20 -0.36 16 4 N -0.55 -3.01 5.90 -12.85 -0.08 -3.09 16 5 H 0.42 0.84 8.96 -40.82 -0.37 0.47 16 6 C 0.04 0.29 9.52 -16.84 -0.16 0.13 16 7 C -0.22 -2.36 5.40 -103.35 -0.56 -2.92 16 8 C 0.59 7.65 7.54 -12.59 -0.09 7.55 16 9 O -0.54 -8.80 15.55 5.25 0.08 -8.72 16 10 N -0.61 -6.61 2.97 -173.84 -0.52 -7.12 16 11 C 0.10 0.89 5.50 -3.49 -0.02 0.87 16 12 C -0.12 -1.36 5.60 -26.38 -0.15 -1.51 16 13 C 0.09 1.07 2.45 -67.67 -0.17 0.90 16 14 N -0.67 -10.63 5.93 -107.95 -0.64 -11.27 16 15 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 16 C 0.44 10.39 7.82 -10.99 -0.09 10.31 16 17 O -0.58 -15.92 15.78 5.54 0.09 -15.83 16 18 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.14 -1.50 5.36 -26.61 -0.14 -1.64 16 28 C 0.12 1.22 6.44 -3.72 -0.02 1.20 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.89 7.17 -51.93 -0.37 0.52 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.17 0.81 7.27 -52.49 -0.38 0.43 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.74 4.76 -51.93 -0.25 0.49 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.83 7.42 -51.93 -0.39 0.44 16 38 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 39 H 0.35 5.84 8.03 -39.29 -0.32 5.52 16 40 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 41 H 0.08 1.34 7.41 -51.93 -0.38 0.96 16 42 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 46 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -35.49 382.87 -8.65 -44.14 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.85 Total: 13.06 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -2.15 Total: 5.11 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.57 Total: -59.57 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.17 Total: -24.55 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.49 -8.65 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203692554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.762 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds