Wall clock time and date at job start Tue Mar 31 2020 18:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34485 * 126.83501 * 2 1 4 4 N 1.36450 * 108.85589 * 179.90043 * 3 2 1 5 5 H 0.96998 * 124.85253 * 180.14137 * 4 3 2 6 6 C 1.34654 * 110.29725 * 0.37703 * 4 3 2 7 7 C 1.36775 * 108.39953 * 359.77654 * 6 4 3 8 8 C 1.47255 * 126.94203 * 179.97438 * 7 6 4 9 9 O 1.21630 * 120.00082 * 220.03400 * 8 7 6 10 10 N 1.34781 * 120.00438 * 40.03826 * 8 7 6 11 11 C 1.46925 * 120.62425 * 5.21161 * 10 8 7 12 12 C 1.53625 * 108.53968 * 126.37319 * 11 10 8 13 13 C 1.53042 * 109.24398 * 54.85571 * 12 11 10 14 14 N 1.46891 * 109.46094 * 178.48982 * 13 12 11 15 15 C 1.46900 * 111.00493 * 275.06676 * 14 13 12 16 16 C 1.50695 * 109.47588 * 180.02562 * 15 14 13 17 17 O 1.21300 * 119.99817 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99932 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99797 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99958 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00020 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00159 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47256 * 59.99701 * 23 21 19 25 25 H 1.48503 * 109.47028 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47102 * 299.99770 * 23 21 19 27 27 C 1.53048 * 109.53519 * 298.51192 * 13 12 11 28 28 C 1.46916 * 120.63149 * 185.49736 * 10 8 7 29 29 H 1.08994 * 109.47238 * 269.68853 * 1 2 3 30 30 H 1.08996 * 109.47207 * 149.68183 * 1 2 3 31 31 H 1.09002 * 109.47010 * 29.68391 * 1 2 3 32 32 H 1.07995 * 125.57252 * 359.97438 * 3 2 1 33 33 H 1.07999 * 125.80235 * 179.73539 * 6 4 3 34 34 H 1.08999 * 109.58826 * 246.20142 * 11 10 8 35 35 H 1.08996 * 109.59430 * 6.63136 * 11 10 8 36 36 H 1.09000 * 109.63393 * 294.86519 * 12 11 10 37 37 H 1.08998 * 109.43203 * 174.72056 * 12 11 10 38 38 H 1.09001 * 109.45757 * 58.52926 * 13 12 11 39 39 H 1.00909 * 111.00334 * 151.11170 * 14 13 12 40 40 H 1.09002 * 109.46758 * 300.00387 * 15 14 13 41 41 H 1.08997 * 109.46998 * 59.99857 * 15 14 13 42 42 H 0.96997 * 120.00495 * 359.97438 * 18 16 15 43 43 H 0.97003 * 120.00396 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.49545 * 301.41183 * 27 13 12 45 45 H 1.08996 * 109.52298 * 181.33299 * 27 13 12 46 46 H 1.09003 * 109.59065 * 353.37061 * 28 10 8 47 47 H 1.08999 * 109.58859 * 113.65735 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 0.0022 5 1 4.3840 1.2412 0.0047 6 6 3.6656 -0.6902 -0.0046 7 6 2.3863 -1.1741 -0.0064 8 6 1.9749 -2.5880 -0.0139 9 8 1.0302 -2.9429 -0.6928 10 7 2.6451 -3.4889 0.7316 11 6 3.7141 -3.0590 1.6432 12 6 3.4108 -3.6086 3.0453 13 6 3.2273 -5.1258 2.9636 14 7 2.9728 -5.6611 4.3076 15 6 4.2319 -5.9136 5.0209 16 6 3.9313 -6.4614 6.3922 17 8 2.7812 -6.6250 6.7413 18 7 4.9403 -6.7687 7.2312 19 6 4.6668 -7.2665 8.4790 20 1 3.6428 -7.4121 8.7897 21 6 5.7071 -7.5838 9.3438 22 7 6.9531 -7.4071 8.9655 23 14 5.3345 -8.2615 11.0442 24 1 4.5750 -9.5311 10.9156 25 1 6.6074 -8.5175 11.7649 26 1 4.5248 -7.2751 11.8037 27 6 2.0408 -5.4494 2.0527 28 6 2.3248 -4.9200 0.6434 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3633 -0.8871 -0.5187 31 1 -0.3633 0.8928 -0.5089 32 1 1.9868 2.1058 -0.0004 33 1 4.5663 -1.2860 -0.0087 34 1 4.6705 -3.4483 1.2942 35 1 3.7506 -1.9701 1.6761 36 1 2.4982 -3.1519 3.4282 37 1 4.2413 -3.3782 3.7126 38 1 4.1313 -5.5795 2.5573 39 1 2.4085 -6.4965 4.2633 40 1 4.8266 -6.6372 4.4633 41 1 4.7890 -4.9816 5.1157 42 1 5.8600 -6.6376 6.9523 43 1 7.6794 -7.6282 9.5693 44 1 1.1411 -4.9754 2.4450 45 1 1.8956 -6.5290 2.0134 46 1 1.4441 -5.0595 0.0164 47 1 3.1692 -5.4576 0.2122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203692554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:36 Heat of formation + Delta-G solvation = -50.344799 kcal Electronic energy + Delta-G solvation = -28272.856848 eV Core-core repulsion = 24261.938661 eV Total energy + Delta-G solvation = -4010.918186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19222 -40.72846 -40.09410 -38.63438 -36.30121 -35.73173 -33.39415 -33.29550 -32.82178 -31.90916 -30.46325 -28.32927 -27.44784 -26.37227 -24.94227 -24.39204 -22.87782 -21.39634 -21.08890 -20.70710 -19.89165 -19.54878 -18.76356 -17.98307 -17.44318 -16.87581 -16.55758 -16.42860 -16.24157 -16.08812 -15.51932 -15.30895 -15.09928 -14.94395 -14.81952 -14.60189 -14.27178 -13.99203 -13.92017 -13.77057 -13.58961 -13.49535 -13.31677 -13.20521 -13.05727 -12.87364 -12.54069 -12.42568 -12.33458 -12.16579 -12.12024 -11.76163 -11.50057 -11.42671 -10.88985 -10.33140 -10.01026 -9.71977 -9.43049 -9.30438 -9.11120 -8.46182 -5.94733 0.93079 1.40050 1.42034 1.51832 1.52745 1.97968 2.06378 2.29334 2.35135 2.54864 2.92135 3.21156 3.48774 3.69199 3.86404 3.96811 4.04179 4.12710 4.25642 4.29928 4.31858 4.36531 4.45239 4.49396 4.55989 4.62288 4.66266 4.69260 4.73778 4.83667 4.87517 4.89618 4.96139 5.02683 5.15135 5.18214 5.31395 5.38217 5.41630 5.61852 5.84114 5.92772 6.01973 6.15774 6.41706 6.48973 6.61267 6.74629 7.13383 7.28156 7.57247 8.13122 8.70881 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002003 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.529293 B =13972.881717 C =14465.022950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.159 4.159 3 C -0.006 4.006 4 N -0.534 5.534 5 H 0.438 0.562 6 C 0.062 3.938 7 C -0.264 4.264 8 C 0.586 3.414 9 O -0.593 6.593 10 N -0.607 5.607 11 C 0.106 3.894 12 C -0.120 4.120 13 C 0.091 3.909 14 N -0.683 5.683 15 C 0.068 3.932 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.273 1.273 27 C -0.128 4.128 28 C 0.119 3.881 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.199 0.801 33 H 0.203 0.797 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.344 0.656 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 17.052 -21.427 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.165 4.165 3 C -0.134 4.134 4 N -0.130 5.130 5 H 0.279 0.721 6 C -0.076 4.076 7 C -0.274 4.274 8 C 0.377 3.623 9 O -0.475 6.475 10 N -0.339 5.339 11 C -0.016 4.016 12 C -0.159 4.159 13 C -0.018 4.018 14 N -0.316 5.316 15 C -0.064 4.064 16 C 0.224 3.776 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.198 1.198 27 C -0.166 4.166 28 C -0.004 4.004 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.216 0.784 33 H 0.220 0.780 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.163 0.837 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.090 17.446 -21.150 27.417 hybrid contribution 0.569 -1.175 0.571 1.425 sum 0.660 16.271 -20.579 26.242 Atomic orbital electron populations 1.20114 0.90270 1.02241 1.01368 1.20749 0.95763 0.91510 1.08461 1.21938 0.82497 0.99703 1.09302 1.41540 1.08674 1.06431 1.56310 0.72146 1.22254 0.97938 0.84524 1.02863 1.20316 0.94872 0.91734 1.20521 1.17948 0.80843 0.85348 0.78111 1.90703 1.30357 1.81274 1.45177 1.48088 1.37179 1.06902 1.41718 1.22247 0.89964 1.01910 0.87475 1.21980 1.02332 0.94626 0.96949 1.21580 0.97619 0.95782 0.86806 1.60101 1.16513 1.37244 1.17694 1.21572 0.92662 1.01431 0.90775 1.20961 0.85135 0.82991 0.88534 1.90499 1.22388 1.59689 1.78675 1.41921 1.08397 1.57081 1.13601 1.19611 0.94231 1.40915 0.91675 0.90520 1.26014 0.94377 0.97432 1.03378 1.69656 0.98966 1.48560 1.38787 0.85013 0.77761 0.78619 0.77091 1.19776 1.19377 1.19823 1.22007 0.98134 1.01788 0.94706 1.21542 1.02367 0.80110 0.96387 0.92378 0.93737 0.89981 0.78425 0.78028 0.88388 0.87658 0.93308 0.89918 0.91721 0.83710 0.91336 0.87630 0.76872 0.91264 0.92899 0.89714 0.90518 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 10.33 71.24 0.74 -0.94 16 2 C -0.16 -3.13 6.36 -18.52 -0.12 -3.25 16 3 C -0.01 -0.06 11.82 83.12 0.98 0.92 16 4 N -0.53 -3.92 5.90 -194.56 -1.15 -5.07 16 5 H 0.44 -0.19 8.96 -92.71 -0.83 -1.02 16 6 C 0.06 0.70 9.52 83.92 0.80 1.50 16 7 C -0.26 -5.48 5.40 -19.04 -0.10 -5.58 16 8 C 0.59 15.40 7.54 86.61 0.65 16.06 16 9 O -0.59 -20.51 15.55 -4.13 -0.06 -20.58 16 10 N -0.61 -12.65 2.97 -822.15 -2.44 -15.09 16 11 C 0.11 1.58 5.50 86.51 0.48 2.06 16 12 C -0.12 -2.45 5.60 30.82 0.17 -2.28 16 13 C 0.09 2.04 2.45 44.95 0.11 2.15 16 14 N -0.68 -21.24 5.93 -495.45 -2.94 -24.18 16 15 C 0.07 2.23 5.96 85.56 0.51 2.74 16 16 C 0.44 20.63 7.82 87.66 0.69 21.32 16 17 O -0.63 -35.06 15.78 -3.09 -0.05 -35.11 16 18 N -0.57 -29.14 5.29 -306.98 -1.62 -30.77 16 19 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 23 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 C -0.13 -2.80 5.36 30.67 0.16 -2.63 16 28 C 0.12 2.42 6.44 86.36 0.56 2.97 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.16 7.17 -2.39 -0.02 1.15 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.20 0.98 7.27 -2.91 -0.02 0.95 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.35 4.76 -2.39 -0.01 1.34 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.58 7.42 -2.39 -0.02 1.57 16 38 H 0.06 1.22 7.80 -2.39 -0.02 1.20 16 39 H 0.34 11.44 8.03 -89.69 -0.72 10.72 16 40 H 0.07 1.94 8.05 -2.39 -0.02 1.92 16 41 H 0.11 3.07 7.41 -2.39 -0.02 3.05 16 42 H 0.40 18.98 7.90 -92.71 -0.73 18.24 16 43 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 46 H 0.08 1.86 7.00 -2.39 -0.02 1.84 16 47 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -81.26 382.87 -0.30 -81.56 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -1.25 Total: 36.46 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.91 Total: 16.67 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -7.87 Total: -123.84 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -0.11 Total: -55.69 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -81.26 -0.30 -81.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203692554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.213 kcal (2) G-P(sol) polarization free energy of solvation -81.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds