Wall clock time and date at job start Tue Mar 31 2020 18:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34488 * 126.83160 * 2 1 4 4 N 1.36448 * 108.85141 * 180.02562 * 3 2 1 5 5 H 0.96997 * 124.84655 * 179.97438 * 4 3 2 6 6 C 1.34660 * 110.29970 * 359.74330 * 4 3 2 7 7 C 1.36766 * 108.39456 * 0.41107 * 6 4 3 8 8 C 1.47263 * 126.93964 * 179.86937 * 7 6 4 9 9 O 1.21622 * 120.00049 * 179.68776 * 8 7 6 10 10 N 1.34781 * 119.99921 * 359.68546 * 8 7 6 11 11 C 1.46499 * 119.99679 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.27752 * 35.63603 * 11 10 8 13 13 C 1.53998 * 110.30802 * 273.54402 * 11 10 8 14 14 N 1.47901 * 107.05580 * 242.21207 * 13 11 10 15 15 C 1.46908 * 110.99376 * 214.15722 * 14 13 11 16 16 C 1.50696 * 109.47292 * 307.39458 * 15 14 13 17 17 O 1.21292 * 119.99879 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99872 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99717 * 180.02562 * 18 16 15 20 20 H 1.08008 * 119.99997 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00100 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99783 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00403 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46998 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47337 * 119.99275 * 23 21 19 26 26 H 1.48496 * 109.47067 * 240.00007 * 23 21 19 27 27 C 1.48531 * 105.82310 * 334.66757 * 14 13 11 28 28 C 1.54781 * 110.47727 * 157.64323 * 11 10 8 29 29 H 1.08996 * 110.65506 * 22.48578 * 28 11 10 30 30 C 1.53001 * 110.87530 * 259.15054 * 28 11 10 31 31 H 1.09000 * 109.47157 * 269.98520 * 1 2 3 32 32 H 1.08999 * 109.46960 * 29.97822 * 1 2 3 33 33 H 1.08994 * 109.47368 * 149.97792 * 1 2 3 34 34 H 1.07999 * 125.57368 * 0.03368 * 3 2 1 35 35 H 1.08003 * 125.80168 * 180.29601 * 6 4 3 36 36 H 0.96994 * 120.00207 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.91043 * 122.86066 * 13 11 10 38 38 H 1.08993 * 110.07966 * 1.65724 * 13 11 10 39 39 H 1.08996 * 109.47381 * 67.40051 * 15 14 13 40 40 H 1.09003 * 109.46570 * 187.39541 * 15 14 13 41 41 H 0.96997 * 120.00025 * 359.97438 * 18 16 15 42 42 H 0.96995 * 120.00219 * 180.02562 * 22 21 19 43 43 H 1.09002 * 110.66657 * 157.64408 * 27 14 13 44 44 H 1.09001 * 110.67154 * 280.61087 * 27 14 13 45 45 H 1.09004 * 109.47404 * 305.06019 * 30 28 11 46 46 H 1.09000 * 109.47521 * 65.05951 * 30 28 11 47 47 H 1.09001 * 109.47417 * 185.05843 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0011 6 6 3.6656 -0.6902 0.0047 7 6 2.3863 -1.1740 -0.0005 8 6 1.9749 -2.5880 -0.0001 9 8 0.7936 -2.8776 0.0006 10 7 2.9074 -3.5612 -0.0007 11 6 2.4980 -4.9678 0.0002 12 1 1.5940 -5.0985 -0.5946 13 6 2.2643 -5.4555 1.4421 14 7 3.2379 -6.5394 1.6965 15 6 2.6662 -7.5635 2.5812 16 6 2.1221 -6.9069 3.8237 17 8 2.2021 -5.7042 3.9588 18 7 1.5464 -7.6562 4.7848 19 6 1.0509 -7.0589 5.9150 20 1 1.1222 -5.9879 6.0352 21 6 0.4579 -7.8313 6.9061 22 7 0.3717 -9.1345 6.7600 23 14 -0.2166 -7.0176 8.4463 24 1 0.0032 -5.5510 8.3680 25 1 -1.6713 -7.2952 8.5563 26 1 0.4825 -7.5594 9.6391 27 6 3.5664 -7.1096 0.3649 28 6 3.6337 -5.8626 -0.5522 29 1 4.5980 -5.3639 -0.4549 30 6 3.3657 -6.2467 -2.0087 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5141 34 1 1.9868 2.1059 0.0005 35 1 4.5664 -1.2860 0.0100 36 1 3.8494 -3.3302 -0.0017 37 1 1.2484 -5.8372 1.5448 38 1 2.4266 -4.6381 2.1445 39 1 1.8608 -8.0833 2.0625 40 1 3.4412 -8.2784 2.8577 41 1 1.4821 -8.6180 4.6766 42 1 -0.0426 -9.6737 7.4516 43 1 4.5293 -7.6198 0.3918 44 1 2.7815 -7.7892 0.0331 45 1 2.3842 -6.7144 -2.0865 46 1 3.3924 -5.3524 -2.6312 47 1 4.1297 -6.9472 -2.3463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211025303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:18 Heat of formation + Delta-G solvation = -20.665251 kcal Electronic energy + Delta-G solvation = -28820.526913 eV Core-core repulsion = 24810.895728 eV Total energy + Delta-G solvation = -4009.631185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29690 -39.81820 -38.48301 -37.42013 -34.35889 -33.76906 -32.53671 -32.48080 -31.19740 -30.24004 -28.44770 -27.16332 -26.61399 -25.24736 -24.04361 -22.78406 -21.09744 -20.60687 -19.84833 -19.13406 -18.95452 -18.42485 -17.75497 -16.49296 -16.26942 -15.82329 -15.22484 -14.88882 -14.75598 -14.52029 -14.13650 -14.03927 -13.88474 -13.63278 -13.56003 -13.23360 -13.14937 -12.97528 -12.68156 -12.49977 -12.38794 -12.07428 -11.95420 -11.76175 -11.49683 -11.43765 -11.27616 -11.15484 -11.02841 -10.73010 -10.64703 -10.29210 -10.17504 -9.64220 -9.45947 -8.92483 -8.64077 -8.41108 -8.33202 -7.94082 -7.85631 -6.37069 -3.77407 1.70296 2.30467 3.02115 3.20208 3.30415 3.38270 3.38464 3.68875 3.95733 4.12579 4.31956 4.48842 4.67962 4.79658 4.89498 4.98593 5.02547 5.11707 5.29462 5.30050 5.39082 5.45733 5.47542 5.61295 5.62254 5.70980 5.77521 5.83541 5.86718 5.88106 5.97945 6.01583 6.05974 6.17377 6.20549 6.25335 6.33866 6.59339 6.70100 6.76932 6.88528 7.25250 7.28044 7.33280 7.60432 7.74879 8.11392 8.52944 8.66798 9.23224 9.59224 10.11167 10.80914 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.003020 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.222500 B = 9270.462402 C =11250.482975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.107 4.107 3 C -0.030 4.030 4 N -0.551 5.551 5 H 0.416 0.584 6 C 0.045 3.955 7 C -0.222 4.222 8 C 0.588 3.412 9 O -0.540 6.540 10 N -0.717 5.717 11 C 0.137 3.863 12 H 0.091 0.909 13 C 0.042 3.958 14 N -0.496 5.496 15 C 0.035 3.965 16 C 0.442 3.558 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.036 3.964 28 C -0.099 4.099 29 H 0.086 0.914 30 C -0.142 4.142 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.395 0.605 37 H 0.045 0.955 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.270 0.730 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.293 12.856 -18.959 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.157 4.157 4 N -0.145 5.145 5 H 0.252 0.748 6 C -0.091 4.091 7 C -0.233 4.233 8 C 0.377 3.623 9 O -0.417 6.417 10 N -0.368 5.368 11 C 0.032 3.968 12 H 0.109 0.891 13 C -0.086 4.086 14 N -0.220 5.220 15 C -0.096 4.096 16 C 0.227 3.773 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.092 4.092 28 C -0.119 4.119 29 H 0.105 0.895 30 C -0.199 4.199 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.229 0.771 37 H 0.063 0.937 38 H 0.125 0.875 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.225 0.775 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.935 13.610 -18.455 24.610 hybrid contribution -0.195 -0.378 0.553 0.697 sum 8.740 13.232 -17.902 23.916 Atomic orbital electron populations 1.20203 0.89320 1.02408 1.02227 1.20584 0.95709 0.90373 1.04714 1.21554 0.82439 0.99168 1.12574 1.41455 1.08258 1.06656 1.58123 0.74762 1.21903 0.98529 0.83866 1.04799 1.20418 0.92669 0.92934 1.17275 1.17392 0.85473 0.83968 0.75500 1.90756 1.17215 1.83651 1.50076 1.45826 1.09193 1.05599 1.76201 1.22042 0.97659 0.79907 0.97215 0.89115 1.23310 0.94062 0.96501 0.94741 1.64638 1.39538 1.08784 1.09024 1.22114 0.98669 0.94497 0.94350 1.19745 0.84140 0.87931 0.85462 1.90510 1.61579 1.14341 1.79798 1.41850 1.51676 1.09576 1.16952 1.19752 1.33800 0.94572 0.94450 0.87890 1.25252 0.97747 0.95355 0.99637 1.69621 1.44992 1.04350 1.35471 0.85810 0.78323 0.79484 0.80806 1.19220 1.20759 1.20781 1.23344 1.01276 0.95630 0.88976 1.22341 0.98816 0.95989 0.94718 0.89536 1.21768 1.01884 1.01423 0.94853 0.91621 0.92549 0.90278 0.81513 0.81184 0.77102 0.93662 0.87529 0.93270 0.89142 0.77497 0.91977 0.89908 0.93575 0.92401 0.92441 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.98 36.01 0.36 -0.67 16 2 C -0.11 -1.33 6.35 -102.54 -0.65 -1.98 16 3 C -0.03 -0.27 11.82 -16.82 -0.20 -0.47 16 4 N -0.55 -3.91 5.90 -12.85 -0.08 -3.99 16 5 H 0.42 1.41 8.96 -40.82 -0.37 1.04 16 6 C 0.05 0.41 11.40 -16.84 -0.19 0.21 16 7 C -0.22 -2.89 6.29 -103.35 -0.65 -3.54 16 8 C 0.59 9.16 7.80 -12.59 -0.10 9.06 16 9 O -0.54 -10.49 15.02 5.26 0.08 -10.41 16 10 N -0.72 -9.34 5.02 -53.52 -0.27 -9.61 16 11 C 0.14 1.95 2.88 -66.47 -0.19 1.76 16 12 H 0.09 1.39 7.32 -51.93 -0.38 1.01 16 13 C 0.04 0.78 4.86 -2.75 -0.01 0.77 16 14 N -0.50 -8.50 5.27 -231.89 -1.22 -9.72 16 15 C 0.04 0.66 5.48 -4.97 -0.03 0.63 16 16 C 0.44 10.81 7.36 -10.99 -0.08 10.72 16 17 O -0.58 -16.03 13.37 5.55 0.07 -15.95 16 18 N -0.56 -14.75 5.29 -10.96 -0.06 -14.81 16 19 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 20 H 0.10 3.11 7.16 -52.48 -0.38 2.74 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -25.13 13.05 55.50 0.72 -24.40 16 23 Si 0.93 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.04 0.46 6.00 -1.90 -0.01 0.44 16 28 C -0.10 -1.08 3.38 -88.66 -0.30 -1.38 16 29 H 0.09 0.85 7.75 -51.93 -0.40 0.45 16 30 C -0.14 -1.25 9.17 37.16 0.34 -0.91 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.13 6.85 -51.93 -0.36 0.77 16 34 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.17 0.95 7.45 -52.48 -0.39 0.56 16 36 H 0.39 3.92 7.30 -40.82 -0.30 3.63 16 37 H 0.04 0.94 7.59 -51.93 -0.39 0.55 16 38 H 0.11 2.37 6.52 -51.93 -0.34 2.03 16 39 H 0.05 0.85 7.89 -51.93 -0.41 0.44 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.56 7.75 -51.93 -0.40 0.16 16 45 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -36.59 385.51 -8.87 -45.46 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -6.95 Total: 14.50 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -1.96 Total: 6.51 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.90 Total: -62.54 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: 0.15 Total: -26.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.59 -8.87 -45.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211025303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.791 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds