Wall clock time and date at job start Tue Mar 31 2020 18:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34488 * 126.83160 * 2 1 4 4 N 1.36448 * 108.85141 * 180.02562 * 3 2 1 5 5 H 0.96997 * 124.84655 * 179.97438 * 4 3 2 6 6 C 1.34660 * 110.29970 * 359.74330 * 4 3 2 7 7 C 1.36766 * 108.39456 * 0.41107 * 6 4 3 8 8 C 1.47263 * 126.93964 * 179.86937 * 7 6 4 9 9 O 1.21622 * 120.00049 * 179.68776 * 8 7 6 10 10 N 1.34781 * 119.99921 * 359.68546 * 8 7 6 11 11 C 1.46499 * 119.99679 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.27752 * 35.63603 * 11 10 8 13 13 C 1.53998 * 110.30802 * 273.54402 * 11 10 8 14 14 N 1.47901 * 107.05580 * 242.21207 * 13 11 10 15 15 C 1.46908 * 110.99376 * 214.15722 * 14 13 11 16 16 C 1.50696 * 109.47292 * 307.39458 * 15 14 13 17 17 O 1.21292 * 119.99879 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99872 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99717 * 180.02562 * 18 16 15 20 20 H 1.08008 * 119.99997 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00100 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99783 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00403 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46998 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47337 * 119.99275 * 23 21 19 26 26 H 1.48496 * 109.47067 * 240.00007 * 23 21 19 27 27 C 1.48531 * 105.82310 * 334.66757 * 14 13 11 28 28 C 1.54781 * 110.47727 * 157.64323 * 11 10 8 29 29 H 1.08996 * 110.65506 * 22.48578 * 28 11 10 30 30 C 1.53001 * 110.87530 * 259.15054 * 28 11 10 31 31 H 1.09000 * 109.47157 * 269.98520 * 1 2 3 32 32 H 1.08999 * 109.46960 * 29.97822 * 1 2 3 33 33 H 1.08994 * 109.47368 * 149.97792 * 1 2 3 34 34 H 1.07999 * 125.57368 * 0.03368 * 3 2 1 35 35 H 1.08003 * 125.80168 * 180.29601 * 6 4 3 36 36 H 0.96994 * 120.00207 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.91043 * 122.86066 * 13 11 10 38 38 H 1.08993 * 110.07966 * 1.65724 * 13 11 10 39 39 H 1.08996 * 109.47381 * 67.40051 * 15 14 13 40 40 H 1.09003 * 109.46570 * 187.39541 * 15 14 13 41 41 H 0.96997 * 120.00025 * 359.97438 * 18 16 15 42 42 H 0.96995 * 120.00219 * 180.02562 * 22 21 19 43 43 H 1.09002 * 110.66657 * 157.64408 * 27 14 13 44 44 H 1.09001 * 110.67154 * 280.61087 * 27 14 13 45 45 H 1.09004 * 109.47404 * 305.06019 * 30 28 11 46 46 H 1.09000 * 109.47521 * 65.05951 * 30 28 11 47 47 H 1.09001 * 109.47417 * 185.05843 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0011 6 6 3.6656 -0.6902 0.0047 7 6 2.3863 -1.1740 -0.0005 8 6 1.9749 -2.5880 -0.0001 9 8 0.7936 -2.8776 0.0006 10 7 2.9074 -3.5612 -0.0007 11 6 2.4980 -4.9678 0.0002 12 1 1.5940 -5.0985 -0.5946 13 6 2.2643 -5.4555 1.4421 14 7 3.2379 -6.5394 1.6965 15 6 2.6662 -7.5635 2.5812 16 6 2.1221 -6.9069 3.8237 17 8 2.2021 -5.7042 3.9588 18 7 1.5464 -7.6562 4.7848 19 6 1.0509 -7.0589 5.9150 20 1 1.1222 -5.9879 6.0352 21 6 0.4579 -7.8313 6.9061 22 7 0.3717 -9.1345 6.7600 23 14 -0.2166 -7.0176 8.4463 24 1 0.0032 -5.5510 8.3680 25 1 -1.6713 -7.2952 8.5563 26 1 0.4825 -7.5594 9.6391 27 6 3.5664 -7.1096 0.3649 28 6 3.6337 -5.8626 -0.5522 29 1 4.5980 -5.3639 -0.4549 30 6 3.3657 -6.2467 -2.0087 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5141 34 1 1.9868 2.1059 0.0005 35 1 4.5664 -1.2860 0.0100 36 1 3.8494 -3.3302 -0.0017 37 1 1.2484 -5.8372 1.5448 38 1 2.4266 -4.6381 2.1445 39 1 1.8608 -8.0833 2.0625 40 1 3.4412 -8.2784 2.8577 41 1 1.4821 -8.6180 4.6766 42 1 -0.0426 -9.6737 7.4516 43 1 4.5293 -7.6198 0.3918 44 1 2.7815 -7.7892 0.0331 45 1 2.3842 -6.7144 -2.0865 46 1 3.3924 -5.3524 -2.6312 47 1 4.1297 -6.9472 -2.3463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211025303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:17 Heat of formation + Delta-G solvation = -50.593303 kcal Electronic energy + Delta-G solvation = -28821.824690 eV Core-core repulsion = 24810.895728 eV Total energy + Delta-G solvation = -4010.928962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.09166 -41.10783 -40.05726 -38.92464 -36.10577 -35.39279 -33.67115 -33.33266 -33.29118 -31.18332 -29.76874 -28.47705 -27.45467 -26.83017 -25.50866 -23.91044 -22.29103 -21.78058 -20.90767 -20.73865 -20.03955 -19.82442 -19.15202 -17.73774 -17.63930 -17.19903 -16.67547 -16.54804 -16.15789 -15.93194 -15.53319 -15.42164 -15.01912 -14.87627 -14.65153 -14.45063 -14.12312 -14.07246 -13.96666 -13.61207 -13.55691 -13.31503 -13.26816 -13.20002 -13.03465 -12.93599 -12.63575 -12.44076 -12.31602 -12.24645 -12.13642 -11.81458 -11.64320 -11.51118 -10.87268 -10.30340 -10.09367 -10.01437 -9.52134 -9.35875 -9.16696 -8.49730 -5.98370 0.81172 1.33443 1.38174 1.50508 1.52864 2.01405 2.23738 2.26516 2.49645 2.60794 2.84491 3.16618 3.25338 3.57955 3.72650 4.00758 4.02813 4.08360 4.20521 4.30366 4.33939 4.36608 4.46766 4.47607 4.52363 4.61540 4.67973 4.75668 4.83755 4.87772 4.90901 4.92733 5.02839 5.13570 5.17650 5.21924 5.33246 5.37457 5.39219 5.63536 5.80257 5.83054 5.92684 5.97449 6.08439 6.57553 6.67994 6.76306 7.10004 7.41758 7.52152 8.08849 8.68157 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.003020 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.222500 B = 9270.462402 C =11250.482975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.156 4.156 3 C -0.008 4.008 4 N -0.531 5.531 5 H 0.439 0.561 6 C 0.073 3.927 7 C -0.274 4.274 8 C 0.579 3.421 9 O -0.596 6.596 10 N -0.704 5.704 11 C 0.144 3.856 12 H 0.074 0.926 13 C 0.053 3.947 14 N -0.505 5.505 15 C 0.046 3.954 16 C 0.435 3.565 17 O -0.617 6.617 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.276 1.276 25 H -0.270 1.270 26 H -0.266 1.266 27 C 0.035 3.965 28 C -0.083 4.083 29 H 0.108 0.892 30 C -0.136 4.136 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.202 0.798 35 H 0.208 0.792 36 H 0.412 0.588 37 H 0.005 0.995 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.112 0.888 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.181 13.372 -20.204 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.162 4.162 3 C -0.137 4.137 4 N -0.127 5.127 5 H 0.280 0.720 6 C -0.066 4.066 7 C -0.284 4.284 8 C 0.370 3.630 9 O -0.478 6.478 10 N -0.355 5.355 11 C 0.037 3.963 12 H 0.092 0.908 13 C -0.077 4.077 14 N -0.229 5.229 15 C -0.085 4.085 16 C 0.223 3.777 17 O -0.503 6.503 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.201 1.201 25 H -0.195 1.195 26 H -0.191 1.191 27 C -0.093 4.093 28 C -0.102 4.102 29 H 0.126 0.874 30 C -0.193 4.193 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.219 0.781 35 H 0.225 0.775 36 H 0.249 0.751 37 H 0.024 0.976 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.897 14.119 -19.723 27.017 hybrid contribution -1.053 -0.485 0.928 1.485 sum 10.843 13.634 -18.796 25.627 Atomic orbital electron populations 1.20090 0.90387 1.02111 1.01083 1.20818 0.95867 0.91748 1.07773 1.21944 0.82461 0.99662 1.09593 1.41511 1.08664 1.06396 1.56088 0.72014 1.22318 0.98061 0.84745 1.01462 1.20429 0.94997 0.91642 1.21329 1.17980 0.85011 0.85574 0.74444 1.90715 1.19539 1.84626 1.52876 1.45665 1.09832 1.04770 1.75234 1.21888 0.98984 0.81185 0.94208 0.90803 1.23014 0.92364 0.95748 0.96553 1.64613 1.38271 1.08523 1.11536 1.22032 0.99873 0.94688 0.91907 1.20842 0.82722 0.87611 0.86539 1.90498 1.62637 1.16312 1.80864 1.41912 1.52296 1.09807 1.17022 1.19661 1.36346 0.93742 0.96508 0.90722 1.26033 0.97201 0.95955 1.02006 1.69673 1.44787 1.05089 1.36509 0.84887 0.78197 0.77971 0.77367 1.20118 1.19523 1.19107 1.23554 1.02803 0.96478 0.86420 1.22347 0.98018 0.94250 0.95610 0.87376 1.21739 1.02312 1.02263 0.93027 0.93255 0.89785 0.93537 0.78121 0.77537 0.75055 0.97634 0.92065 0.91658 0.86303 0.76965 0.91215 0.87027 0.92799 0.93196 0.91825 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.10 9.98 71.24 0.71 -1.39 16 2 C -0.16 -3.92 6.35 -18.52 -0.12 -4.04 16 3 C -0.01 -0.13 11.82 83.12 0.98 0.85 16 4 N -0.53 -5.76 5.90 -194.56 -1.15 -6.90 16 5 H 0.44 1.00 8.96 -92.71 -0.83 0.17 16 6 C 0.07 1.12 11.40 83.91 0.96 2.08 16 7 C -0.27 -7.23 6.29 -19.04 -0.12 -7.35 16 8 C 0.58 19.27 7.80 86.62 0.68 19.95 16 9 O -0.60 -25.69 15.02 -4.10 -0.06 -25.75 16 10 N -0.70 -18.73 5.02 -441.47 -2.22 -20.95 16 11 C 0.14 4.19 2.88 45.94 0.13 4.33 16 12 H 0.07 2.42 7.32 -2.39 -0.02 2.41 16 13 C 0.05 2.07 4.86 86.45 0.42 2.49 16 14 N -0.50 -17.19 5.27 -887.56 -4.67 -21.86 16 15 C 0.05 1.72 5.48 85.55 0.47 2.19 16 16 C 0.44 22.21 7.36 87.66 0.64 22.85 16 17 O -0.62 -36.37 13.37 -3.07 -0.04 -36.41 16 18 N -0.57 -31.12 5.29 -306.98 -1.62 -32.74 16 19 C -0.33 -19.91 9.68 84.04 0.81 -19.10 16 20 H 0.07 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -51.27 13.05 21.66 0.28 -50.99 16 23 Si 0.99 44.87 29.55 68.60 2.03 46.89 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 C 0.03 0.79 6.00 86.65 0.52 1.31 16 28 C -0.08 -1.62 3.38 -9.52 -0.03 -1.65 16 29 H 0.11 1.70 7.75 -2.39 -0.02 1.68 16 30 C -0.14 -2.01 9.17 71.98 0.66 -1.35 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.50 6.85 -2.39 -0.02 1.48 16 34 H 0.20 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.21 1.49 7.45 -2.91 -0.02 1.47 16 36 H 0.41 7.65 7.30 -92.71 -0.68 6.98 16 37 H 0.01 0.24 7.59 -2.38 -0.02 0.22 16 38 H 0.06 2.95 6.52 -2.39 -0.02 2.94 16 39 H 0.07 2.23 7.89 -2.39 -0.02 2.21 16 40 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 41 H 0.40 20.32 7.90 -92.71 -0.73 19.59 16 42 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 1.17 7.75 -2.39 -0.02 1.16 16 45 H 0.05 0.83 8.11 -2.39 -0.02 0.81 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -88.34 385.51 -1.49 -89.83 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -1.22 Total: 37.92 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 7.18 Total: 20.96 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -9.38 Total: -133.44 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -0.10 Total: -62.16 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -88.34 -1.49 -89.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211025303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.239 kcal (2) G-P(sol) polarization free energy of solvation -88.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds