Wall clock time and date at job start Tue Mar 31 2020 18:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34474 * 126.83684 * 2 1 4 4 N 1.36453 * 108.85986 * 179.97438 * 3 2 1 5 5 H 0.96999 * 124.85193 * 179.97438 * 4 3 2 6 6 C 1.34661 * 110.29504 * 359.75080 * 4 3 2 7 7 C 1.36768 * 108.39488 * 0.40641 * 6 4 3 8 8 C 1.47270 * 126.94106 * 179.87179 * 7 6 4 9 9 O 1.21628 * 119.99769 * 140.39219 * 8 7 6 10 10 N 1.34775 * 119.99781 * 320.39124 * 8 7 6 11 11 C 1.46926 * 120.63041 * 354.54844 * 10 8 7 12 12 C 1.53195 * 108.77291 * 233.58260 * 11 10 8 13 13 C 1.53040 * 109.34222 * 305.38378 * 12 11 10 14 14 C 1.53044 * 109.53964 * 61.31385 * 13 12 11 15 15 H 1.08998 * 109.49183 * 58.65377 * 14 13 12 16 16 N 1.46896 * 109.49508 * 178.71816 * 14 13 12 17 17 C 1.46908 * 110.99676 * 204.93561 * 16 14 13 18 18 C 1.50702 * 109.46824 * 179.97438 * 17 16 14 19 19 O 1.21289 * 120.00355 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99520 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99686 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00235 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00109 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00223 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47079 * 90.00522 * 25 23 21 27 27 H 1.48499 * 109.47417 * 210.00242 * 25 23 21 28 28 H 1.48504 * 109.47196 * 330.00347 * 25 23 21 29 29 C 1.46922 * 120.62901 * 174.52038 * 10 8 7 30 30 H 1.08995 * 109.47599 * 270.02514 * 1 2 3 31 31 H 1.09004 * 109.46772 * 30.03065 * 1 2 3 32 32 H 1.09004 * 109.47064 * 150.02319 * 1 2 3 33 33 H 1.08007 * 125.57709 * 359.95789 * 3 2 1 34 34 H 1.07995 * 125.80290 * 180.29507 * 6 4 3 35 35 H 1.08995 * 109.58552 * 353.37196 * 11 10 8 36 36 H 1.09001 * 109.58307 * 113.79870 * 11 10 8 37 37 H 1.08997 * 109.49700 * 65.31512 * 12 11 10 38 38 H 1.08997 * 109.49675 * 185.41711 * 12 11 10 39 39 H 1.09003 * 109.43251 * 301.31208 * 13 12 11 40 40 H 1.08992 * 109.48827 * 181.35336 * 13 12 11 41 41 H 1.00902 * 111.00356 * 80.98423 * 16 14 13 42 42 H 1.09000 * 109.47230 * 300.00087 * 17 16 14 43 43 H 1.08995 * 109.46799 * 60.00385 * 17 16 14 44 44 H 0.97002 * 120.00365 * 0.02562 * 20 18 17 45 45 H 0.97003 * 120.00189 * 179.97438 * 24 23 21 46 46 H 1.09005 * 109.59030 * 6.63365 * 29 10 8 47 47 H 1.08993 * 109.70824 * 246.27426 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6551 0.0006 5 1 4.3840 1.2412 0.0003 6 6 3.6656 -0.6904 0.0065 7 6 2.3863 -1.1741 0.0006 8 6 1.9748 -2.5882 0.0013 9 8 1.0221 -2.9439 0.6685 10 7 2.6539 -3.4879 -0.7374 11 6 3.7301 -3.0562 -1.6396 12 6 3.4475 -3.6043 -3.0420 13 6 3.2622 -5.1215 -2.9654 14 6 2.0652 -5.4464 -2.0688 15 1 1.1701 -4.9719 -2.4710 16 7 1.8694 -6.9014 -2.0205 17 6 0.4744 -7.2346 -1.7026 18 6 0.3123 -8.7324 -1.6626 19 8 1.2651 -9.4515 -1.8773 20 7 -0.8913 -9.2727 -1.3872 21 6 -1.0387 -10.6352 -1.3503 22 1 -0.1902 -11.2756 -1.5415 23 6 -2.2794 -11.1924 -1.0659 24 7 -3.3117 -10.4134 -0.8328 25 14 -2.4804 -13.0489 -1.0163 26 1 -2.2221 -13.5381 0.3619 27 1 -3.8643 -13.4079 -1.4177 28 1 -1.5146 -13.6766 -1.9535 29 6 2.3323 -4.9192 -0.6554 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5135 33 1 1.9869 2.1058 -0.0006 34 1 4.5663 -1.2862 0.0127 35 1 3.7643 -1.9673 -1.6728 36 1 4.6842 -3.4431 -1.2815 37 1 2.5396 -3.1468 -3.4351 38 1 4.2860 -3.3729 -3.6988 39 1 4.1613 -5.5761 -2.5495 40 1 3.0847 -5.5171 -3.9654 41 1 2.5026 -7.3299 -1.3621 42 1 0.2127 -6.8144 -0.7315 43 1 -0.1817 -6.8189 -2.4673 44 1 -1.6533 -8.6976 -1.2152 45 1 -4.1779 -10.8023 -0.6346 46 1 1.4441 -5.0595 -0.0393 47 1 3.1707 -5.4597 -0.2162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211057207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:59 Heat of formation + Delta-G solvation = -22.614901 kcal Electronic energy + Delta-G solvation = -28516.471803 eV Core-core repulsion = 24506.756075 eV Total energy + Delta-G solvation = -4009.715728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60143 -39.88308 -38.28557 -37.42377 -35.05003 -33.79306 -32.74812 -32.43152 -31.18649 -30.75810 -29.28214 -26.83728 -26.19007 -25.75150 -24.06868 -22.62561 -22.32223 -20.62774 -20.17871 -19.14954 -18.87640 -18.09715 -17.81640 -16.79859 -16.24429 -15.86961 -15.28391 -15.08096 -14.65874 -14.55733 -14.37899 -14.33835 -14.06012 -13.97610 -13.68677 -13.48523 -13.35846 -13.08775 -12.94680 -12.87805 -12.57861 -12.49874 -12.16296 -11.64976 -11.56240 -11.51039 -11.40078 -11.03471 -11.00599 -10.92394 -10.65577 -10.34939 -10.16246 -9.95861 -9.45496 -8.96726 -8.78678 -8.56537 -8.37751 -7.96077 -7.89287 -6.35732 -3.76571 1.58639 2.12237 2.75843 2.91890 3.22170 3.24837 3.30373 3.36512 3.97234 4.12367 4.32803 4.49625 4.52971 4.72911 4.78151 4.79773 4.87101 4.91652 5.08632 5.14310 5.21727 5.25768 5.31943 5.35873 5.50204 5.54209 5.61552 5.65199 5.69081 5.75890 5.84383 5.86668 5.94414 5.96242 6.07495 6.19127 6.24153 6.34002 6.38328 6.50541 6.59013 7.08106 7.25749 7.36158 7.60667 7.68862 8.12071 8.21298 8.67318 9.23492 9.60677 10.12033 10.82030 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002215 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.732853 B =12639.392516 C =13663.531346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.114 4.114 3 C -0.023 4.023 4 N -0.552 5.552 5 H 0.417 0.583 6 C 0.039 3.961 7 C -0.217 4.217 8 C 0.588 3.412 9 O -0.537 6.537 10 N -0.606 5.606 11 C 0.100 3.900 12 C -0.133 4.133 13 C -0.107 4.107 14 C 0.076 3.924 15 H 0.080 0.920 16 N -0.657 5.657 17 C 0.048 3.952 18 C 0.442 3.558 19 O -0.585 6.585 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.082 3.918 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.350 0.650 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.393 0.607 45 H 0.271 0.729 46 H 0.093 0.907 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.042 27.161 -0.628 31.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C -0.151 4.151 4 N -0.146 5.146 5 H 0.253 0.747 6 C -0.097 4.097 7 C -0.228 4.228 8 C 0.377 3.623 9 O -0.413 6.413 10 N -0.340 5.340 11 C -0.023 4.023 12 C -0.172 4.172 13 C -0.145 4.145 14 C -0.035 4.035 15 H 0.099 0.901 16 N -0.288 5.288 17 C -0.085 4.085 18 C 0.227 3.773 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.042 4.042 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.951 26.434 -1.051 30.387 hybrid contribution -0.248 -0.083 1.114 1.144 sum 14.703 26.351 0.063 30.175 Atomic orbital electron populations 1.20132 0.89330 1.02081 1.02247 1.20539 0.95572 0.90326 1.05652 1.21557 0.82410 0.99173 1.11952 1.41484 1.08276 1.06616 1.58225 0.74652 1.21918 0.98378 0.83718 1.05647 1.20324 0.92926 0.92731 1.16843 1.17533 0.81796 0.84177 0.78772 1.90794 1.27541 1.80211 1.42798 1.47911 1.36425 1.06879 1.42791 1.21989 0.89752 1.00789 0.89744 1.21923 1.02478 0.96666 0.96151 1.21496 0.97854 0.94263 1.00919 1.21957 0.99205 0.88717 0.93667 0.90140 1.60261 1.05110 1.06655 1.56775 1.21748 0.90559 0.95988 1.00180 1.19793 0.84310 0.88845 0.84315 1.90514 1.39527 1.62195 1.54663 1.41870 1.08959 1.07800 1.61394 1.19699 0.96311 0.81953 1.44878 0.87932 1.25271 0.95027 1.00450 0.97282 1.69618 1.00932 1.35698 1.48000 0.85856 0.77465 0.82317 0.78622 1.20446 1.20950 1.19424 1.22512 1.02292 0.80052 0.99333 0.91377 0.92113 0.91478 0.81396 0.81019 0.89069 0.91581 0.91425 0.90592 0.91707 0.90605 0.83057 0.93558 0.89561 0.77402 0.91885 0.88912 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.20 36.00 0.37 -0.43 16 2 C -0.11 -1.15 6.36 -102.54 -0.65 -1.80 16 3 C -0.02 -0.16 11.82 -16.83 -0.20 -0.35 16 4 N -0.55 -2.74 5.90 -12.85 -0.08 -2.82 16 5 H 0.42 0.56 8.96 -40.82 -0.37 0.20 16 6 C 0.04 0.27 9.52 -16.84 -0.16 0.11 16 7 C -0.22 -2.36 5.41 -103.35 -0.56 -2.92 16 8 C 0.59 8.08 7.54 -12.59 -0.09 7.98 16 9 O -0.54 -9.60 16.37 5.25 0.09 -9.51 16 10 N -0.61 -6.98 2.97 -174.09 -0.52 -7.50 16 11 C 0.10 0.79 5.46 -3.71 -0.02 0.77 16 12 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 13 C -0.11 -1.14 5.49 -26.69 -0.15 -1.29 16 14 C 0.08 1.00 2.62 -67.59 -0.18 0.82 16 15 H 0.08 1.13 7.80 -51.93 -0.41 0.73 16 16 N -0.66 -10.87 5.88 -107.86 -0.63 -11.50 16 17 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 18 C 0.44 10.80 7.82 -10.98 -0.09 10.71 16 19 O -0.58 -16.22 15.78 5.55 0.09 -16.13 16 20 N -0.56 -14.82 5.29 -10.96 -0.06 -14.88 16 21 C -0.30 -8.56 9.68 -14.93 -0.14 -8.71 16 22 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.25 13.05 55.50 0.72 -24.53 16 25 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 29 C 0.08 1.06 5.70 -3.71 -0.02 1.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.17 0.75 7.24 -52.49 -0.38 0.37 16 35 H 0.09 0.60 4.76 -51.93 -0.25 0.36 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.35 5.90 8.11 -39.29 -0.32 5.58 16 42 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 43 H 0.09 1.52 8.06 -51.93 -0.42 1.10 16 44 H 0.39 9.96 7.90 -40.82 -0.32 9.63 16 45 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.09 1.43 6.47 -51.93 -0.34 1.10 16 47 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -36.36 384.84 -8.71 -45.07 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -6.92 Total: 13.41 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.18 Total: 6.04 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.56 Total: -61.22 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: 0.17 Total: -25.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.36 -8.71 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211057207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.458 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds