Wall clock time and date at job start Tue Mar 31 2020 18:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34474 * 126.83684 * 2 1 4 4 N 1.36453 * 108.85986 * 179.97438 * 3 2 1 5 5 H 0.96999 * 124.85193 * 179.97438 * 4 3 2 6 6 C 1.34661 * 110.29504 * 359.75080 * 4 3 2 7 7 C 1.36768 * 108.39488 * 0.40641 * 6 4 3 8 8 C 1.47270 * 126.94106 * 179.87179 * 7 6 4 9 9 O 1.21628 * 119.99769 * 140.39219 * 8 7 6 10 10 N 1.34775 * 119.99781 * 320.39124 * 8 7 6 11 11 C 1.46926 * 120.63041 * 354.54844 * 10 8 7 12 12 C 1.53195 * 108.77291 * 233.58260 * 11 10 8 13 13 C 1.53040 * 109.34222 * 305.38378 * 12 11 10 14 14 C 1.53044 * 109.53964 * 61.31385 * 13 12 11 15 15 H 1.08998 * 109.49183 * 58.65377 * 14 13 12 16 16 N 1.46896 * 109.49508 * 178.71816 * 14 13 12 17 17 C 1.46908 * 110.99676 * 204.93561 * 16 14 13 18 18 C 1.50702 * 109.46824 * 179.97438 * 17 16 14 19 19 O 1.21289 * 120.00355 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99520 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99686 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00235 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00109 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00223 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47079 * 90.00522 * 25 23 21 27 27 H 1.48499 * 109.47417 * 210.00242 * 25 23 21 28 28 H 1.48504 * 109.47196 * 330.00347 * 25 23 21 29 29 C 1.46922 * 120.62901 * 174.52038 * 10 8 7 30 30 H 1.08995 * 109.47599 * 270.02514 * 1 2 3 31 31 H 1.09004 * 109.46772 * 30.03065 * 1 2 3 32 32 H 1.09004 * 109.47064 * 150.02319 * 1 2 3 33 33 H 1.08007 * 125.57709 * 359.95789 * 3 2 1 34 34 H 1.07995 * 125.80290 * 180.29507 * 6 4 3 35 35 H 1.08995 * 109.58552 * 353.37196 * 11 10 8 36 36 H 1.09001 * 109.58307 * 113.79870 * 11 10 8 37 37 H 1.08997 * 109.49700 * 65.31512 * 12 11 10 38 38 H 1.08997 * 109.49675 * 185.41711 * 12 11 10 39 39 H 1.09003 * 109.43251 * 301.31208 * 13 12 11 40 40 H 1.08992 * 109.48827 * 181.35336 * 13 12 11 41 41 H 1.00902 * 111.00356 * 80.98423 * 16 14 13 42 42 H 1.09000 * 109.47230 * 300.00087 * 17 16 14 43 43 H 1.08995 * 109.46799 * 60.00385 * 17 16 14 44 44 H 0.97002 * 120.00365 * 0.02562 * 20 18 17 45 45 H 0.97003 * 120.00189 * 179.97438 * 24 23 21 46 46 H 1.09005 * 109.59030 * 6.63365 * 29 10 8 47 47 H 1.08993 * 109.70824 * 246.27426 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6551 0.0006 5 1 4.3840 1.2412 0.0003 6 6 3.6656 -0.6904 0.0065 7 6 2.3863 -1.1741 0.0006 8 6 1.9748 -2.5882 0.0013 9 8 1.0221 -2.9439 0.6685 10 7 2.6539 -3.4879 -0.7374 11 6 3.7301 -3.0562 -1.6396 12 6 3.4475 -3.6043 -3.0420 13 6 3.2622 -5.1215 -2.9654 14 6 2.0652 -5.4464 -2.0688 15 1 1.1701 -4.9719 -2.4710 16 7 1.8694 -6.9014 -2.0205 17 6 0.4744 -7.2346 -1.7026 18 6 0.3123 -8.7324 -1.6626 19 8 1.2651 -9.4515 -1.8773 20 7 -0.8913 -9.2727 -1.3872 21 6 -1.0387 -10.6352 -1.3503 22 1 -0.1902 -11.2756 -1.5415 23 6 -2.2794 -11.1924 -1.0659 24 7 -3.3117 -10.4134 -0.8328 25 14 -2.4804 -13.0489 -1.0163 26 1 -2.2221 -13.5381 0.3619 27 1 -3.8643 -13.4079 -1.4177 28 1 -1.5146 -13.6766 -1.9535 29 6 2.3323 -4.9192 -0.6554 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5135 33 1 1.9869 2.1058 -0.0006 34 1 4.5663 -1.2862 0.0127 35 1 3.7643 -1.9673 -1.6728 36 1 4.6842 -3.4431 -1.2815 37 1 2.5396 -3.1468 -3.4351 38 1 4.2860 -3.3729 -3.6988 39 1 4.1613 -5.5761 -2.5495 40 1 3.0847 -5.5171 -3.9654 41 1 2.5026 -7.3299 -1.3621 42 1 0.2127 -6.8144 -0.7315 43 1 -0.1817 -6.8189 -2.4673 44 1 -1.6533 -8.6976 -1.2152 45 1 -4.1779 -10.8023 -0.6346 46 1 1.4441 -5.0595 -0.0393 47 1 3.1707 -5.4597 -0.2162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211057207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:58 Heat of formation + Delta-G solvation = -50.721333 kcal Electronic energy + Delta-G solvation = -28517.690589 eV Core-core repulsion = 24506.756075 eV Total energy + Delta-G solvation = -4010.934514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22256 -40.83389 -40.11070 -38.61795 -36.39201 -35.77297 -33.44821 -33.38048 -33.22815 -31.68067 -30.26181 -27.87204 -27.47734 -26.63238 -25.83013 -23.46924 -23.27241 -21.59405 -21.07844 -20.78779 -19.92775 -19.54677 -18.74304 -17.95845 -17.56458 -17.18902 -16.59347 -16.34070 -16.16583 -15.97358 -15.53047 -15.29577 -15.25089 -15.06173 -14.63287 -14.60864 -14.31608 -14.10806 -14.01117 -13.78210 -13.66832 -13.57544 -13.43347 -13.24401 -13.20618 -12.86114 -12.43711 -12.37736 -12.29520 -12.12579 -11.89100 -11.78385 -11.62257 -11.52648 -10.99995 -10.38778 -10.04988 -9.93071 -9.52095 -9.23655 -9.12227 -8.48023 -5.97739 0.89699 1.37257 1.40516 1.50454 1.54363 1.90760 2.01123 2.27850 2.30923 2.52746 2.87227 3.18327 3.45216 3.69907 3.79436 4.00109 4.05307 4.07564 4.10474 4.25928 4.27071 4.30029 4.34641 4.45803 4.49992 4.54965 4.66028 4.72156 4.74478 4.82897 4.86173 4.94000 4.95475 5.08817 5.15399 5.27842 5.31136 5.35748 5.39398 5.50882 5.80891 5.86165 5.99947 6.04853 6.33115 6.47645 6.56466 6.74506 7.09405 7.25165 7.52221 8.06505 8.69604 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002215 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.732853 B =12639.392516 C =13663.531346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.159 4.159 3 C -0.001 4.001 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.065 3.935 7 C -0.263 4.263 8 C 0.580 3.420 9 O -0.597 6.597 10 N -0.602 5.602 11 C 0.097 3.903 12 C -0.126 4.126 13 C -0.102 4.102 14 C 0.082 3.918 15 H 0.067 0.933 16 N -0.663 5.663 17 C 0.063 3.937 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.082 0.918 23 C -0.016 4.016 24 N -0.922 5.922 25 Si 0.997 3.003 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.088 3.912 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.201 0.799 34 H 0.204 0.796 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.347 0.653 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.059 0.941 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.536 29.376 -1.239 34.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.165 4.165 3 C -0.130 4.130 4 N -0.127 5.127 5 H 0.280 0.720 6 C -0.073 4.073 7 C -0.273 4.273 8 C 0.372 3.628 9 O -0.479 6.479 10 N -0.335 5.335 11 C -0.024 4.024 12 C -0.164 4.164 13 C -0.140 4.140 14 C -0.029 4.029 15 H 0.086 0.914 16 N -0.294 5.294 17 C -0.069 4.069 18 C 0.228 3.772 19 O -0.505 6.505 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.100 0.900 23 C -0.216 4.216 24 N -0.563 5.563 25 Si 0.820 3.180 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.195 1.195 29 C -0.037 4.037 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.218 0.782 34 H 0.220 0.780 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.167 0.833 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.493 28.713 -1.691 33.665 hybrid contribution -0.970 -0.683 1.291 1.753 sum 16.524 28.031 -0.400 32.541 Atomic orbital electron populations 1.20039 0.90430 1.01605 1.01293 1.20726 0.95624 0.91560 1.08613 1.21926 0.82416 0.99624 1.09030 1.41523 1.08667 1.06299 1.56212 0.71976 1.22221 0.97734 0.84564 1.02761 1.20259 0.95090 0.91198 1.20755 1.18129 0.81021 0.85666 0.78010 1.90747 1.30330 1.81342 1.45486 1.48006 1.36871 1.05789 1.42802 1.22306 0.89365 1.02080 0.88669 1.21905 1.03313 0.94265 0.96947 1.21478 0.96600 0.96390 0.99573 1.21990 1.00135 0.86335 0.94424 0.91445 1.60324 1.03545 1.08960 1.56591 1.21563 0.92538 0.91658 1.01179 1.20701 0.83154 0.91041 0.82335 1.90476 1.40442 1.63830 1.55796 1.41962 1.09719 1.07353 1.62011 1.19707 0.96470 0.82986 1.47210 0.90013 1.26138 0.94206 1.05161 0.96076 1.69692 1.01362 1.37573 1.47680 0.84867 0.77820 0.76449 0.78818 1.19550 1.19494 1.19520 1.22293 1.01347 0.81605 0.98487 0.92684 0.89681 0.94729 0.78180 0.77958 0.87223 0.88927 0.92572 0.87348 0.90746 0.91418 0.83323 0.92651 0.88320 0.77150 0.91260 0.92277 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 10.20 71.24 0.73 -0.88 16 2 C -0.16 -3.09 6.36 -18.52 -0.12 -3.21 16 3 C 0.00 -0.01 11.82 83.11 0.98 0.97 16 4 N -0.53 -3.02 5.90 -194.56 -1.15 -4.16 16 5 H 0.44 -1.11 8.96 -92.71 -0.83 -1.94 16 6 C 0.06 0.67 9.52 83.91 0.80 1.47 16 7 C -0.26 -5.48 5.41 -19.04 -0.10 -5.58 16 8 C 0.58 16.50 7.54 86.62 0.65 17.15 16 9 O -0.60 -23.24 16.37 -4.12 -0.07 -23.31 16 10 N -0.60 -13.66 2.97 -822.95 -2.45 -16.10 16 11 C 0.10 1.24 5.46 86.36 0.47 1.71 16 12 C -0.13 -1.71 6.08 30.67 0.19 -1.52 16 13 C -0.10 -2.02 5.49 30.62 0.17 -1.85 16 14 C 0.08 2.17 2.62 45.00 0.12 2.28 16 15 H 0.07 1.96 7.80 -2.39 -0.02 1.94 16 16 N -0.66 -22.34 5.88 -495.15 -2.91 -25.25 16 17 C 0.06 2.44 5.97 85.56 0.51 2.95 16 18 C 0.44 22.29 7.82 87.66 0.69 22.97 16 19 O -0.62 -35.48 15.78 -3.06 -0.05 -35.52 16 20 N -0.57 -31.28 5.29 -306.98 -1.62 -32.90 16 21 C -0.33 -19.75 9.68 84.04 0.81 -18.94 16 22 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 23 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 24 N -0.92 -52.07 13.05 21.66 0.28 -51.79 16 25 Si 1.00 44.36 29.55 68.60 2.03 46.38 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 C 0.09 2.32 5.70 86.36 0.49 2.82 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.20 0.66 8.06 -2.91 -0.02 0.63 16 34 H 0.20 0.77 7.24 -2.91 -0.02 0.75 16 35 H 0.11 1.04 4.76 -2.39 -0.01 1.03 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.35 11.95 8.11 -89.69 -0.73 11.22 16 42 H 0.06 2.05 7.56 -2.39 -0.02 2.04 16 43 H 0.10 3.57 8.06 -2.39 -0.02 3.55 16 44 H 0.39 20.79 7.90 -92.71 -0.73 20.06 16 45 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.06 1.98 6.47 -2.38 -0.02 1.96 16 47 H 0.08 1.89 8.04 -2.39 -0.02 1.87 16 Total: -1.00 -84.58 384.84 -0.34 -84.92 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -1.26 Total: 37.82 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 6.85 Total: 19.91 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -7.84 Total: -130.21 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -0.12 Total: -58.83 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -84.58 -0.34 -84.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211057207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.198 kcal (2) G-P(sol) polarization free energy of solvation -84.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds