Wall clock time and date at job start Tue Mar 31 2020 18:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34485 * 126.82590 * 2 1 4 4 N 1.36460 * 108.85205 * 179.71895 * 3 2 1 5 5 H 0.96989 * 124.84690 * 180.26966 * 4 3 2 6 6 C 1.34661 * 110.29256 * 0.44286 * 4 3 2 7 7 C 1.36768 * 108.39762 * 359.56063 * 6 4 3 8 8 C 1.47269 * 126.93633 * 180.26407 * 7 6 4 9 9 O 1.21626 * 119.99569 * 219.83596 * 8 7 6 10 10 N 1.34773 * 120.00111 * 39.83620 * 8 7 6 11 11 C 1.46927 * 120.63202 * 5.48640 * 10 8 7 12 12 C 1.53193 * 108.77431 * 126.36502 * 11 10 8 13 13 C 1.53041 * 109.31044 * 54.63981 * 12 11 10 14 14 C 1.53042 * 109.53495 * 298.62805 * 13 12 11 15 15 H 1.08992 * 109.50300 * 301.38520 * 14 13 12 16 16 N 1.46901 * 109.49708 * 181.31873 * 14 13 12 17 17 C 1.46903 * 111.00003 * 155.00543 * 16 14 13 18 18 C 1.50703 * 109.47050 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00157 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00031 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99932 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00000 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99879 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99714 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00034 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47208 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46777 * 120.00384 * 25 23 21 28 28 H 1.48502 * 109.47233 * 240.00602 * 25 23 21 29 29 C 1.46923 * 120.62754 * 185.20363 * 10 8 7 30 30 H 1.09010 * 109.46988 * 270.02005 * 1 2 3 31 31 H 1.08994 * 109.47522 * 30.02042 * 1 2 3 32 32 H 1.08998 * 109.47070 * 150.02818 * 1 2 3 33 33 H 1.07999 * 125.57942 * 359.97438 * 3 2 1 34 34 H 1.08000 * 125.79264 * 179.82272 * 6 4 3 35 35 H 1.08995 * 109.58635 * 246.15607 * 11 10 8 36 36 H 1.09003 * 109.58386 * 6.43660 * 11 10 8 37 37 H 1.08998 * 109.49574 * 174.58122 * 12 11 10 38 38 H 1.08997 * 109.49759 * 294.68392 * 12 11 10 39 39 H 1.08991 * 109.46533 * 58.64867 * 13 12 11 40 40 H 1.09003 * 109.46097 * 178.63211 * 13 12 11 41 41 H 1.00894 * 111.00279 * 31.04630 * 16 14 13 42 42 H 1.09001 * 109.46813 * 299.99577 * 17 16 14 43 43 H 1.08993 * 109.47085 * 60.00004 * 17 16 14 44 44 H 0.97000 * 119.99854 * 359.97438 * 20 18 17 45 45 H 0.97003 * 119.99817 * 179.97438 * 24 23 21 46 46 H 1.08999 * 109.59127 * 353.42502 * 29 10 8 47 47 H 1.09009 * 109.58682 * 113.84657 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6111 0.6554 0.0063 5 1 4.3838 1.2415 0.0114 6 6 3.6656 -0.6901 0.0007 7 6 2.3864 -1.1739 0.0005 8 6 1.9751 -2.5880 0.0007 9 8 1.0288 -2.9461 -0.6743 10 7 2.6472 -3.4852 0.7487 11 6 3.7144 -3.0504 1.6601 12 6 3.4176 -3.5932 3.0616 13 6 3.2335 -5.1108 2.9880 14 6 2.0450 -5.4387 2.0812 15 1 1.1462 -4.9629 2.4731 16 7 1.8496 -6.8940 2.0363 17 6 0.4573 -7.2282 1.7078 18 6 0.2955 -8.7261 1.6715 19 8 1.2464 -9.4445 1.8966 20 7 -0.9060 -9.2675 1.3888 21 6 -1.0531 -10.6301 1.3553 22 1 -0.2063 -11.2698 1.5557 23 6 -2.2919 -11.1882 1.0644 24 7 -3.3223 -10.4099 0.8210 25 14 -2.4922 -13.0449 1.0180 26 1 -1.1907 -13.6910 1.3246 27 1 -3.5000 -13.4594 2.0269 28 1 -2.9452 -13.4603 -0.3339 29 6 2.3225 -4.9161 0.6728 30 1 -0.3633 0.0004 1.0278 31 1 -0.3634 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5134 33 1 1.9866 2.1060 -0.0004 34 1 4.5665 -1.2857 0.0011 35 1 4.6720 -3.4385 1.3131 36 1 3.7500 -1.9613 1.6878 37 1 4.2495 -3.3596 3.7259 38 1 2.5059 -3.1343 3.4439 39 1 4.1364 -5.5669 2.5823 40 1 3.0462 -5.5028 3.9877 41 1 2.1292 -7.3234 2.9054 42 1 -0.2052 -6.8099 2.4655 43 1 0.2038 -6.8113 0.7332 44 1 -1.6667 -8.6930 1.2092 45 1 -4.1871 -10.7995 0.6176 46 1 1.4384 -5.0578 0.0512 47 1 3.1643 -5.4596 0.2436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211057208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:01 Heat of formation + Delta-G solvation = -50.471450 kcal Electronic energy + Delta-G solvation = -28509.269255 eV Core-core repulsion = 24498.345577 eV Total energy + Delta-G solvation = -4010.923678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20869 -40.80011 -40.11519 -38.61553 -36.39445 -35.77522 -33.44232 -33.36471 -33.20570 -31.72061 -30.26422 -27.95247 -27.46839 -26.69407 -25.82999 -23.45931 -23.23179 -21.45201 -21.05255 -20.74315 -19.92291 -19.55103 -18.74614 -17.97401 -17.52949 -17.09342 -16.70227 -16.27184 -16.21184 -15.99389 -15.59654 -15.34456 -15.20624 -15.06662 -14.86686 -14.56266 -14.14491 -14.06487 -13.98432 -13.81637 -13.57486 -13.55314 -13.48732 -13.25345 -13.15064 -12.92087 -12.48381 -12.42217 -12.31948 -12.11512 -11.92577 -11.83952 -11.53616 -11.46947 -10.92990 -10.39036 -10.04793 -9.78694 -9.49303 -9.36097 -9.11687 -8.48295 -5.97975 0.91607 1.35785 1.40561 1.51287 1.55863 1.91166 2.00373 2.27855 2.32672 2.53838 2.88263 3.18155 3.45059 3.65308 3.90305 4.00226 4.02153 4.07081 4.15131 4.25700 4.28472 4.31191 4.38046 4.46422 4.49077 4.57029 4.64523 4.70884 4.81233 4.86330 4.88244 4.96552 4.97437 5.06566 5.13464 5.15769 5.31159 5.33124 5.39311 5.52094 5.82544 5.86916 6.01117 6.05032 6.36398 6.51008 6.56245 6.75560 7.09312 7.27763 7.51987 8.06179 8.69603 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.002214 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.796466 B =12642.407421 C =13665.797631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.158 4.158 3 C -0.002 4.002 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.064 3.936 7 C -0.262 4.262 8 C 0.581 3.419 9 O -0.597 6.597 10 N -0.605 5.605 11 C 0.096 3.904 12 C -0.124 4.124 13 C -0.117 4.117 14 C 0.081 3.919 15 H 0.035 0.965 16 N -0.669 5.669 17 C 0.065 3.935 18 C 0.441 3.559 19 O -0.618 6.618 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.082 0.918 23 C -0.017 4.017 24 N -0.922 5.922 25 Si 0.998 3.002 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.271 1.271 29 C 0.127 3.873 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.201 0.799 34 H 0.204 0.796 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.353 0.647 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.056 0.944 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.196 29.339 3.359 34.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.165 4.165 3 C -0.130 4.130 4 N -0.127 5.127 5 H 0.280 0.720 6 C -0.073 4.073 7 C -0.272 4.272 8 C 0.373 3.627 9 O -0.479 6.479 10 N -0.337 5.337 11 C -0.025 4.025 12 C -0.163 4.163 13 C -0.155 4.155 14 C -0.029 4.029 15 H 0.053 0.947 16 N -0.303 5.303 17 C -0.068 4.068 18 C 0.228 3.772 19 O -0.505 6.505 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.100 0.900 23 C -0.216 4.216 24 N -0.563 5.563 25 Si 0.821 3.179 26 H -0.195 1.195 27 H -0.194 1.194 28 H -0.196 1.196 29 C 0.003 3.997 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.218 0.782 34 H 0.220 0.780 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.173 0.827 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.476 28.685 2.479 33.681 hybrid contribution -1.380 -0.687 0.416 1.597 sum 16.096 27.998 2.895 32.425 Atomic orbital electron populations 1.20123 0.90488 1.02046 1.01498 1.20720 0.95638 0.91505 1.08588 1.21931 0.82422 0.99614 1.09068 1.41517 1.08661 1.06282 1.56265 0.71991 1.22217 0.97741 0.84556 1.02782 1.20238 0.95099 0.91182 1.20717 1.18119 0.80872 0.85605 0.78150 1.90740 1.30645 1.81186 1.45305 1.48047 1.37290 1.06133 1.42234 1.22299 0.89691 1.02077 0.88482 1.21884 1.03377 0.93902 0.97098 1.21710 0.97332 0.97488 0.98932 1.21749 0.98715 0.86644 0.95838 0.94673 1.59924 1.19858 1.09279 1.41223 1.21549 0.91112 0.91679 1.02421 1.20684 0.82981 0.90990 0.82511 1.90475 1.40310 1.63849 1.55828 1.41971 1.09866 1.07369 1.61879 1.19744 0.96607 0.82948 1.46976 0.90004 1.26143 0.94226 1.05177 0.96071 1.69701 1.01537 1.37517 1.47580 0.84806 0.78342 0.76442 0.78330 1.19524 1.19430 1.19648 1.21281 1.01351 0.80182 0.96882 0.92010 0.89981 0.94296 0.78203 0.77983 0.88992 0.87177 0.87113 0.92532 0.90040 0.90911 0.82684 0.92029 0.89236 0.77170 0.91266 0.92565 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.33 71.24 0.74 -1.05 16 2 C -0.16 -3.12 6.36 -18.52 -0.12 -3.24 16 3 C 0.00 -0.02 11.82 83.11 0.98 0.97 16 4 N -0.53 -3.16 5.90 -194.55 -1.15 -4.31 16 5 H 0.44 -1.00 8.96 -92.72 -0.83 -1.83 16 6 C 0.06 0.70 9.52 83.91 0.80 1.50 16 7 C -0.26 -5.58 5.40 -19.04 -0.10 -5.68 16 8 C 0.58 16.96 7.54 86.62 0.65 17.62 16 9 O -0.60 -23.73 15.54 -4.11 -0.06 -23.80 16 10 N -0.60 -14.34 2.98 -823.78 -2.45 -16.79 16 11 C 0.10 1.27 5.48 86.36 0.47 1.74 16 12 C -0.12 -1.62 6.08 30.67 0.19 -1.44 16 13 C -0.12 -2.16 5.17 30.62 0.16 -2.01 16 14 C 0.08 2.17 2.63 44.85 0.12 2.29 16 15 H 0.04 1.02 7.80 -2.39 -0.02 1.01 16 16 N -0.67 -22.69 5.94 -495.92 -2.94 -25.63 16 17 C 0.07 2.53 5.97 85.56 0.51 3.05 16 18 C 0.44 22.38 7.82 87.66 0.69 23.06 16 19 O -0.62 -35.45 15.78 -3.06 -0.05 -35.50 16 20 N -0.57 -31.37 5.29 -306.98 -1.62 -32.99 16 21 C -0.33 -19.72 9.68 84.04 0.81 -18.90 16 22 H 0.08 5.11 7.16 -2.91 -0.02 5.09 16 23 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 24 N -0.92 -52.13 13.05 21.66 0.28 -51.85 16 25 Si 1.00 44.39 29.55 68.60 2.03 46.42 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 C 0.13 3.65 5.88 86.22 0.51 4.16 16 30 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.11 7.16 -2.39 -0.02 1.09 16 33 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.20 0.87 7.26 -2.91 -0.02 0.85 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.11 1.07 4.76 -2.39 -0.01 1.06 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 41 H 0.35 11.90 8.03 -89.70 -0.72 11.18 16 42 H 0.06 2.19 8.06 -2.39 -0.02 2.17 16 43 H 0.09 3.48 7.55 -2.39 -0.02 3.46 16 44 H 0.39 20.85 7.90 -92.71 -0.73 20.12 16 45 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.06 2.03 6.46 -2.39 -0.02 2.01 16 47 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -84.88 383.08 -0.36 -85.23 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -1.25 Total: 37.61 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 6.87 Total: 21.61 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -7.89 Total: -131.57 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -0.11 Total: -59.29 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -84.88 -0.36 -85.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211057208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.762 kcal (2) G-P(sol) polarization free energy of solvation -84.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds