Wall clock time and date at job start Tue Mar 31 2020 17:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32175 * 119.14150 * 2 1 4 4 C 1.32358 * 120.60248 * 180.30948 * 3 2 1 5 5 C 1.47501 * 120.50874 * 179.69922 * 4 3 2 6 6 O 1.21603 * 120.00379 * 179.72313 * 5 4 3 7 7 N 1.34780 * 120.00056 * 359.71988 * 5 4 3 8 8 C 1.46495 * 120.00168 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.05610 * 326.41614 * 8 7 5 10 10 C 1.53870 * 110.03350 * 87.83422 * 8 7 5 11 11 C 1.54269 * 106.59902 * 119.28699 * 10 8 7 12 12 C 1.55031 * 104.28113 * 23.51530 * 11 10 8 13 13 C 1.54267 * 110.03163 * 205.00219 * 8 7 5 14 14 H 1.08999 * 110.48845 * 335.91349 * 13 8 7 15 15 C 1.53004 * 110.48676 * 98.42797 * 13 8 7 16 16 N 1.46504 * 109.46932 * 183.16084 * 15 13 8 17 17 C 1.36934 * 119.99567 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00537 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99798 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 299.99987 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00079 * 21 19 17 25 25 C 1.46679 * 118.98317 * 359.42312 * 4 3 2 26 26 O 1.21856 * 120.78514 * 180.29890 * 25 4 3 27 27 N 1.35146 * 118.43050 * 0.27596 * 25 4 3 28 28 H 0.97008 * 120.37128 * 179.97438 * 27 25 4 29 29 C 1.34898 * 119.26414 * 359.97438 * 27 25 4 30 30 C 1.50702 * 119.50128 * 179.97438 * 29 27 25 31 31 H 1.09004 * 109.46603 * 270.29685 * 1 2 3 32 32 H 1.09001 * 109.47078 * 30.29650 * 1 2 3 33 33 H 1.08993 * 109.46916 * 150.29606 * 1 2 3 34 34 H 0.96999 * 119.99977 * 0.02562 * 7 5 4 35 35 H 1.09003 * 110.03137 * 238.57026 * 10 8 7 36 36 H 1.09001 * 110.03262 * 359.95249 * 10 8 7 37 37 H 1.09003 * 110.48493 * 142.29131 * 11 10 8 38 38 H 1.08998 * 110.48349 * 264.93048 * 11 10 8 39 39 H 1.08997 * 110.87628 * 203.90258 * 12 11 10 40 40 H 1.09007 * 110.69387 * 80.48813 * 12 11 10 41 41 H 1.08998 * 109.47524 * 63.15728 * 15 13 8 42 42 H 1.08997 * 109.47093 * 303.15629 * 15 13 8 43 43 H 0.97000 * 119.99825 * 359.97438 * 16 15 13 44 44 H 0.97005 * 119.99717 * 0.02562 * 20 19 17 45 45 H 1.09004 * 109.47050 * 0.02562 * 30 29 27 46 46 H 1.09002 * 109.47099 * 120.00182 * 30 29 27 47 47 H 1.08992 * 109.47583 * 240.00345 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4738 1.1882 -0.0062 5 6 4.1900 2.4777 -0.0128 6 8 5.4058 2.4980 -0.0133 7 7 3.4967 3.6335 -0.0184 8 6 4.2080 4.9142 -0.0255 9 1 5.1356 4.8298 0.5406 10 6 4.5106 5.3410 -1.4726 11 6 3.7927 6.6883 -1.6940 12 6 3.6297 7.2737 -0.2678 13 6 3.3166 6.0171 0.5819 14 1 2.2639 5.7490 0.4928 15 6 3.6848 6.2564 2.0476 16 7 2.7769 7.2520 2.6228 17 6 2.9148 7.6287 3.9320 18 1 3.6925 7.1916 4.5408 19 6 2.0550 8.5725 4.4769 20 7 1.1075 9.1056 3.7350 21 14 2.2426 9.0859 6.2632 22 1 1.2101 10.0993 6.5980 23 1 2.0744 7.8990 7.1396 24 1 3.5927 9.6680 6.4717 25 6 4.2171 -0.0763 -0.0001 26 8 5.4356 -0.0835 0.0000 27 7 3.5185 -1.2332 0.0059 28 1 3.9815 -2.0857 0.0097 29 6 2.1703 -1.1894 0.0066 30 6 1.3860 -2.4763 0.0127 31 1 -0.3633 0.0053 1.0277 32 1 -0.3633 0.8873 -0.5184 33 1 -0.3633 -0.8926 -0.5092 34 1 2.5269 3.6174 -0.0176 35 1 5.5852 5.4637 -1.6087 36 1 4.1291 4.5948 -2.1695 37 1 4.4024 7.3486 -2.3108 38 1 2.8168 6.5296 -2.1528 39 1 2.8014 7.9813 -0.2306 40 1 4.5557 7.7435 0.0640 41 1 4.7102 6.6208 2.1099 42 1 3.5970 5.3218 2.6015 43 1 2.0782 7.6444 2.0762 44 1 1.0098 8.8387 2.8075 45 1 2.0745 -3.3214 0.0164 46 1 0.7587 -2.5153 0.9033 47 1 0.7576 -2.5231 -0.8766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272279486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:00 Heat of formation + Delta-G solvation = -30.473533 kcal Electronic energy + Delta-G solvation = -28791.289133 eV Core-core repulsion = 24781.232629 eV Total energy + Delta-G solvation = -4010.056504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.10323 -39.79062 -38.32773 -37.79567 -35.80516 -34.67347 -33.70005 -33.18903 -31.37411 -29.76887 -28.34183 -27.90264 -26.73636 -25.04963 -24.23730 -23.38924 -22.27249 -21.20960 -20.06751 -19.89229 -19.00298 -18.59143 -17.36379 -16.87001 -16.61781 -16.35964 -16.01807 -15.23757 -14.78215 -14.63877 -14.44297 -14.35921 -14.01305 -13.70050 -13.65139 -13.59353 -13.50792 -13.34141 -13.20310 -13.11482 -12.46975 -12.20453 -12.13557 -11.84218 -11.57504 -11.55887 -11.18739 -10.87676 -10.69976 -10.62909 -10.44365 -10.35689 -10.27948 -10.20006 -9.93228 -9.59034 -9.13643 -8.88496 -8.80852 -8.36366 -6.92459 -6.04195 -3.02620 -0.23143 1.30381 1.99864 2.51135 3.08739 3.47893 3.52085 3.56118 3.59941 3.77081 3.83921 3.86046 4.19341 4.61820 4.62881 4.71031 4.78782 4.83317 4.86502 5.02577 5.08042 5.12470 5.25151 5.43915 5.48762 5.61477 5.65499 5.69413 5.71339 5.80887 5.83908 5.91872 5.94905 5.97123 6.07318 6.11707 6.24558 6.30874 6.49780 6.56614 6.64439 6.80004 6.92517 7.10350 7.39574 7.63778 7.88307 8.28799 8.82735 9.30626 10.16888 10.32636 11.44767 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.002796 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.396402 B =10013.029838 C =11100.950335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.029 4.029 3 N -0.349 5.349 4 C 0.009 3.991 5 C 0.580 3.420 6 O -0.509 6.509 7 N -0.700 5.700 8 C 0.147 3.853 9 H 0.095 0.905 10 C -0.131 4.131 11 C -0.124 4.124 12 C -0.110 4.110 13 C -0.103 4.103 14 H 0.079 0.921 15 C 0.166 3.834 16 N -0.742 5.742 17 C -0.328 4.328 18 H 0.063 0.937 19 C -0.047 4.047 20 N -0.946 5.946 21 Si 1.080 2.920 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.296 1.296 25 C 0.496 3.504 26 O -0.482 6.482 27 N -0.586 5.586 28 H 0.421 0.579 29 C 0.154 3.846 30 C -0.128 4.128 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.408 0.592 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.022 0.978 42 H 0.019 0.981 43 H 0.367 0.633 44 H 0.254 0.746 45 H 0.078 0.922 46 H 0.102 0.898 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 -24.790 -13.745 28.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.155 4.155 3 N -0.066 5.066 4 C -0.159 4.159 5 C 0.363 3.637 6 O -0.382 6.382 7 N -0.352 5.352 8 C 0.043 3.957 9 H 0.113 0.887 10 C -0.170 4.170 11 C -0.162 4.162 12 C -0.148 4.148 13 C -0.122 4.122 14 H 0.097 0.903 15 C 0.039 3.961 16 N -0.387 5.387 17 C -0.459 4.459 18 H 0.081 0.919 19 C -0.244 4.244 20 N -0.592 5.592 21 Si 0.911 3.089 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.223 1.223 25 C 0.288 3.712 26 O -0.353 6.353 27 N -0.222 5.222 28 H 0.261 0.739 29 C 0.038 3.962 30 C -0.185 4.185 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.244 0.756 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.037 0.963 43 H 0.200 0.800 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.022 -23.087 -12.385 26.277 hybrid contribution 0.567 -2.231 -1.275 2.631 sum -1.455 -25.318 -13.660 28.805 Atomic orbital electron populations 1.20554 0.86751 1.03762 1.03350 1.20146 0.97993 0.85513 1.11886 1.67517 1.08401 1.29686 1.01002 1.23938 0.88855 0.93991 1.09160 1.17043 0.86579 0.82205 0.77878 1.90889 1.12316 1.86512 1.48492 1.45941 1.10770 1.04723 1.73799 1.21741 0.96446 0.81273 0.96272 0.88674 1.22549 1.01018 0.97348 0.96086 1.22402 1.00131 0.96006 0.97624 1.22475 1.02424 0.96666 0.93259 1.22446 0.99290 0.94017 0.96470 0.90268 1.20620 0.93692 0.92461 0.89340 1.42325 1.37143 1.48453 1.10787 1.20046 1.15585 1.22180 0.88065 0.91885 1.25745 0.95537 0.96720 1.06402 1.70885 1.34034 1.45778 1.08524 0.83246 0.75453 0.75976 0.74266 1.21066 1.22348 1.22309 1.19078 0.88440 0.83958 0.79746 1.91066 1.11389 1.85252 1.47626 1.43784 1.06364 1.12014 1.60019 0.73865 1.21562 0.83512 0.99027 0.92102 1.21217 1.00520 0.91320 1.05458 0.90490 0.90023 0.90727 0.75625 0.91159 0.91633 0.91750 0.91834 0.90974 0.90981 0.95994 0.96342 0.80014 0.93472 0.90297 0.87978 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 9.66 36.01 0.35 -0.07 16 2 C -0.03 -0.23 6.70 -83.18 -0.56 -0.79 16 3 N -0.35 -3.99 9.57 -4.84 -0.05 -4.04 16 4 C 0.01 0.13 6.96 -80.46 -0.56 -0.43 16 5 C 0.58 9.54 7.80 -12.48 -0.10 9.45 16 6 O -0.51 -10.20 15.16 -15.20 -0.23 -10.43 16 7 N -0.70 -10.29 4.97 -53.77 -0.27 -10.55 16 8 C 0.15 2.26 2.82 -66.82 -0.19 2.08 16 9 H 0.10 1.65 7.26 -51.93 -0.38 1.27 16 10 C -0.13 -1.76 6.59 -25.61 -0.17 -1.93 16 11 C -0.12 -1.57 6.83 -24.99 -0.17 -1.74 16 12 C -0.11 -1.71 6.11 -24.66 -0.15 -1.86 16 13 C -0.10 -1.71 2.60 -88.96 -0.23 -1.94 16 14 H 0.08 1.30 7.74 -51.93 -0.40 0.90 16 15 C 0.17 3.56 5.54 -4.04 -0.02 3.54 16 16 N -0.74 -19.19 5.46 -59.91 -0.33 -19.52 16 17 C -0.33 -9.58 9.99 -15.06 -0.15 -9.73 16 18 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 20 N -0.95 -29.67 13.70 55.49 0.76 -28.91 16 21 Si 1.08 26.60 29.92 -169.99 -5.09 21.51 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.50 6.60 7.93 -12.69 -0.10 6.50 16 26 O -0.48 -8.35 16.40 -15.43 -0.25 -8.61 16 27 N -0.59 -4.51 5.29 -9.45 -0.05 -4.56 16 28 H 0.42 1.96 8.64 -40.82 -0.35 1.60 16 29 C 0.15 0.88 6.78 -81.98 -0.56 0.33 16 30 C -0.13 -0.13 8.83 36.01 0.32 0.19 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.15 6.42 -51.93 -0.33 -0.19 16 34 H 0.41 5.39 7.72 -40.82 -0.32 5.08 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.85 7.92 -51.93 -0.41 0.44 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.18 8.00 -51.92 -0.42 0.76 16 41 H 0.02 0.49 8.06 -51.93 -0.42 0.07 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.37 9.54 6.41 -40.82 -0.26 9.28 16 44 H 0.25 7.81 6.77 -40.82 -0.28 7.53 16 45 H 0.08 -0.03 7.90 -51.93 -0.41 -0.44 16 46 H 0.10 0.01 8.09 -51.93 -0.42 -0.41 16 47 H 0.10 -0.03 7.36 -51.93 -0.38 -0.42 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -39.24 385.54 -9.02 -48.25 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.94 Total: 8.95 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.38 Total: 2.10 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: 0.07 Total: -67.58 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.48 Total: -19.04 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -5.09 Total: 21.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.24 -9.02 -48.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272279486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.778 kcal (2) G-P(sol) polarization free energy of solvation -39.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds