Wall clock time and date at job start Tue Mar 31 2020 17:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32175 * 119.14150 * 2 1 4 4 C 1.32358 * 120.60248 * 180.30948 * 3 2 1 5 5 C 1.47501 * 120.50874 * 179.69922 * 4 3 2 6 6 O 1.21603 * 120.00379 * 179.72313 * 5 4 3 7 7 N 1.34780 * 120.00056 * 359.71988 * 5 4 3 8 8 C 1.46495 * 120.00168 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.05610 * 326.41614 * 8 7 5 10 10 C 1.53870 * 110.03350 * 87.83422 * 8 7 5 11 11 C 1.54269 * 106.59902 * 119.28699 * 10 8 7 12 12 C 1.55031 * 104.28113 * 23.51530 * 11 10 8 13 13 C 1.54267 * 110.03163 * 205.00219 * 8 7 5 14 14 H 1.08999 * 110.48845 * 335.91349 * 13 8 7 15 15 C 1.53004 * 110.48676 * 98.42797 * 13 8 7 16 16 N 1.46504 * 109.46932 * 183.16084 * 15 13 8 17 17 C 1.36934 * 119.99567 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00537 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99798 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 299.99987 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00079 * 21 19 17 25 25 C 1.46679 * 118.98317 * 359.42312 * 4 3 2 26 26 O 1.21856 * 120.78514 * 180.29890 * 25 4 3 27 27 N 1.35146 * 118.43050 * 0.27596 * 25 4 3 28 28 H 0.97008 * 120.37128 * 179.97438 * 27 25 4 29 29 C 1.34898 * 119.26414 * 359.97438 * 27 25 4 30 30 C 1.50702 * 119.50128 * 179.97438 * 29 27 25 31 31 H 1.09004 * 109.46603 * 270.29685 * 1 2 3 32 32 H 1.09001 * 109.47078 * 30.29650 * 1 2 3 33 33 H 1.08993 * 109.46916 * 150.29606 * 1 2 3 34 34 H 0.96999 * 119.99977 * 0.02562 * 7 5 4 35 35 H 1.09003 * 110.03137 * 238.57026 * 10 8 7 36 36 H 1.09001 * 110.03262 * 359.95249 * 10 8 7 37 37 H 1.09003 * 110.48493 * 142.29131 * 11 10 8 38 38 H 1.08998 * 110.48349 * 264.93048 * 11 10 8 39 39 H 1.08997 * 110.87628 * 203.90258 * 12 11 10 40 40 H 1.09007 * 110.69387 * 80.48813 * 12 11 10 41 41 H 1.08998 * 109.47524 * 63.15728 * 15 13 8 42 42 H 1.08997 * 109.47093 * 303.15629 * 15 13 8 43 43 H 0.97000 * 119.99825 * 359.97438 * 16 15 13 44 44 H 0.97005 * 119.99717 * 0.02562 * 20 19 17 45 45 H 1.09004 * 109.47050 * 0.02562 * 30 29 27 46 46 H 1.09002 * 109.47099 * 120.00182 * 30 29 27 47 47 H 1.08992 * 109.47583 * 240.00345 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4738 1.1882 -0.0062 5 6 4.1900 2.4777 -0.0128 6 8 5.4058 2.4980 -0.0133 7 7 3.4967 3.6335 -0.0184 8 6 4.2080 4.9142 -0.0255 9 1 5.1356 4.8298 0.5406 10 6 4.5106 5.3410 -1.4726 11 6 3.7927 6.6883 -1.6940 12 6 3.6297 7.2737 -0.2678 13 6 3.3166 6.0171 0.5819 14 1 2.2639 5.7490 0.4928 15 6 3.6848 6.2564 2.0476 16 7 2.7769 7.2520 2.6228 17 6 2.9148 7.6287 3.9320 18 1 3.6925 7.1916 4.5408 19 6 2.0550 8.5725 4.4769 20 7 1.1075 9.1056 3.7350 21 14 2.2426 9.0859 6.2632 22 1 1.2101 10.0993 6.5980 23 1 2.0744 7.8990 7.1396 24 1 3.5927 9.6680 6.4717 25 6 4.2171 -0.0763 -0.0001 26 8 5.4356 -0.0835 0.0000 27 7 3.5185 -1.2332 0.0059 28 1 3.9815 -2.0857 0.0097 29 6 2.1703 -1.1894 0.0066 30 6 1.3860 -2.4763 0.0127 31 1 -0.3633 0.0053 1.0277 32 1 -0.3633 0.8873 -0.5184 33 1 -0.3633 -0.8926 -0.5092 34 1 2.5269 3.6174 -0.0176 35 1 5.5852 5.4637 -1.6087 36 1 4.1291 4.5948 -2.1695 37 1 4.4024 7.3486 -2.3108 38 1 2.8168 6.5296 -2.1528 39 1 2.8014 7.9813 -0.2306 40 1 4.5557 7.7435 0.0640 41 1 4.7102 6.6208 2.1099 42 1 3.5970 5.3218 2.6015 43 1 2.0782 7.6444 2.0762 44 1 1.0098 8.8387 2.8075 45 1 2.0745 -3.3214 0.0164 46 1 0.7587 -2.5153 0.9033 47 1 0.7576 -2.5231 -0.8766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272279486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:59 Heat of formation + Delta-G solvation = -60.517469 kcal Electronic energy + Delta-G solvation = -28792.591936 eV Core-core repulsion = 24781.232629 eV Total energy + Delta-G solvation = -4011.359306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.92457 -41.02020 -39.36126 -39.01280 -36.67759 -36.62302 -34.76984 -34.02293 -33.31438 -30.31845 -30.02231 -28.88476 -27.64132 -26.10494 -25.64015 -24.62359 -23.91879 -22.27228 -21.38323 -21.06660 -19.88522 -19.62173 -19.26260 -17.99434 -17.65256 -17.38613 -17.11956 -16.77887 -16.01601 -15.88786 -15.69289 -15.36548 -15.09112 -15.06847 -15.03603 -14.94128 -14.54813 -14.11400 -13.89355 -13.85164 -13.62657 -12.98518 -12.86323 -12.81970 -12.73890 -12.65816 -12.55597 -12.43962 -12.36887 -12.06966 -11.89849 -11.82326 -11.76130 -11.51683 -11.41474 -11.25126 -10.94612 -10.58478 -10.16378 -9.13201 -9.12691 -8.41962 -5.35185 -1.00941 0.46236 1.20798 1.48335 1.57280 1.67285 1.84399 2.07830 2.50117 2.69335 2.87841 2.96676 3.33734 3.37592 3.38056 3.58252 3.70630 3.81444 3.86456 3.99428 4.29135 4.37574 4.44285 4.48468 4.52413 4.54598 4.61692 4.65404 4.68491 4.86821 4.88924 4.92251 4.92473 5.01310 5.05621 5.10511 5.17090 5.18283 5.22488 5.23247 5.41007 5.47399 5.52264 5.55808 6.26786 6.48588 6.49486 6.58541 7.07996 7.12102 7.97706 8.10241 9.10460 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.002796 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.396402 B =10013.029838 C =11100.950335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.051 4.051 3 N -0.342 5.342 4 C -0.066 4.066 5 C 0.578 3.422 6 O -0.562 6.562 7 N -0.694 5.694 8 C 0.152 3.848 9 H 0.068 0.932 10 C -0.124 4.124 11 C -0.108 4.108 12 C -0.109 4.109 13 C -0.090 4.090 14 H 0.085 0.915 15 C 0.169 3.831 16 N -0.749 5.749 17 C -0.341 4.341 18 H 0.058 0.942 19 C -0.099 4.099 20 N -0.970 5.970 21 Si 1.128 2.872 22 H -0.287 1.287 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.491 3.509 26 O -0.540 6.540 27 N -0.563 5.563 28 H 0.439 0.561 29 C 0.203 3.797 30 C -0.131 4.131 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.414 0.586 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.013 0.987 42 H 0.004 0.996 43 H 0.365 0.635 44 H 0.246 0.754 45 H 0.102 0.898 46 H 0.127 0.873 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 -27.753 -14.393 31.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.181 4.181 3 N -0.060 5.060 4 C -0.226 4.226 5 C 0.364 3.636 6 O -0.439 6.439 7 N -0.346 5.346 8 C 0.047 3.953 9 H 0.087 0.913 10 C -0.162 4.162 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.109 4.109 14 H 0.103 0.897 15 C 0.042 3.958 16 N -0.394 5.394 17 C -0.472 4.472 18 H 0.076 0.924 19 C -0.291 4.291 20 N -0.618 5.618 21 Si 0.952 3.048 22 H -0.213 1.213 23 H -0.205 1.205 24 H -0.206 1.206 25 C 0.285 3.715 26 O -0.417 6.417 27 N -0.198 5.198 28 H 0.283 0.717 29 C 0.084 3.916 30 C -0.188 4.188 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.133 0.867 34 H 0.252 0.748 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.031 0.969 42 H 0.022 0.978 43 H 0.198 0.802 44 H 0.056 0.944 45 H 0.121 0.879 46 H 0.145 0.855 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.534 -26.057 -13.061 29.498 hybrid contribution 1.117 -1.639 -1.067 2.252 sum -3.418 -27.696 -14.128 31.279 Atomic orbital electron populations 1.20712 0.83969 1.05308 1.04217 1.20960 0.99755 0.85266 1.12164 1.67420 1.07389 1.31975 0.99197 1.23162 0.89589 0.92894 1.17000 1.17461 0.86207 0.83397 0.76562 1.90831 1.14420 1.87399 1.51244 1.45835 1.10921 1.04243 1.73583 1.21576 0.95048 0.81373 0.97338 0.91343 1.22483 1.01259 0.98060 0.94448 1.22333 1.01268 0.95207 0.95781 1.22433 1.01489 0.95779 0.95043 1.22278 0.99704 0.95431 0.93518 0.89703 1.20666 0.92449 0.90497 0.92166 1.42438 1.37722 1.49136 1.10069 1.20364 1.15303 1.22071 0.89449 0.92375 1.27209 0.95036 0.96839 1.09975 1.70987 1.35354 1.46959 1.08488 0.82636 0.75982 0.76166 0.70014 1.21305 1.20523 1.20606 1.19046 0.87863 0.85121 0.79439 1.91020 1.13537 1.86164 1.51000 1.43740 1.07345 1.11505 1.57231 0.71731 1.22528 0.82522 1.01003 0.85594 1.21614 1.00919 0.88507 1.07741 0.89875 0.91094 0.86717 0.74834 0.91189 0.90872 0.89837 0.90166 0.91616 0.92179 0.96894 0.97824 0.80248 0.94381 0.87946 0.85491 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 9.66 71.24 0.69 0.20 16 2 C -0.05 -0.67 6.70 42.03 0.28 -0.39 16 3 N -0.34 -7.78 9.57 -169.24 -1.62 -9.40 16 4 C -0.07 -1.94 6.96 43.71 0.30 -1.63 16 5 C 0.58 20.75 7.80 86.68 0.68 21.43 16 6 O -0.56 -24.84 15.16 15.54 0.24 -24.61 16 7 N -0.69 -21.82 4.97 -442.29 -2.20 -24.02 16 8 C 0.15 4.95 2.82 45.72 0.13 5.08 16 9 H 0.07 2.61 7.26 -2.39 -0.02 2.59 16 10 C -0.12 -3.37 6.59 31.32 0.21 -3.16 16 11 C -0.11 -2.62 6.83 31.72 0.22 -2.41 16 12 C -0.11 -3.44 6.11 31.94 0.20 -3.24 16 13 C -0.09 -3.11 2.60 -9.72 -0.03 -3.14 16 14 H 0.08 2.85 7.74 -2.39 -0.02 2.83 16 15 C 0.17 7.60 5.54 86.38 0.48 8.08 16 16 N -0.75 -40.02 5.46 -343.44 -1.88 -41.90 16 17 C -0.34 -20.31 9.99 84.03 0.84 -19.48 16 18 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 19 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 20 N -0.97 -61.57 13.70 21.65 0.30 -61.28 16 21 Si 1.13 53.60 29.92 68.60 2.05 55.66 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 C 0.49 13.63 7.93 86.39 0.68 14.31 16 26 O -0.54 -20.22 16.40 14.73 0.24 -19.98 16 27 N -0.56 -7.59 5.29 -301.77 -1.60 -9.19 16 28 H 0.44 2.93 8.64 -92.70 -0.80 2.13 16 29 C 0.20 1.54 6.78 41.61 0.28 1.82 16 30 C -0.13 0.61 8.83 71.24 0.63 1.24 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 -0.27 6.42 -2.39 -0.02 -0.28 16 34 H 0.41 11.55 7.72 -92.71 -0.72 10.83 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 1.90 7.92 -2.39 -0.02 1.88 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 2.02 8.00 -2.38 -0.02 2.00 16 41 H 0.01 0.61 8.06 -2.39 -0.02 0.59 16 42 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.36 19.58 6.41 -92.71 -0.59 18.99 16 44 H 0.25 15.44 6.77 -92.70 -0.63 14.81 16 45 H 0.10 -0.78 7.90 -2.39 -0.02 -0.80 16 46 H 0.13 -0.90 8.09 -2.39 -0.02 -0.92 16 47 H 0.13 -1.12 7.36 -2.39 -0.02 -1.14 16 Total: -1.00 -92.98 385.54 0.65 -92.34 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.94 Total: 29.13 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.05 Total: 13.24 kcal Atomic # 7 Polarization: -138.78 SS G_CDS: -7.00 Total: -145.78 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: 0.48 Total: -44.58 kcal Atomic # 14 Polarization: 53.60 SS G_CDS: 2.05 Total: 55.66 kcal Total: -92.98 0.65 -92.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272279486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.820 kcal (2) G-P(sol) polarization free energy of solvation -92.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds