Wall clock time and date at job start Tue Mar 31 2020 17:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32170 * 119.14649 * 2 1 4 4 C 1.32353 * 120.60795 * 179.97438 * 3 2 1 5 5 C 1.47499 * 120.51065 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00189 * 180.02562 * 5 4 3 7 7 N 1.34781 * 120.00093 * 359.97438 * 5 4 3 8 8 C 1.46494 * 120.00253 * 179.97438 * 7 5 4 9 9 H 1.09001 * 110.02018 * 326.40060 * 8 7 5 10 10 C 1.54267 * 110.03004 * 87.83796 * 8 7 5 11 11 C 1.54891 * 104.19663 * 142.89363 * 10 8 7 12 12 C 1.54962 * 102.77626 * 322.08260 * 11 10 8 13 13 C 1.53876 * 110.03516 * 205.00348 * 8 7 5 14 14 H 1.08995 * 110.03566 * 121.38637 * 13 8 7 15 15 C 1.53000 * 110.02883 * 0.02562 * 13 8 7 16 16 N 1.46499 * 109.46840 * 175.68831 * 15 13 8 17 17 C 1.36936 * 120.00002 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00140 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00562 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99699 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00457 * 21 19 17 23 23 H 1.48504 * 109.47189 * 210.00360 * 21 19 17 24 24 H 1.48500 * 109.47392 * 329.99935 * 21 19 17 25 25 C 1.46680 * 118.98462 * 0.25441 * 4 3 2 26 26 O 1.21855 * 120.78571 * 179.72699 * 25 4 3 27 27 N 1.35155 * 118.42420 * 359.46375 * 25 4 3 28 28 H 0.97007 * 120.36386 * 180.23757 * 27 25 4 29 29 C 1.34891 * 119.26692 * 0.55880 * 27 25 4 30 30 C 1.50703 * 119.49955 * 179.70785 * 29 27 25 31 31 H 1.08997 * 109.47187 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47266 * 119.99723 * 1 2 3 33 33 H 1.09005 * 109.46838 * 239.99798 * 1 2 3 34 34 H 0.97001 * 119.99586 * 0.02562 * 7 5 4 35 35 H 1.09004 * 110.48934 * 261.57426 * 10 8 7 36 36 H 1.09002 * 110.48876 * 24.21569 * 10 8 7 37 37 H 1.08996 * 110.75578 * 80.37271 * 11 10 8 38 38 H 1.09006 * 110.75425 * 203.55989 * 11 10 8 39 39 H 1.09001 * 110.47915 * 279.23133 * 12 11 10 40 40 H 1.09005 * 110.52587 * 156.56464 * 12 11 10 41 41 H 1.09002 * 109.47398 * 295.69157 * 15 13 8 42 42 H 1.09001 * 109.47194 * 55.69338 * 15 13 8 43 43 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 44 44 H 0.96993 * 120.00222 * 179.97438 * 20 19 17 45 45 H 1.09007 * 109.46875 * 269.97510 * 30 29 27 46 46 H 1.08996 * 109.47463 * 29.97027 * 30 29 27 47 47 H 1.08994 * 109.47296 * 149.97871 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4738 1.1881 0.0005 5 6 4.1900 2.4775 -0.0001 6 8 5.4058 2.4978 -0.0001 7 7 3.4968 3.6334 -0.0016 8 6 4.2081 4.9141 -0.0016 9 1 5.1344 4.8265 0.5663 10 6 4.5142 5.3485 -1.4499 11 6 4.3304 6.8864 -1.4320 12 6 3.1140 7.0753 -0.4908 13 6 3.3180 6.0115 0.6076 14 1 3.8122 6.4565 1.4712 15 6 1.9690 5.4213 1.0233 16 7 1.1714 6.4509 1.6941 17 6 -0.0819 6.1521 2.1578 18 1 -0.4823 5.1573 2.0294 19 6 -0.8378 7.1278 2.7930 20 7 -2.0423 6.8405 3.2392 21 14 -0.1450 8.8483 3.0159 22 1 -0.5073 9.6835 1.8428 23 1 -0.7106 9.4538 4.2483 24 1 1.3334 8.7751 3.1339 25 6 4.2171 -0.0764 -0.0046 26 8 5.4356 -0.0836 -0.0093 27 7 3.5184 -1.2334 0.0014 28 1 3.9814 -2.0858 0.0017 29 6 2.1702 -1.1896 0.0004 30 6 1.3859 -2.4764 0.0005 31 1 -0.3633 1.0276 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 -0.3633 -0.5139 0.8900 34 1 2.5270 3.6173 -0.0020 35 1 5.5387 5.0898 -1.7174 36 1 3.8101 4.8883 -2.1431 37 1 5.2141 7.3763 -1.0232 38 1 4.1108 7.2608 -2.4319 39 1 2.1836 6.8945 -1.0291 40 1 3.1173 8.0758 -0.0581 41 1 1.4382 5.0695 0.1386 42 1 2.1321 4.5866 1.7050 43 1 1.5311 7.3443 1.8099 44 1 -2.5704 7.5222 3.6834 45 1 1.1972 -2.7869 -1.0273 46 1 1.9566 -3.2498 0.5146 47 1 0.4367 -2.3234 0.5138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272279493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:07 Heat of formation + Delta-G solvation = -18.808091 kcal Electronic energy + Delta-G solvation = -29308.512710 eV Core-core repulsion = 25298.962058 eV Total energy + Delta-G solvation = -4009.550652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.98925 -39.87920 -38.26041 -37.78622 -35.68956 -34.47920 -33.63549 -33.13816 -31.50969 -29.64340 -28.95132 -27.83659 -26.61484 -24.91190 -24.65564 -23.36049 -22.10030 -21.01096 -20.47503 -19.23781 -18.87939 -18.64040 -17.57515 -17.01821 -16.49402 -16.11287 -15.84231 -15.12751 -14.79373 -14.55689 -14.39145 -14.31612 -14.19204 -13.82748 -13.67275 -13.51560 -13.35333 -13.29953 -13.06772 -12.64195 -12.23170 -12.21290 -12.07416 -11.79356 -11.60657 -11.49629 -11.44633 -10.93055 -10.89113 -10.84472 -10.46508 -10.44644 -10.32769 -10.18848 -9.98735 -9.56525 -9.49131 -8.92388 -8.79574 -8.24812 -7.20339 -5.74662 -3.09504 -0.11629 1.42606 2.10082 2.60330 3.18973 3.39633 3.42702 3.47366 3.57878 3.65387 3.98028 3.98526 4.34018 4.61424 4.64644 4.74558 4.81302 4.85985 4.96877 5.08351 5.17190 5.30558 5.38344 5.40591 5.53607 5.57518 5.62823 5.66758 5.73934 5.82884 5.83305 5.87718 5.95711 6.06687 6.07151 6.11297 6.17932 6.28559 6.39251 6.51778 6.63446 6.73807 6.78871 7.24136 7.49712 7.73479 8.01950 8.36332 8.44501 9.23930 9.96467 10.16696 11.43830 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.003588 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.727292 B = 7802.467173 C = 9874.257567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.023 4.023 3 N -0.344 5.344 4 C 0.005 3.995 5 C 0.580 3.420 6 O -0.515 6.515 7 N -0.703 5.703 8 C 0.150 3.850 9 H 0.092 0.908 10 C -0.132 4.132 11 C -0.123 4.123 12 C -0.115 4.115 13 C -0.112 4.112 14 H 0.082 0.918 15 C 0.161 3.839 16 N -0.752 5.752 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.935 5.935 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.277 1.277 25 C 0.497 3.503 26 O -0.486 6.486 27 N -0.586 5.586 28 H 0.420 0.580 29 C 0.152 3.848 30 C -0.131 4.131 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.416 0.584 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.031 0.969 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 -17.714 -10.592 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 N -0.061 5.061 4 C -0.163 4.163 5 C 0.364 3.636 6 O -0.389 6.389 7 N -0.358 5.358 8 C 0.045 3.955 9 H 0.110 0.890 10 C -0.171 4.171 11 C -0.161 4.161 12 C -0.153 4.153 13 C -0.132 4.132 14 H 0.100 0.900 15 C 0.034 3.966 16 N -0.398 5.398 17 C -0.371 4.371 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.583 5.583 21 Si 0.713 3.287 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C 0.289 3.711 26 O -0.358 6.358 27 N -0.222 5.222 28 H 0.260 0.740 29 C 0.037 3.963 30 C -0.189 4.189 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.256 0.744 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.610 -17.026 -10.524 21.789 hybrid contribution 0.446 0.010 0.340 0.560 sum 9.056 -17.016 -10.184 21.800 Atomic orbital electron populations 1.20585 0.86607 1.05222 1.02226 1.20206 0.98103 0.85394 1.11269 1.67592 1.08308 1.29711 1.00502 1.23902 0.88939 0.93907 1.09590 1.17062 0.86513 0.82325 0.77709 1.90860 1.12381 1.86659 1.48972 1.46180 1.11633 1.04475 1.73509 1.21666 0.95709 0.81580 0.96533 0.89006 1.22781 1.01871 0.96018 0.96436 1.22485 0.98545 0.95368 0.99731 1.22418 0.98370 0.98531 0.95980 1.22279 0.97063 0.95216 0.98605 0.89957 1.20672 0.88603 0.92147 0.95218 1.42679 1.16840 1.09658 1.70615 1.19064 0.89704 0.98368 1.29974 0.89165 1.24648 0.96175 0.97665 1.00634 1.69696 1.10444 1.33535 1.44660 0.86568 0.78444 0.86163 0.77504 1.21081 1.21821 1.20319 1.19072 0.88392 0.83956 0.79677 1.91048 1.11413 1.85313 1.48033 1.43727 1.06417 1.11948 1.60119 0.73965 1.21564 0.83438 0.99109 0.92231 1.21242 1.01103 0.91645 1.04867 0.89326 0.90821 0.90557 0.74397 0.91276 0.91132 0.91557 0.91541 0.90657 0.91576 0.95382 0.95130 0.80612 0.93135 0.88374 0.89969 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 8.82 36.00 0.32 -0.32 16 2 C -0.02 -0.22 6.70 -83.18 -0.56 -0.78 16 3 N -0.34 -4.51 9.55 -4.85 -0.05 -4.55 16 4 C 0.00 0.07 6.96 -80.46 -0.56 -0.49 16 5 C 0.58 9.80 7.80 -12.48 -0.10 9.71 16 6 O -0.52 -10.22 15.16 -15.19 -0.23 -10.45 16 7 N -0.70 -10.82 4.39 -53.77 -0.24 -11.05 16 8 C 0.15 2.22 3.23 -66.81 -0.22 2.00 16 9 H 0.09 1.42 7.56 -51.93 -0.39 1.03 16 10 C -0.13 -1.72 6.53 -25.07 -0.16 -1.89 16 11 C -0.12 -1.47 6.91 -24.70 -0.17 -1.64 16 12 C -0.12 -1.65 6.05 -25.03 -0.15 -1.80 16 13 C -0.11 -1.76 2.97 -89.50 -0.27 -2.03 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 15 C 0.16 3.07 4.18 -4.04 -0.02 3.05 16 16 N -0.75 -17.67 5.24 -59.91 -0.31 -17.98 16 17 C -0.24 -6.75 10.47 -15.06 -0.16 -6.91 16 18 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.94 -29.14 13.97 55.49 0.78 -28.37 16 21 Si 0.88 22.07 27.73 -169.99 -4.71 17.36 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 24 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 25 C 0.50 6.94 7.93 -12.68 -0.10 6.84 16 26 O -0.49 -8.58 16.40 -15.43 -0.25 -8.83 16 27 N -0.59 -4.99 5.29 -9.45 -0.05 -5.04 16 28 H 0.42 2.25 8.81 -40.82 -0.36 1.89 16 29 C 0.15 1.06 6.78 -81.98 -0.56 0.50 16 30 C -0.13 -0.29 9.59 36.01 0.35 0.05 16 31 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.08 0.42 7.36 -51.93 -0.38 0.04 16 34 H 0.42 6.36 5.25 -40.82 -0.21 6.15 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.15 7.77 -51.93 -0.40 0.74 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 42 H 0.03 0.62 7.46 -51.93 -0.39 0.23 16 43 H 0.36 8.32 5.39 -40.82 -0.22 8.10 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.10 0.09 8.14 -51.92 -0.42 -0.33 16 46 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 47 H 0.10 0.16 6.44 -51.93 -0.33 -0.18 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -37.61 379.63 -8.66 -46.28 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.87 Total: 10.60 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -2.45 Total: 6.33 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: 0.13 Total: -67.00 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.48 Total: -19.28 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.61 -8.66 -46.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272279493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.467 kcal (2) G-P(sol) polarization free energy of solvation -37.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds