Wall clock time and date at job start Tue Mar 31 2020 17:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32170 * 119.14649 * 2 1 4 4 C 1.32353 * 120.60795 * 179.97438 * 3 2 1 5 5 C 1.47499 * 120.51065 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00189 * 180.02562 * 5 4 3 7 7 N 1.34781 * 120.00093 * 359.97438 * 5 4 3 8 8 C 1.46494 * 120.00253 * 179.97438 * 7 5 4 9 9 H 1.09001 * 110.02018 * 326.40060 * 8 7 5 10 10 C 1.54267 * 110.03004 * 87.83796 * 8 7 5 11 11 C 1.54891 * 104.19663 * 142.89363 * 10 8 7 12 12 C 1.54962 * 102.77626 * 322.08260 * 11 10 8 13 13 C 1.53876 * 110.03516 * 205.00348 * 8 7 5 14 14 H 1.08995 * 110.03566 * 121.38637 * 13 8 7 15 15 C 1.53000 * 110.02883 * 0.02562 * 13 8 7 16 16 N 1.46499 * 109.46840 * 175.68831 * 15 13 8 17 17 C 1.36936 * 120.00002 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00140 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00562 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99699 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00457 * 21 19 17 23 23 H 1.48504 * 109.47189 * 210.00360 * 21 19 17 24 24 H 1.48500 * 109.47392 * 329.99935 * 21 19 17 25 25 C 1.46680 * 118.98462 * 0.25441 * 4 3 2 26 26 O 1.21855 * 120.78571 * 179.72699 * 25 4 3 27 27 N 1.35155 * 118.42420 * 359.46375 * 25 4 3 28 28 H 0.97007 * 120.36386 * 180.23757 * 27 25 4 29 29 C 1.34891 * 119.26692 * 0.55880 * 27 25 4 30 30 C 1.50703 * 119.49955 * 179.70785 * 29 27 25 31 31 H 1.08997 * 109.47187 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47266 * 119.99723 * 1 2 3 33 33 H 1.09005 * 109.46838 * 239.99798 * 1 2 3 34 34 H 0.97001 * 119.99586 * 0.02562 * 7 5 4 35 35 H 1.09004 * 110.48934 * 261.57426 * 10 8 7 36 36 H 1.09002 * 110.48876 * 24.21569 * 10 8 7 37 37 H 1.08996 * 110.75578 * 80.37271 * 11 10 8 38 38 H 1.09006 * 110.75425 * 203.55989 * 11 10 8 39 39 H 1.09001 * 110.47915 * 279.23133 * 12 11 10 40 40 H 1.09005 * 110.52587 * 156.56464 * 12 11 10 41 41 H 1.09002 * 109.47398 * 295.69157 * 15 13 8 42 42 H 1.09001 * 109.47194 * 55.69338 * 15 13 8 43 43 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 44 44 H 0.96993 * 120.00222 * 179.97438 * 20 19 17 45 45 H 1.09007 * 109.46875 * 269.97510 * 30 29 27 46 46 H 1.08996 * 109.47463 * 29.97027 * 30 29 27 47 47 H 1.08994 * 109.47296 * 149.97871 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4738 1.1881 0.0005 5 6 4.1900 2.4775 -0.0001 6 8 5.4058 2.4978 -0.0001 7 7 3.4968 3.6334 -0.0016 8 6 4.2081 4.9141 -0.0016 9 1 5.1344 4.8265 0.5663 10 6 4.5142 5.3485 -1.4499 11 6 4.3304 6.8864 -1.4320 12 6 3.1140 7.0753 -0.4908 13 6 3.3180 6.0115 0.6076 14 1 3.8122 6.4565 1.4712 15 6 1.9690 5.4213 1.0233 16 7 1.1714 6.4509 1.6941 17 6 -0.0819 6.1521 2.1578 18 1 -0.4823 5.1573 2.0294 19 6 -0.8378 7.1278 2.7930 20 7 -2.0423 6.8405 3.2392 21 14 -0.1450 8.8483 3.0159 22 1 -0.5073 9.6835 1.8428 23 1 -0.7106 9.4538 4.2483 24 1 1.3334 8.7751 3.1339 25 6 4.2171 -0.0764 -0.0046 26 8 5.4356 -0.0836 -0.0093 27 7 3.5184 -1.2334 0.0014 28 1 3.9814 -2.0858 0.0017 29 6 2.1702 -1.1896 0.0004 30 6 1.3859 -2.4764 0.0005 31 1 -0.3633 1.0276 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 -0.3633 -0.5139 0.8900 34 1 2.5270 3.6173 -0.0020 35 1 5.5387 5.0898 -1.7174 36 1 3.8101 4.8883 -2.1431 37 1 5.2141 7.3763 -1.0232 38 1 4.1108 7.2608 -2.4319 39 1 2.1836 6.8945 -1.0291 40 1 3.1173 8.0758 -0.0581 41 1 1.4382 5.0695 0.1386 42 1 2.1321 4.5866 1.7050 43 1 1.5311 7.3443 1.8099 44 1 -2.5704 7.5222 3.6834 45 1 1.1972 -2.7869 -1.0273 46 1 1.9566 -3.2498 0.5146 47 1 0.4367 -2.3234 0.5138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272279493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:06 Heat of formation + Delta-G solvation = -47.204798 kcal Electronic energy + Delta-G solvation = -29309.744084 eV Core-core repulsion = 25298.962058 eV Total energy + Delta-G solvation = -4010.782026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.90152 -41.10459 -39.35419 -38.97023 -36.61764 -36.34152 -34.72507 -33.99394 -33.54096 -30.58830 -30.21543 -28.82114 -27.57373 -26.33945 -25.61658 -24.33024 -23.94609 -22.09843 -21.57315 -20.62335 -19.95980 -19.71827 -19.30677 -18.10466 -17.39265 -17.20636 -17.06145 -16.51807 -16.29407 -15.91777 -15.58934 -15.48593 -15.10143 -15.03395 -14.94096 -14.65211 -14.50302 -14.09816 -13.87060 -13.79141 -13.58771 -13.48517 -12.93748 -12.83950 -12.78514 -12.76952 -12.42334 -12.37762 -12.32019 -12.07707 -11.94986 -11.80179 -11.73341 -11.58851 -11.46026 -11.37716 -10.94999 -10.54329 -10.09963 -9.27865 -9.10338 -7.99519 -5.32836 -0.98315 0.48478 1.23735 1.40481 1.43271 1.50342 1.51212 2.13421 2.51156 2.53376 2.91119 2.99130 3.31902 3.36248 3.40163 3.66287 3.73240 3.78545 3.91105 4.00734 4.35426 4.46107 4.48232 4.49954 4.56314 4.60891 4.64523 4.68838 4.76462 4.86607 4.90513 4.92042 4.99099 5.05999 5.07692 5.20052 5.21548 5.22744 5.23582 5.32326 5.49327 5.50647 5.53299 5.79149 6.23757 6.30635 6.50253 6.61616 7.10295 7.14328 7.85521 8.06326 9.21807 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.003588 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.727292 B = 7802.467173 C = 9874.257567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.050 4.050 3 N -0.348 5.348 4 C -0.065 4.065 5 C 0.578 3.422 6 O -0.558 6.558 7 N -0.701 5.701 8 C 0.150 3.850 9 H 0.082 0.918 10 C -0.127 4.127 11 C -0.110 4.110 12 C -0.114 4.114 13 C -0.104 4.104 14 H 0.083 0.917 15 C 0.164 3.836 16 N -0.752 5.752 17 C -0.233 4.233 18 H 0.059 0.941 19 C -0.060 4.060 20 N -0.982 5.982 21 Si 0.951 3.049 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.254 1.254 25 C 0.493 3.507 26 O -0.538 6.538 27 N -0.563 5.563 28 H 0.440 0.560 29 C 0.204 3.796 30 C -0.133 4.133 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.018 0.982 43 H 0.367 0.633 44 H 0.257 0.743 45 H 0.129 0.871 46 H 0.108 0.892 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.344 -19.132 -11.613 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.180 4.180 3 N -0.066 5.066 4 C -0.227 4.227 5 C 0.364 3.636 6 O -0.436 6.436 7 N -0.355 5.355 8 C 0.045 3.955 9 H 0.100 0.900 10 C -0.165 4.165 11 C -0.148 4.148 12 C -0.152 4.152 13 C -0.123 4.123 14 H 0.102 0.898 15 C 0.038 3.962 16 N -0.398 5.398 17 C -0.364 4.364 18 H 0.077 0.923 19 C -0.252 4.252 20 N -0.633 5.633 21 Si 0.778 3.222 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.178 1.178 25 C 0.288 3.712 26 O -0.415 6.415 27 N -0.198 5.198 28 H 0.283 0.717 29 C 0.084 3.916 30 C -0.190 4.190 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.254 0.746 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.036 0.964 43 H 0.200 0.800 44 H 0.066 0.934 45 H 0.147 0.853 46 H 0.127 0.873 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.287 -18.435 -11.571 23.290 hybrid contribution 0.306 0.066 0.648 0.720 sum 8.593 -18.369 -10.923 23.034 Atomic orbital electron populations 1.20706 0.84570 1.04279 1.04854 1.20879 0.99513 0.85427 1.12227 1.67486 1.07791 1.32056 0.99264 1.23301 0.89465 0.93317 1.16579 1.17414 0.86214 0.83342 0.76621 1.90804 1.14005 1.87406 1.51381 1.46161 1.11383 1.04621 1.73319 1.21699 0.94975 0.81139 0.97723 0.90021 1.22730 1.01845 0.97096 0.94871 1.22441 0.97905 0.94193 1.00237 1.22405 0.99056 0.98017 0.95742 1.22197 0.94854 0.95877 0.99393 0.89833 1.20726 0.90009 0.91006 0.94461 1.42647 1.15718 1.10783 1.70658 1.19040 0.91219 0.97024 1.29068 0.92330 1.25442 0.96566 1.02183 1.00995 1.69872 1.12176 1.34986 1.46239 0.85466 0.78936 0.80548 0.77223 1.20093 1.22428 1.17844 1.18983 0.87835 0.84984 0.79402 1.91005 1.13282 1.86149 1.51027 1.43651 1.07181 1.11554 1.57396 0.71655 1.22417 0.82625 1.00760 0.85756 1.21613 1.01220 0.88899 1.07248 0.92167 0.87657 0.88339 0.74598 0.91165 0.91296 0.90136 0.89666 0.91675 0.90952 0.95139 0.96432 0.79997 0.93384 0.85278 0.87326 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 8.82 71.24 0.63 -0.41 16 2 C -0.05 -0.89 6.70 42.03 0.28 -0.60 16 3 N -0.35 -9.44 9.55 -169.25 -1.62 -11.06 16 4 C -0.07 -2.07 6.96 43.71 0.30 -1.77 16 5 C 0.58 21.18 7.80 86.68 0.68 21.86 16 6 O -0.56 -24.03 15.16 15.56 0.24 -23.79 16 7 N -0.70 -23.05 4.39 -442.30 -1.94 -25.00 16 8 C 0.15 4.56 3.23 45.72 0.15 4.70 16 9 H 0.08 2.66 7.56 -2.39 -0.02 2.64 16 10 C -0.13 -3.28 6.53 31.67 0.21 -3.07 16 11 C -0.11 -2.41 6.91 31.91 0.22 -2.19 16 12 C -0.11 -3.11 6.05 31.70 0.19 -2.92 16 13 C -0.10 -3.25 2.97 -10.07 -0.03 -3.28 16 14 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 15 C 0.16 6.41 4.18 86.38 0.36 6.77 16 16 N -0.75 -35.34 5.24 -343.45 -1.80 -37.14 16 17 C -0.23 -13.29 10.47 84.03 0.88 -12.41 16 18 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 19 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 20 N -0.98 -62.59 13.97 21.65 0.30 -62.29 16 21 Si 0.95 45.39 27.73 68.60 1.90 47.29 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.25 -11.01 6.52 99.48 0.65 -10.37 16 25 C 0.49 14.28 7.93 86.39 0.68 14.97 16 26 O -0.54 -20.17 16.40 14.73 0.24 -19.93 16 27 N -0.56 -8.56 5.29 -301.75 -1.60 -10.16 16 28 H 0.44 3.49 8.81 -92.70 -0.82 2.67 16 29 C 0.20 2.16 6.78 41.61 0.28 2.44 16 30 C -0.13 0.20 9.59 71.24 0.68 0.88 16 31 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 32 H 0.10 0.58 8.09 -2.39 -0.02 0.56 16 33 H 0.10 0.73 7.36 -2.38 -0.02 0.72 16 34 H 0.41 13.59 5.25 -92.71 -0.49 13.10 16 35 H 0.07 1.81 8.14 -2.38 -0.02 1.80 16 36 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.06 1.91 7.77 -2.39 -0.02 1.89 16 40 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.03 1.19 7.08 -2.39 -0.02 1.18 16 42 H 0.02 0.74 7.46 -2.39 -0.02 0.72 16 43 H 0.37 16.39 5.39 -92.71 -0.50 15.89 16 44 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.13 -0.66 8.14 -2.38 -0.02 -0.68 16 46 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.12 -0.42 6.44 -2.39 -0.02 -0.43 16 Total: -1.00 -88.65 379.63 0.88 -87.77 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.83 Total: 32.40 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 5.99 Total: 21.89 kcal Atomic # 7 Polarization: -138.98 SS G_CDS: -6.65 Total: -145.64 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: 0.48 Total: -43.72 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Total: -88.65 0.88 -87.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272279493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.567 kcal (2) G-P(sol) polarization free energy of solvation -88.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds