Wall clock time and date at job start Tue Mar 31 2020 17:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32175 * 119.13580 * 2 1 4 4 C 1.32364 * 120.60037 * 180.02562 * 3 2 1 5 5 C 1.47506 * 120.50711 * 179.97438 * 4 3 2 6 6 O 1.21593 * 119.99965 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00142 * 359.97438 * 5 4 3 8 8 C 1.46498 * 120.00421 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.01691 * 34.93405 * 8 7 5 10 10 C 1.54266 * 110.03082 * 273.54443 * 8 7 5 11 11 C 1.54887 * 104.19888 * 217.10157 * 10 8 7 12 12 C 1.54893 * 102.74533 * 37.94403 * 11 10 8 13 13 C 1.53872 * 110.03563 * 156.37932 * 8 7 5 14 14 H 1.09002 * 110.03208 * 238.56530 * 13 8 7 15 15 C 1.52999 * 110.03132 * 359.97438 * 13 8 7 16 16 N 1.46504 * 109.46907 * 185.00374 * 15 13 8 17 17 C 1.36941 * 119.99874 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99722 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00005 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00028 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00213 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46603 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47196 * 120.00195 * 21 19 17 24 24 H 1.48503 * 109.47145 * 240.00310 * 21 19 17 25 25 C 1.46669 * 118.98635 * 0.24940 * 4 3 2 26 26 O 1.21858 * 120.79067 * 179.75060 * 25 4 3 27 27 N 1.35158 * 118.42974 * 359.44457 * 25 4 3 28 28 H 0.96995 * 120.37193 * 180.25608 * 27 25 4 29 29 C 1.34902 * 119.26002 * 0.57875 * 27 25 4 30 30 C 1.50697 * 119.49700 * 179.70213 * 29 27 25 31 31 H 1.08998 * 109.47338 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46545 * 120.00436 * 1 2 3 33 33 H 1.09007 * 109.46923 * 239.99800 * 1 2 3 34 34 H 0.97006 * 119.99798 * 359.97438 * 7 5 4 35 35 H 1.09001 * 110.48620 * 335.78364 * 10 8 7 36 36 H 1.09004 * 110.48798 * 98.42198 * 10 8 7 37 37 H 1.09001 * 110.75744 * 156.25305 * 11 10 8 38 38 H 1.09000 * 110.75698 * 279.63123 * 11 10 8 39 39 H 1.09002 * 110.48578 * 203.38190 * 12 11 10 40 40 H 1.08998 * 110.60430 * 80.79077 * 12 11 10 41 41 H 1.08998 * 109.47191 * 304.99951 * 15 13 8 42 42 H 1.08997 * 109.47216 * 65.00125 * 15 13 8 43 43 H 0.96997 * 120.00258 * 359.97438 * 16 15 13 44 44 H 0.97004 * 120.00376 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.46999 * 269.97459 * 30 29 27 46 46 H 1.08999 * 109.47572 * 29.97505 * 30 29 27 47 47 H 1.09005 * 109.47166 * 149.98096 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1505 1.1545 0.0000 4 6 3.4737 1.1883 -0.0005 5 6 4.1898 2.4779 -0.0011 6 8 5.4056 2.4982 -0.0011 7 7 3.4966 3.6337 -0.0016 8 6 4.2077 4.9145 -0.0027 9 1 5.1226 4.8328 -0.5895 10 6 4.5431 5.3340 1.4434 11 6 4.3591 6.8719 1.4453 12 6 3.1239 7.0694 0.5318 13 6 3.3054 6.0180 -0.5824 14 1 3.7824 6.4726 -1.4507 15 6 1.9482 5.4319 -0.9767 16 7 1.1435 6.4638 -1.6353 17 6 -0.1183 6.1691 -2.0783 18 1 -0.5200 5.1758 -1.9425 19 6 -0.8810 7.1469 -2.7019 20 7 -0.3913 8.3573 -2.8678 21 14 -2.6025 6.7451 -3.3056 22 1 -2.9155 5.3260 -2.9999 23 1 -3.5844 7.6261 -2.6237 24 1 -2.6763 6.9640 -4.7725 25 6 4.2171 -0.0760 -0.0067 26 8 5.4356 -0.0832 -0.0119 27 7 3.5186 -1.2331 -0.0001 28 1 3.9816 -2.0854 -0.0001 29 6 2.1703 -1.1894 0.0000 30 6 1.3862 -2.4763 0.0005 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3632 -0.5139 -0.8900 33 1 -0.3633 -0.5139 0.8900 34 1 2.5266 3.6175 -0.0020 35 1 3.8532 4.8664 2.1460 36 1 5.5728 5.0727 1.6874 37 1 4.1565 7.2355 2.4527 38 1 5.2344 7.3661 1.0237 39 1 3.1180 8.0747 0.1103 40 1 2.2037 6.8835 1.0855 41 1 2.0981 4.5965 -1.6606 42 1 1.4303 5.0820 -0.0837 43 1 1.5041 7.3560 -1.7569 44 1 -0.9241 9.0406 -3.3039 45 1 1.1967 -2.7867 -1.0271 46 1 1.9573 -3.2497 0.5142 47 1 0.4372 -2.3234 0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272279494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:11 Heat of formation + Delta-G solvation = -22.710647 kcal Electronic energy + Delta-G solvation = -29265.989407 eV Core-core repulsion = 25256.269527 eV Total energy + Delta-G solvation = -4009.719880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99736 -39.81341 -38.24763 -37.71663 -35.69368 -34.29554 -33.61868 -33.11524 -31.34447 -29.64910 -28.49762 -27.78678 -26.58421 -24.92912 -24.51299 -23.35405 -22.40240 -21.01920 -20.36235 -19.13606 -18.79205 -18.61156 -17.32377 -16.82071 -16.50324 -16.08160 -15.80184 -15.00893 -14.76126 -14.50462 -14.46911 -14.28265 -14.25691 -13.67392 -13.56021 -13.47896 -13.34507 -13.27995 -12.93971 -12.80617 -12.27510 -12.13530 -12.05281 -11.68704 -11.47020 -11.43810 -11.23773 -10.85456 -10.76532 -10.71434 -10.41042 -10.32569 -10.23548 -10.16818 -9.87550 -9.65043 -9.48169 -8.89166 -8.75046 -8.25703 -6.88292 -5.73402 -3.01562 -0.12467 1.41338 2.09386 2.61321 3.21475 3.44514 3.49441 3.52238 3.58661 3.63969 3.96322 3.98944 4.31888 4.59419 4.72511 4.77789 4.87954 4.92949 4.95601 5.13938 5.21214 5.27792 5.35506 5.55099 5.58383 5.59839 5.73065 5.76307 5.80711 5.86836 5.95166 6.03437 6.05651 6.08311 6.15282 6.28648 6.30517 6.40121 6.55313 6.67261 6.73200 6.83791 6.91923 7.23456 7.49233 7.73217 7.77739 8.39838 8.45529 9.56791 10.15103 10.50195 11.49646 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009251 B = 0.003779 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.879114 B = 7407.566323 C = 9950.801512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.025 4.025 3 N -0.346 5.346 4 C 0.007 3.993 5 C 0.579 3.421 6 O -0.515 6.515 7 N -0.701 5.701 8 C 0.149 3.851 9 H 0.090 0.910 10 C -0.132 4.132 11 C -0.124 4.124 12 C -0.111 4.111 13 C -0.108 4.108 14 H 0.083 0.917 15 C 0.157 3.843 16 N -0.729 5.729 17 C -0.236 4.236 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.497 3.503 26 O -0.485 6.485 27 N -0.587 5.587 28 H 0.420 0.580 29 C 0.151 3.849 30 C -0.131 4.131 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.415 0.585 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.023 0.977 42 H 0.020 0.980 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -20.896 9.521 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.151 4.151 3 N -0.063 5.063 4 C -0.161 4.161 5 C 0.362 3.638 6 O -0.389 6.389 7 N -0.356 5.356 8 C 0.044 3.956 9 H 0.108 0.892 10 C -0.171 4.171 11 C -0.162 4.162 12 C -0.149 4.149 13 C -0.127 4.127 14 H 0.101 0.899 15 C 0.029 3.971 16 N -0.373 5.373 17 C -0.367 4.367 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.220 1.220 25 C 0.289 3.711 26 O -0.357 6.357 27 N -0.222 5.222 28 H 0.260 0.740 29 C 0.036 3.964 30 C -0.188 4.188 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.256 0.744 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.037 0.963 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.117 0.883 46 H 0.100 0.900 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.975 -20.171 9.475 22.834 hybrid contribution -0.779 -1.129 -0.507 1.463 sum 4.196 -21.300 8.967 23.489 Atomic orbital electron populations 1.20576 0.86728 1.05082 1.02195 1.20185 0.98048 0.85445 1.11415 1.67602 1.08361 1.29638 1.00669 1.23949 0.88909 0.93971 1.09265 1.17069 0.86538 0.82324 0.77858 1.90861 1.12368 1.86644 1.49010 1.46205 1.11623 1.04515 1.73295 1.21706 0.95625 0.81602 0.96653 0.89178 1.22775 1.01657 0.96219 0.96423 1.22487 0.98665 0.95181 0.99856 1.22358 0.97751 0.98946 0.95829 1.22221 0.96787 0.94956 0.98725 0.89889 1.20690 0.88893 0.92536 0.94986 1.42334 1.14807 1.10326 1.69799 1.19275 0.90935 0.96191 1.30328 0.91133 1.24722 0.98603 0.95828 1.01870 1.69669 1.37157 1.02473 1.48895 0.86142 0.84686 0.77313 0.78208 1.20570 1.21940 1.21974 1.19079 0.88408 0.83950 0.79690 1.91052 1.11404 1.85296 1.47926 1.43728 1.06398 1.11950 1.60167 0.73969 1.21546 0.83467 0.99066 0.92332 1.21237 1.00979 0.91657 1.04958 0.89437 0.90690 0.90770 0.74445 0.91296 0.91387 0.91668 0.91542 0.91210 0.90976 0.95968 0.96259 0.78190 0.93627 0.88312 0.90001 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 8.82 36.01 0.32 -0.28 16 2 C -0.02 -0.23 6.70 -83.18 -0.56 -0.79 16 3 N -0.35 -4.51 9.55 -4.85 -0.05 -4.56 16 4 C 0.01 0.11 6.96 -80.46 -0.56 -0.45 16 5 C 0.58 9.96 7.79 -12.48 -0.10 9.86 16 6 O -0.52 -10.40 15.18 -15.19 -0.23 -10.63 16 7 N -0.70 -11.16 4.42 -53.77 -0.24 -11.39 16 8 C 0.15 2.32 3.21 -66.81 -0.21 2.10 16 9 H 0.09 1.47 7.61 -51.93 -0.39 1.07 16 10 C -0.13 -1.82 6.52 -25.07 -0.16 -1.99 16 11 C -0.12 -1.60 6.91 -24.74 -0.17 -1.77 16 12 C -0.11 -1.73 6.09 -25.07 -0.15 -1.88 16 13 C -0.11 -1.80 2.96 -89.50 -0.26 -2.07 16 14 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 15 C 0.16 3.13 4.18 -4.04 -0.02 3.12 16 16 N -0.73 -18.24 5.45 -59.91 -0.33 -18.56 16 17 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 C 0.50 6.95 7.93 -12.69 -0.10 6.85 16 26 O -0.49 -8.60 16.40 -15.43 -0.25 -8.85 16 27 N -0.59 -4.97 5.29 -9.46 -0.05 -5.02 16 28 H 0.42 2.23 8.81 -40.82 -0.36 1.87 16 29 C 0.15 1.03 6.78 -81.98 -0.56 0.48 16 30 C -0.13 -0.27 9.59 36.00 0.35 0.08 16 31 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.07 0.32 7.36 -51.93 -0.38 -0.06 16 34 H 0.42 6.55 5.20 -40.82 -0.21 6.34 16 35 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.20 7.76 -51.93 -0.40 0.80 16 41 H 0.02 0.47 7.40 -51.93 -0.38 0.08 16 42 H 0.02 0.39 7.12 -51.93 -0.37 0.02 16 43 H 0.38 10.14 7.55 -40.82 -0.31 9.83 16 44 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 46 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 47 H 0.10 0.11 6.44 -51.93 -0.33 -0.23 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -36.85 382.76 -9.02 -45.87 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -6.91 Total: 11.52 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.44 Total: 6.07 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: 0.06 Total: -66.91 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.48 Total: -19.48 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.85 -9.02 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272279494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.161 kcal (2) G-P(sol) polarization free energy of solvation -36.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds