Wall clock time and date at job start Tue Mar 31 2020 17:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32175 * 119.13580 * 2 1 4 4 C 1.32364 * 120.60037 * 180.02562 * 3 2 1 5 5 C 1.47506 * 120.50711 * 179.97438 * 4 3 2 6 6 O 1.21593 * 119.99965 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00142 * 359.97438 * 5 4 3 8 8 C 1.46498 * 120.00421 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.01691 * 34.93405 * 8 7 5 10 10 C 1.54266 * 110.03082 * 273.54443 * 8 7 5 11 11 C 1.54887 * 104.19888 * 217.10157 * 10 8 7 12 12 C 1.54893 * 102.74533 * 37.94403 * 11 10 8 13 13 C 1.53872 * 110.03563 * 156.37932 * 8 7 5 14 14 H 1.09002 * 110.03208 * 238.56530 * 13 8 7 15 15 C 1.52999 * 110.03132 * 359.97438 * 13 8 7 16 16 N 1.46504 * 109.46907 * 185.00374 * 15 13 8 17 17 C 1.36941 * 119.99874 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99722 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00005 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00028 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00213 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46603 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47196 * 120.00195 * 21 19 17 24 24 H 1.48503 * 109.47145 * 240.00310 * 21 19 17 25 25 C 1.46669 * 118.98635 * 0.24940 * 4 3 2 26 26 O 1.21858 * 120.79067 * 179.75060 * 25 4 3 27 27 N 1.35158 * 118.42974 * 359.44457 * 25 4 3 28 28 H 0.96995 * 120.37193 * 180.25608 * 27 25 4 29 29 C 1.34902 * 119.26002 * 0.57875 * 27 25 4 30 30 C 1.50697 * 119.49700 * 179.70213 * 29 27 25 31 31 H 1.08998 * 109.47338 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46545 * 120.00436 * 1 2 3 33 33 H 1.09007 * 109.46923 * 239.99800 * 1 2 3 34 34 H 0.97006 * 119.99798 * 359.97438 * 7 5 4 35 35 H 1.09001 * 110.48620 * 335.78364 * 10 8 7 36 36 H 1.09004 * 110.48798 * 98.42198 * 10 8 7 37 37 H 1.09001 * 110.75744 * 156.25305 * 11 10 8 38 38 H 1.09000 * 110.75698 * 279.63123 * 11 10 8 39 39 H 1.09002 * 110.48578 * 203.38190 * 12 11 10 40 40 H 1.08998 * 110.60430 * 80.79077 * 12 11 10 41 41 H 1.08998 * 109.47191 * 304.99951 * 15 13 8 42 42 H 1.08997 * 109.47216 * 65.00125 * 15 13 8 43 43 H 0.96997 * 120.00258 * 359.97438 * 16 15 13 44 44 H 0.97004 * 120.00376 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.46999 * 269.97459 * 30 29 27 46 46 H 1.08999 * 109.47572 * 29.97505 * 30 29 27 47 47 H 1.09005 * 109.47166 * 149.98096 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1505 1.1545 0.0000 4 6 3.4737 1.1883 -0.0005 5 6 4.1898 2.4779 -0.0011 6 8 5.4056 2.4982 -0.0011 7 7 3.4966 3.6337 -0.0016 8 6 4.2077 4.9145 -0.0027 9 1 5.1226 4.8328 -0.5895 10 6 4.5431 5.3340 1.4434 11 6 4.3591 6.8719 1.4453 12 6 3.1239 7.0694 0.5318 13 6 3.3054 6.0180 -0.5824 14 1 3.7824 6.4726 -1.4507 15 6 1.9482 5.4319 -0.9767 16 7 1.1435 6.4638 -1.6353 17 6 -0.1183 6.1691 -2.0783 18 1 -0.5200 5.1758 -1.9425 19 6 -0.8810 7.1469 -2.7019 20 7 -0.3913 8.3573 -2.8678 21 14 -2.6025 6.7451 -3.3056 22 1 -2.9155 5.3260 -2.9999 23 1 -3.5844 7.6261 -2.6237 24 1 -2.6763 6.9640 -4.7725 25 6 4.2171 -0.0760 -0.0067 26 8 5.4356 -0.0832 -0.0119 27 7 3.5186 -1.2331 -0.0001 28 1 3.9816 -2.0854 -0.0001 29 6 2.1703 -1.1894 0.0000 30 6 1.3862 -2.4763 0.0005 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3632 -0.5139 -0.8900 33 1 -0.3633 -0.5139 0.8900 34 1 2.5266 3.6175 -0.0020 35 1 3.8532 4.8664 2.1460 36 1 5.5728 5.0727 1.6874 37 1 4.1565 7.2355 2.4527 38 1 5.2344 7.3661 1.0237 39 1 3.1180 8.0747 0.1103 40 1 2.2037 6.8835 1.0855 41 1 2.0981 4.5965 -1.6606 42 1 1.4303 5.0820 -0.0837 43 1 1.5041 7.3560 -1.7569 44 1 -0.9241 9.0406 -3.3039 45 1 1.1967 -2.7867 -1.0271 46 1 1.9573 -3.2497 0.5142 47 1 0.4372 -2.3234 0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272279494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:10 Heat of formation + Delta-G solvation = -50.068249 kcal Electronic energy + Delta-G solvation = -29267.175721 eV Core-core repulsion = 25256.269527 eV Total energy + Delta-G solvation = -4010.906194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.89602 -41.08900 -39.33411 -38.94895 -36.60779 -36.19659 -34.72222 -33.98910 -33.27698 -30.31272 -30.09866 -28.81184 -27.56046 -26.32914 -25.61030 -24.34055 -24.19266 -22.11020 -21.55675 -20.39943 -19.94517 -19.60412 -19.05741 -18.05334 -17.38968 -17.19110 -17.07258 -16.49386 -16.30706 -15.84886 -15.64525 -15.23637 -15.07373 -15.03976 -14.94890 -14.74680 -14.40644 -14.08166 -13.84830 -13.79436 -13.47247 -13.10935 -12.89956 -12.80990 -12.76467 -12.75152 -12.40971 -12.38064 -12.30665 -12.09036 -11.92901 -11.76372 -11.72323 -11.54700 -11.45422 -11.36247 -10.91553 -10.53966 -10.08943 -9.10042 -8.96844 -7.90986 -5.19977 -0.98020 0.49169 1.23993 1.50066 1.51233 1.52128 1.61336 2.14150 2.53925 2.59164 2.92036 3.00041 3.40366 3.42135 3.47779 3.68233 3.73973 3.86399 3.92922 4.18617 4.39166 4.46816 4.50914 4.54050 4.57169 4.64433 4.67068 4.69692 4.76724 4.87792 4.92839 4.93056 5.00169 5.06475 5.08428 5.20793 5.22110 5.23744 5.27436 5.35770 5.49583 5.51213 5.52216 5.56472 6.29662 6.32400 6.51341 6.62456 7.15267 7.37389 8.11427 8.36740 9.32852 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009251 B = 0.003779 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.879114 B = 7407.566323 C = 9950.801512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.050 4.050 3 N -0.347 5.347 4 C -0.065 4.065 5 C 0.577 3.423 6 O -0.560 6.560 7 N -0.700 5.700 8 C 0.151 3.849 9 H 0.079 0.921 10 C -0.125 4.125 11 C -0.110 4.110 12 C -0.108 4.108 13 C -0.100 4.100 14 H 0.074 0.926 15 C 0.163 3.837 16 N -0.739 5.739 17 C -0.242 4.242 18 H 0.077 0.923 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.972 3.028 22 H -0.262 1.262 23 H -0.293 1.293 24 H -0.296 1.296 25 C 0.493 3.507 26 O -0.538 6.538 27 N -0.563 5.563 28 H 0.439 0.561 29 C 0.203 3.797 30 C -0.133 4.133 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.415 0.585 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.015 0.985 42 H 0.027 0.973 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.125 0.875 46 H 0.109 0.891 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 -24.396 10.358 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.180 4.180 3 N -0.065 5.065 4 C -0.226 4.226 5 C 0.363 3.637 6 O -0.437 6.437 7 N -0.354 5.354 8 C 0.046 3.954 9 H 0.097 0.903 10 C -0.164 4.164 11 C -0.148 4.148 12 C -0.145 4.145 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.036 3.964 16 N -0.382 5.382 17 C -0.373 4.373 18 H 0.095 0.905 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.220 1.220 24 H -0.224 1.224 25 C 0.288 3.712 26 O -0.415 6.415 27 N -0.198 5.198 28 H 0.283 0.717 29 C 0.084 3.916 30 C -0.190 4.190 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.032 0.968 42 H 0.044 0.956 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.143 0.857 46 H 0.127 0.873 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.678 -23.690 10.333 25.984 hybrid contribution -0.263 -0.357 -0.771 0.889 sum 2.415 -24.047 9.563 25.991 Atomic orbital electron populations 1.20717 0.84379 1.04408 1.04882 1.20917 0.99615 0.85353 1.12155 1.67494 1.07706 1.32040 0.99250 1.23261 0.89510 0.93185 1.16671 1.17446 0.86232 0.83360 0.76651 1.90805 1.14086 1.87420 1.51406 1.46153 1.11388 1.04531 1.73279 1.21668 0.94761 0.81234 0.97754 0.90301 1.22715 1.01799 0.96916 0.94924 1.22438 0.97643 0.94386 1.00334 1.22290 0.98663 0.97929 0.95668 1.22117 0.95046 0.95674 0.99075 0.90730 1.20730 0.89983 0.91249 0.94398 1.42513 1.14715 1.10836 1.70122 1.19678 0.91840 0.96369 1.29456 0.90496 1.25556 1.02627 0.95791 1.02752 1.69830 1.38611 1.03442 1.50211 0.85084 0.79831 0.77919 0.77016 1.18609 1.22025 1.22360 1.18983 0.87834 0.84995 0.79418 1.91009 1.13348 1.86145 1.51024 1.43661 1.07240 1.11517 1.57372 0.71682 1.22442 0.82591 1.00828 0.85753 1.21614 1.01328 0.88911 1.07115 0.91916 0.88328 0.87618 0.74540 0.91188 0.91093 0.89662 0.90306 0.91866 0.92076 0.96766 0.95579 0.79310 0.94096 0.85676 0.87250 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 8.82 71.24 0.63 -0.23 16 2 C -0.05 -0.82 6.70 42.03 0.28 -0.54 16 3 N -0.35 -9.10 9.55 -169.24 -1.62 -10.72 16 4 C -0.07 -2.05 6.96 43.71 0.30 -1.75 16 5 C 0.58 21.43 7.79 86.69 0.68 22.10 16 6 O -0.56 -24.51 15.18 15.57 0.24 -24.28 16 7 N -0.70 -23.68 4.42 -442.30 -1.95 -25.64 16 8 C 0.15 4.92 3.21 45.72 0.15 5.07 16 9 H 0.08 2.76 7.61 -2.39 -0.02 2.74 16 10 C -0.12 -3.49 6.52 31.67 0.21 -3.29 16 11 C -0.11 -2.77 6.91 31.89 0.22 -2.55 16 12 C -0.11 -3.40 6.09 31.67 0.19 -3.20 16 13 C -0.10 -3.47 2.96 -10.07 -0.03 -3.50 16 14 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 15 C 0.16 6.73 4.18 86.38 0.36 7.09 16 16 N -0.74 -37.92 5.45 -343.45 -1.87 -39.80 16 17 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 20 N -0.97 -59.52 13.06 21.65 0.28 -59.23 16 21 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 C 0.49 14.17 7.93 86.38 0.68 14.86 16 26 O -0.54 -20.23 16.40 14.72 0.24 -19.99 16 27 N -0.56 -8.28 5.29 -301.76 -1.60 -9.88 16 28 H 0.44 3.31 8.81 -92.71 -0.82 2.49 16 29 C 0.20 1.97 6.78 41.61 0.28 2.25 16 30 C -0.13 0.33 9.59 71.24 0.68 1.01 16 31 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.10 0.53 8.09 -2.38 -0.02 0.51 16 33 H 0.11 0.38 7.36 -2.38 -0.02 0.36 16 34 H 0.41 13.82 5.20 -92.70 -0.48 13.34 16 35 H 0.07 1.94 8.05 -2.39 -0.02 1.92 16 36 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.06 7.76 -2.39 -0.02 2.04 16 41 H 0.01 0.62 7.40 -2.39 -0.02 0.61 16 42 H 0.03 1.06 7.12 -2.39 -0.02 1.05 16 43 H 0.37 20.45 7.55 -92.71 -0.70 19.75 16 44 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 45 H 0.13 -0.64 8.14 -2.39 -0.02 -0.65 16 46 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 47 H 0.13 -0.67 6.44 -2.38 -0.02 -0.69 16 Total: -1.00 -86.48 382.76 0.72 -85.75 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.97 Total: 35.22 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 5.94 Total: 20.84 kcal Atomic # 7 Polarization: -138.51 SS G_CDS: -6.75 Total: -145.26 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: 0.48 Total: -44.27 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -86.48 0.72 -85.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272279494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.683 kcal (2) G-P(sol) polarization free energy of solvation -86.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds