Wall clock time and date at job start Tue Mar 31 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34489 * 126.83532 * 2 1 4 4 N 1.36443 * 108.85820 * 180.26113 * 3 2 1 5 5 H 0.97003 * 124.85247 * 179.97438 * 4 3 2 6 6 C 1.34662 * 110.29928 * 0.02562 * 4 3 2 7 7 C 1.36763 * 108.39590 * 359.97438 * 6 4 3 8 8 C 1.47264 * 126.94115 * 180.02562 * 7 6 4 9 9 O 1.21635 * 119.99891 * 204.49564 * 8 7 6 10 10 N 1.34769 * 120.00373 * 24.50208 * 8 7 6 11 11 C 1.47426 * 125.64685 * 5.15730 * 10 8 7 12 12 C 1.55124 * 104.72375 * 155.82183 * 11 10 8 13 13 H 1.09008 * 111.19537 * 279.20030 * 12 11 10 14 14 C 1.52993 * 110.94379 * 155.29404 * 12 11 10 15 15 C 1.55157 * 101.48666 * 37.30022 * 12 11 10 16 16 H 1.09003 * 110.72193 * 205.97328 * 15 12 11 17 17 N 1.46897 * 110.72366 * 82.69450 * 15 12 11 18 18 C 1.46897 * 111.00211 * 160.02540 * 17 15 12 19 19 C 1.50704 * 109.47027 * 180.02562 * 18 17 15 20 20 O 1.21290 * 119.99723 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99952 * 180.02562 * 19 18 17 22 22 C 1.37094 * 119.99887 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00228 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99995 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99748 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00023 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.46959 * 59.99669 * 26 24 22 28 28 H 1.48503 * 109.46914 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46920 * 299.99487 * 26 24 22 30 30 C 1.47025 * 125.65269 * 185.47783 * 10 8 7 31 31 H 1.08993 * 109.46796 * 269.68367 * 1 2 3 32 32 H 1.08997 * 109.46793 * 29.68343 * 1 2 3 33 33 H 1.09000 * 109.46689 * 149.68446 * 1 2 3 34 34 H 1.07998 * 125.57347 * 0.24448 * 3 2 1 35 35 H 1.08008 * 125.79943 * 179.97438 * 6 4 3 36 36 H 1.08997 * 110.37451 * 274.75450 * 11 10 8 37 37 H 1.09006 * 110.36396 * 37.07818 * 11 10 8 38 38 H 1.09001 * 109.47358 * 307.96058 * 14 12 11 39 39 H 1.09003 * 109.47528 * 67.95753 * 14 12 11 40 40 H 1.09004 * 109.47876 * 187.95840 * 14 12 11 41 41 H 1.00903 * 110.99629 * 283.98769 * 17 15 12 42 42 H 1.08993 * 109.47108 * 300.00052 * 18 17 15 43 43 H 1.09002 * 109.46806 * 60.00283 * 18 17 15 44 44 H 0.97001 * 120.00079 * 359.97438 * 21 19 18 45 45 H 0.97005 * 119.99989 * 180.02562 * 25 24 22 46 46 H 1.08999 * 109.87896 * 300.43320 * 30 10 8 47 47 H 1.08993 * 109.88562 * 61.59723 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0059 5 1 4.3840 1.2414 -0.0075 6 6 3.6656 -0.6902 -0.0103 7 6 2.3865 -1.1740 -0.0068 8 6 1.9750 -2.5880 -0.0091 9 8 0.8831 -2.9030 -0.4425 10 7 2.8083 -3.5331 0.4692 11 6 4.1079 -3.2837 1.1190 12 6 4.3524 -4.5337 2.0045 13 1 3.8045 -4.4642 2.9443 14 6 5.8469 -4.7402 2.2583 15 6 3.7791 -5.6636 1.1089 16 1 3.4515 -6.5078 1.7156 17 7 4.7707 -6.0911 0.1130 18 6 4.4509 -7.4266 -0.4086 19 6 5.4880 -7.8306 -1.4247 20 8 6.4037 -7.0800 -1.6879 21 7 5.3980 -9.0259 -2.0408 22 6 6.3418 -9.3936 -2.9647 23 1 7.1571 -8.7253 -3.1992 24 6 6.2487 -10.6257 -3.6003 25 7 5.2563 -11.4387 -3.3154 26 14 7.5342 -11.1265 -4.8598 27 1 8.8724 -11.1546 -4.2167 28 1 7.2106 -12.4763 -5.3875 29 1 7.5417 -10.1468 -5.9757 30 6 2.5749 -4.9840 0.4235 31 1 -0.3633 -0.0057 1.0276 32 1 -0.3633 0.8928 -0.5089 33 1 -0.3633 -0.8872 -0.5187 34 1 1.9869 2.1059 0.0037 35 1 4.5665 -1.2860 -0.0158 36 1 4.8941 -3.1866 0.3703 37 1 4.0575 -2.3863 1.7358 38 1 6.3807 -4.7375 1.3080 39 1 6.2232 -3.9343 2.8886 40 1 6.0018 -5.6957 2.7594 41 1 4.8445 -5.4185 -0.6355 42 1 4.4464 -8.1452 0.4108 43 1 3.4683 -7.4068 -0.8800 44 1 4.6659 -9.6263 -1.8300 45 1 5.1915 -12.2990 -3.7588 46 1 1.6573 -5.2288 0.9584 47 1 2.5024 -5.3154 -0.6123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274289134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:24 Heat of formation + Delta-G solvation = -19.967263 kcal Electronic energy + Delta-G solvation = -28643.505747 eV Core-core repulsion = 24633.904829 eV Total energy + Delta-G solvation = -4009.600917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46919 -39.98016 -38.31954 -37.61077 -34.51840 -33.76038 -32.65198 -32.37009 -31.20606 -30.60211 -28.53318 -26.83204 -26.37217 -26.19999 -24.17428 -23.40043 -21.59924 -20.48161 -19.64852 -19.30647 -18.92090 -18.08050 -17.88763 -16.75055 -16.29591 -15.89289 -15.47349 -15.13377 -14.67440 -14.51965 -14.39248 -14.09272 -13.91283 -13.81577 -13.57752 -13.35081 -13.25132 -12.90466 -12.87179 -12.65109 -12.44492 -12.21347 -12.19550 -11.88563 -11.72605 -11.57128 -11.52949 -11.27583 -11.01283 -10.79771 -10.67574 -10.43975 -10.20849 -9.85956 -9.49588 -8.89404 -8.64536 -8.51603 -8.46181 -8.07926 -7.95581 -6.40997 -3.81914 1.62446 2.17287 2.84424 3.06435 3.20496 3.26288 3.30447 3.39815 3.91237 4.04607 4.26032 4.36455 4.47798 4.62354 4.77693 4.87163 4.90018 5.13959 5.16371 5.17734 5.25499 5.29445 5.30746 5.36444 5.54349 5.60932 5.66726 5.67184 5.72326 5.75883 5.84594 5.88818 5.94760 6.06208 6.07907 6.13528 6.25534 6.28692 6.56640 6.58181 6.66727 7.16537 7.16982 7.51681 7.55451 7.58936 8.06324 8.27072 8.61532 9.18181 9.54818 10.05953 10.76618 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.002289 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.014754 B =12229.656257 C =12505.848370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.113 4.113 3 C -0.026 4.026 4 N -0.551 5.551 5 H 0.417 0.583 6 C 0.046 3.954 7 C -0.222 4.222 8 C 0.604 3.396 9 O -0.543 6.543 10 N -0.615 5.615 11 C 0.099 3.901 12 C -0.093 4.093 13 H 0.084 0.916 14 C -0.127 4.127 15 C 0.078 3.922 16 H 0.099 0.901 17 N -0.651 5.651 18 C 0.048 3.952 19 C 0.441 3.559 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 C 0.078 3.922 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.176 0.824 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.351 0.649 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.071 0.929 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 21.907 12.510 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.154 4.154 4 N -0.145 5.145 5 H 0.254 0.746 6 C -0.090 4.090 7 C -0.233 4.233 8 C 0.394 3.606 9 O -0.421 6.421 10 N -0.349 5.349 11 C -0.024 4.024 12 C -0.112 4.112 13 H 0.102 0.898 14 C -0.185 4.185 15 C -0.033 4.033 16 H 0.117 0.883 17 N -0.282 5.282 18 C -0.084 4.084 19 C 0.227 3.773 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.047 4.047 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.185 0.815 35 H 0.193 0.807 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.171 0.829 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.817 21.957 12.430 25.687 hybrid contribution -0.209 -0.298 -1.126 1.183 sum -5.026 21.658 11.304 24.943 Atomic orbital electron populations 1.20216 0.89454 1.02951 1.01761 1.20533 0.95557 0.90311 1.05509 1.21565 0.82488 0.99146 1.12188 1.41513 1.08287 1.06722 1.57995 0.74605 1.22218 0.98826 0.83715 1.04260 1.20260 0.92824 0.92474 1.17707 1.17088 0.83121 0.83559 0.76787 1.90752 1.21359 1.82308 1.47717 1.48278 1.20599 1.06301 1.59752 1.22672 0.85026 0.98995 0.95690 1.22430 0.98512 0.93081 0.97217 0.89766 1.21488 0.93245 1.00942 1.02778 1.22719 0.89054 0.97241 0.94334 0.88266 1.60140 1.46029 1.03593 1.18459 1.21731 0.96928 0.91639 0.98152 1.19771 0.88407 0.83762 0.85388 1.90514 1.36225 1.52925 1.67225 1.41856 1.26084 1.15357 1.36649 1.19638 1.05898 1.01423 1.15971 0.88003 1.25264 0.97893 0.95874 0.98902 1.69605 1.30927 1.10253 1.43471 0.85920 0.80427 0.77531 0.80350 1.19891 1.20979 1.19933 1.22804 0.99958 0.80295 1.01617 0.92064 0.92193 0.90153 0.81463 0.80741 0.90968 0.90530 0.90544 0.93747 0.92119 0.82899 0.89383 0.93709 0.77435 0.91805 0.91086 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.21 36.01 0.37 -0.52 16 2 C -0.11 -1.24 6.35 -102.54 -0.65 -1.89 16 3 C -0.03 -0.21 11.82 -16.83 -0.20 -0.40 16 4 N -0.55 -3.59 5.90 -12.85 -0.08 -3.67 16 5 H 0.42 1.24 8.96 -40.82 -0.37 0.88 16 6 C 0.05 0.40 10.10 -16.84 -0.17 0.23 16 7 C -0.22 -2.70 5.94 -103.35 -0.61 -3.31 16 8 C 0.60 8.86 7.78 -12.60 -0.10 8.77 16 9 O -0.54 -9.87 15.88 5.25 0.08 -9.78 16 10 N -0.62 -7.67 3.32 -171.70 -0.57 -8.25 16 11 C 0.10 0.95 4.57 -2.41 -0.01 0.93 16 12 C -0.09 -0.89 3.57 -88.36 -0.32 -1.20 16 13 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 14 C -0.13 -1.26 8.86 37.15 0.33 -0.93 16 15 C 0.08 0.90 3.02 -65.88 -0.20 0.70 16 16 H 0.10 1.05 7.90 -51.93 -0.41 0.64 16 17 N -0.65 -9.60 4.52 -106.05 -0.48 -10.08 16 18 C 0.05 0.81 5.99 -4.98 -0.03 0.78 16 19 C 0.44 10.20 7.82 -10.98 -0.09 10.11 16 20 O -0.58 -15.47 15.78 5.55 0.09 -15.38 16 21 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 22 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 23 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 26 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 C 0.08 0.98 6.32 -3.06 -0.02 0.96 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.03 6.78 -51.93 -0.35 0.68 16 34 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.18 1.20 5.91 -52.48 -0.31 0.89 16 36 H 0.07 0.68 7.18 -51.93 -0.37 0.30 16 37 H 0.08 0.62 6.91 -51.93 -0.36 0.26 16 38 H 0.08 0.92 7.36 -51.93 -0.38 0.54 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.35 5.64 8.12 -39.29 -0.32 5.32 16 42 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 43 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 44 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -34.94 385.16 -8.33 -43.27 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -6.89 Total: 13.86 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.94 Total: 6.24 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.46 Total: -60.10 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.17 Total: -25.16 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.94 -8.33 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274289134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.307 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds