Wall clock time and date at job start Tue Mar 31 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34489 * 126.83532 * 2 1 4 4 N 1.36443 * 108.85820 * 180.26113 * 3 2 1 5 5 H 0.97003 * 124.85247 * 179.97438 * 4 3 2 6 6 C 1.34662 * 110.29928 * 0.02562 * 4 3 2 7 7 C 1.36763 * 108.39590 * 359.97438 * 6 4 3 8 8 C 1.47264 * 126.94115 * 180.02562 * 7 6 4 9 9 O 1.21635 * 119.99891 * 204.49564 * 8 7 6 10 10 N 1.34769 * 120.00373 * 24.50208 * 8 7 6 11 11 C 1.47426 * 125.64685 * 5.15730 * 10 8 7 12 12 C 1.55124 * 104.72375 * 155.82183 * 11 10 8 13 13 H 1.09008 * 111.19537 * 279.20030 * 12 11 10 14 14 C 1.52993 * 110.94379 * 155.29404 * 12 11 10 15 15 C 1.55157 * 101.48666 * 37.30022 * 12 11 10 16 16 H 1.09003 * 110.72193 * 205.97328 * 15 12 11 17 17 N 1.46897 * 110.72366 * 82.69450 * 15 12 11 18 18 C 1.46897 * 111.00211 * 160.02540 * 17 15 12 19 19 C 1.50704 * 109.47027 * 180.02562 * 18 17 15 20 20 O 1.21290 * 119.99723 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99952 * 180.02562 * 19 18 17 22 22 C 1.37094 * 119.99887 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00228 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99995 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99748 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00023 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.46959 * 59.99669 * 26 24 22 28 28 H 1.48503 * 109.46914 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46920 * 299.99487 * 26 24 22 30 30 C 1.47025 * 125.65269 * 185.47783 * 10 8 7 31 31 H 1.08993 * 109.46796 * 269.68367 * 1 2 3 32 32 H 1.08997 * 109.46793 * 29.68343 * 1 2 3 33 33 H 1.09000 * 109.46689 * 149.68446 * 1 2 3 34 34 H 1.07998 * 125.57347 * 0.24448 * 3 2 1 35 35 H 1.08008 * 125.79943 * 179.97438 * 6 4 3 36 36 H 1.08997 * 110.37451 * 274.75450 * 11 10 8 37 37 H 1.09006 * 110.36396 * 37.07818 * 11 10 8 38 38 H 1.09001 * 109.47358 * 307.96058 * 14 12 11 39 39 H 1.09003 * 109.47528 * 67.95753 * 14 12 11 40 40 H 1.09004 * 109.47876 * 187.95840 * 14 12 11 41 41 H 1.00903 * 110.99629 * 283.98769 * 17 15 12 42 42 H 1.08993 * 109.47108 * 300.00052 * 18 17 15 43 43 H 1.09002 * 109.46806 * 60.00283 * 18 17 15 44 44 H 0.97001 * 120.00079 * 359.97438 * 21 19 18 45 45 H 0.97005 * 119.99989 * 180.02562 * 25 24 22 46 46 H 1.08999 * 109.87896 * 300.43320 * 30 10 8 47 47 H 1.08993 * 109.88562 * 61.59723 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0059 5 1 4.3840 1.2414 -0.0075 6 6 3.6656 -0.6902 -0.0103 7 6 2.3865 -1.1740 -0.0068 8 6 1.9750 -2.5880 -0.0091 9 8 0.8831 -2.9030 -0.4425 10 7 2.8083 -3.5331 0.4692 11 6 4.1079 -3.2837 1.1190 12 6 4.3524 -4.5337 2.0045 13 1 3.8045 -4.4642 2.9443 14 6 5.8469 -4.7402 2.2583 15 6 3.7791 -5.6636 1.1089 16 1 3.4515 -6.5078 1.7156 17 7 4.7707 -6.0911 0.1130 18 6 4.4509 -7.4266 -0.4086 19 6 5.4880 -7.8306 -1.4247 20 8 6.4037 -7.0800 -1.6879 21 7 5.3980 -9.0259 -2.0408 22 6 6.3418 -9.3936 -2.9647 23 1 7.1571 -8.7253 -3.1992 24 6 6.2487 -10.6257 -3.6003 25 7 5.2563 -11.4387 -3.3154 26 14 7.5342 -11.1265 -4.8598 27 1 8.8724 -11.1546 -4.2167 28 1 7.2106 -12.4763 -5.3875 29 1 7.5417 -10.1468 -5.9757 30 6 2.5749 -4.9840 0.4235 31 1 -0.3633 -0.0057 1.0276 32 1 -0.3633 0.8928 -0.5089 33 1 -0.3633 -0.8872 -0.5187 34 1 1.9869 2.1059 0.0037 35 1 4.5665 -1.2860 -0.0158 36 1 4.8941 -3.1866 0.3703 37 1 4.0575 -2.3863 1.7358 38 1 6.3807 -4.7375 1.3080 39 1 6.2232 -3.9343 2.8886 40 1 6.0018 -5.6957 2.7594 41 1 4.8445 -5.4185 -0.6355 42 1 4.4464 -8.1452 0.4108 43 1 3.4683 -7.4068 -0.8800 44 1 4.6659 -9.6263 -1.8300 45 1 5.1915 -12.2990 -3.7588 46 1 1.6573 -5.2288 0.9584 47 1 2.5024 -5.3154 -0.6123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274289134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:24 Heat of formation + Delta-G solvation = -46.032440 kcal Electronic energy + Delta-G solvation = -28644.636018 eV Core-core repulsion = 24633.904829 eV Total energy + Delta-G solvation = -4010.731188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19208 -40.95774 -40.02347 -38.83857 -36.11370 -35.38586 -33.43228 -33.35681 -33.16347 -31.47808 -29.59540 -27.77853 -27.57374 -27.18384 -25.80714 -24.43881 -22.45889 -21.30022 -21.06973 -20.53365 -19.92885 -19.70704 -18.79119 -17.79561 -17.70145 -17.08628 -16.84383 -16.46502 -16.12720 -15.81676 -15.56049 -15.27491 -15.11411 -14.89872 -14.75534 -14.25017 -14.12643 -14.02223 -13.83217 -13.66072 -13.54993 -13.47433 -13.26880 -13.20002 -13.10822 -12.84953 -12.79642 -12.42869 -12.34137 -12.20049 -12.12536 -11.65894 -11.53505 -11.49127 -10.95929 -10.32866 -10.00960 -9.81827 -9.50847 -9.31943 -9.18063 -8.45967 -5.94675 0.79353 1.39913 1.41488 1.48686 1.52523 1.96884 2.06737 2.28983 2.38289 2.50368 2.87463 3.21399 3.41182 3.50536 3.64283 3.96330 4.02521 4.06052 4.23026 4.24978 4.30439 4.37996 4.44414 4.50461 4.55896 4.61037 4.67157 4.69168 4.76951 4.83575 4.87660 4.91824 4.97914 5.11264 5.24961 5.30593 5.32554 5.34454 5.41103 5.73482 5.82036 5.88667 5.97055 6.08935 6.31821 6.54399 6.60480 6.69679 7.13021 7.22926 7.57284 8.12049 8.71246 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.002289 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.014754 B =12229.656257 C =12505.848370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.154 4.154 3 C -0.004 4.004 4 N -0.533 5.533 5 H 0.438 0.562 6 C 0.062 3.938 7 C -0.264 4.264 8 C 0.593 3.407 9 O -0.595 6.595 10 N -0.614 5.614 11 C 0.099 3.901 12 C -0.082 4.082 13 H 0.104 0.896 14 C -0.120 4.120 15 C 0.083 3.917 16 H 0.116 0.884 17 N -0.652 5.652 18 C 0.062 3.938 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.575 5.575 22 C -0.333 4.333 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.273 1.273 30 C 0.079 3.921 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.204 0.796 35 H 0.194 0.806 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.342 0.658 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.070 0.930 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 23.644 13.807 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.160 4.160 3 C -0.133 4.133 4 N -0.128 5.128 5 H 0.279 0.721 6 C -0.076 4.076 7 C -0.275 4.275 8 C 0.386 3.614 9 O -0.478 6.478 10 N -0.347 5.347 11 C -0.022 4.022 12 C -0.102 4.102 13 H 0.122 0.878 14 C -0.178 4.178 15 C -0.028 4.028 16 H 0.134 0.866 17 N -0.283 5.283 18 C -0.071 4.071 19 C 0.227 3.773 20 O -0.507 6.507 21 N -0.212 5.212 22 C -0.462 4.462 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.195 1.195 28 H -0.196 1.196 29 H -0.198 1.198 30 C -0.046 4.046 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.221 0.779 35 H 0.211 0.789 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.161 0.839 42 H 0.129 0.871 43 H 0.076 0.924 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.647 23.711 13.768 27.660 hybrid contribution -0.554 -0.748 -1.494 1.760 sum -4.201 22.963 12.274 26.374 Atomic orbital electron populations 1.20128 0.89900 1.02210 1.01649 1.20787 0.95970 0.91179 1.08060 1.22004 0.82243 0.99817 1.09186 1.41557 1.08881 1.06229 1.56138 0.72125 1.22371 0.98110 0.84724 1.02389 1.20286 0.94782 0.91415 1.20969 1.17640 0.82666 0.84964 0.76099 1.90709 1.23605 1.83265 1.50182 1.48356 1.21268 1.05857 1.59197 1.22832 0.83541 0.99969 0.95885 1.22435 0.98533 0.91768 0.97441 0.87797 1.21408 0.92964 1.01558 1.01867 1.22810 0.87921 0.98435 0.93631 0.86632 1.60189 1.47318 1.02373 1.18390 1.21601 0.95012 0.93317 0.97121 1.20828 0.88762 0.82470 0.85212 1.90483 1.38092 1.53713 1.68377 1.41943 1.25991 1.16320 1.36958 1.19623 1.06615 1.02048 1.17931 0.90226 1.26052 0.99745 0.95356 1.00274 1.69672 1.31921 1.10526 1.44113 0.84993 0.77991 0.77532 0.77858 1.19518 1.19606 1.19800 1.22746 1.00605 0.80937 1.00311 0.91882 0.90027 0.93715 0.77935 0.78905 0.90660 0.88388 0.92871 0.91370 0.92789 0.83917 0.87066 0.92387 0.77048 0.91345 0.91127 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 10.21 71.24 0.73 -0.99 16 2 C -0.15 -3.26 6.35 -18.51 -0.12 -3.38 16 3 C 0.00 -0.05 11.82 83.12 0.98 0.93 16 4 N -0.53 -5.14 5.90 -194.56 -1.15 -6.29 16 5 H 0.44 0.77 8.96 -92.71 -0.83 -0.06 16 6 C 0.06 0.95 10.10 83.91 0.85 1.80 16 7 C -0.26 -6.32 5.94 -19.04 -0.11 -6.43 16 8 C 0.59 18.04 7.78 86.62 0.67 18.72 16 9 O -0.60 -23.19 15.88 -4.14 -0.07 -23.26 16 10 N -0.61 -15.28 3.32 -815.40 -2.71 -17.99 16 11 C 0.10 1.72 4.57 86.93 0.40 2.12 16 12 C -0.08 -1.38 3.57 -9.33 -0.03 -1.41 16 13 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 14 C -0.12 -2.11 8.86 71.98 0.64 -1.47 16 15 C 0.08 1.79 3.02 46.11 0.14 1.93 16 16 H 0.12 2.17 7.90 -2.39 -0.02 2.15 16 17 N -0.65 -18.85 4.52 -489.45 -2.21 -21.07 16 18 C 0.06 2.05 5.99 85.56 0.51 2.56 16 19 C 0.44 20.63 7.82 87.66 0.69 21.32 16 20 O -0.62 -33.59 15.78 -3.06 -0.05 -33.64 16 21 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 22 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.92 -50.26 13.05 21.66 0.28 -49.98 16 26 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 C 0.08 2.01 6.32 86.73 0.55 2.56 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.25 6.78 -2.39 -0.02 1.23 16 34 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.19 2.12 5.91 -2.91 -0.02 2.10 16 36 H 0.08 1.28 7.18 -2.39 -0.02 1.27 16 37 H 0.10 1.31 6.91 -2.38 -0.02 1.29 16 38 H 0.05 1.20 7.36 -2.39 -0.02 1.18 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.34 11.04 8.12 -89.69 -0.73 10.32 16 42 H 0.11 3.23 8.09 -2.39 -0.02 3.21 16 43 H 0.06 1.81 7.82 -2.39 -0.02 1.79 16 44 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 45 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 46 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.04 1.34 7.68 -2.39 -0.02 1.32 16 Total: -1.00 -79.90 385.16 0.41 -79.49 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -1.26 Total: 38.89 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 7.17 Total: 19.79 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -7.41 Total: -126.51 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -0.11 Total: -56.90 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -79.90 0.41 -79.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274289134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.459 kcal (2) G-P(sol) polarization free energy of solvation -79.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds