Wall clock time and date at job start Tue Mar 31 2020 17:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34678 * 126.58767 * 2 1 4 4 N 1.34128 * 108.01631 * 179.97438 * 3 2 1 5 5 C 1.30504 * 109.25626 * 359.72782 * 4 3 2 6 6 N 1.35037 * 108.69892 * 0.44179 * 5 4 3 7 7 C 1.46500 * 126.39360 * 179.82972 * 6 5 4 8 8 C 1.50702 * 109.46969 * 264.68314 * 7 6 5 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99877 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99756 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47018 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.90020 * 59.48343 * 12 11 10 14 14 C 1.54468 * 109.83023 * 180.42332 * 12 11 10 15 15 C 1.55511 * 102.38641 * 140.87803 * 14 12 11 16 16 C 1.53881 * 100.75645 * 327.02646 * 15 14 12 17 17 C 1.52378 * 115.68080 * 263.23256 * 16 15 14 18 18 N 1.47280 * 87.70337 * 218.74937 * 17 16 15 19 19 C 1.36927 * 135.93628 * 206.18043 * 18 17 16 20 20 H 1.08006 * 120.00208 * 6.47422 * 19 18 17 21 21 C 1.38815 * 120.00352 * 186.47863 * 19 18 17 22 22 N 1.31618 * 119.99817 * 6.41305 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 186.41286 * 21 19 18 24 24 H 1.48504 * 109.47051 * 265.01587 * 23 21 19 25 25 H 1.48494 * 109.47274 * 25.01873 * 23 21 19 26 26 H 1.48503 * 109.46714 * 145.02204 * 23 21 19 27 27 C 1.47278 * 88.12529 * 26.43517 * 18 17 16 28 28 O 1.42408 * 106.66965 * 34.98141 * 16 15 14 29 29 H 1.09002 * 109.47440 * 270.04064 * 1 2 3 30 30 H 1.09000 * 109.47246 * 30.04312 * 1 2 3 31 31 H 1.08999 * 109.47276 * 150.04076 * 1 2 3 32 32 H 1.07995 * 125.98729 * 359.96611 * 3 2 1 33 33 H 1.08001 * 125.64936 * 180.29331 * 5 4 3 34 34 H 1.08999 * 109.47268 * 144.68864 * 7 6 5 35 35 H 1.09003 * 109.47722 * 24.68818 * 7 6 5 36 36 H 0.97002 * 120.00481 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.47330 * 60.00386 * 11 10 8 38 38 H 1.08999 * 109.47094 * 300.00116 * 11 10 8 39 39 H 1.08996 * 110.82519 * 259.10099 * 14 12 11 40 40 H 1.08996 * 110.82549 * 22.45638 * 14 12 11 41 41 H 1.08995 * 111.15898 * 209.15325 * 15 14 12 42 42 H 1.09005 * 111.15591 * 84.90369 * 15 14 12 43 43 H 1.08997 * 113.50955 * 104.04378 * 17 16 15 44 44 H 1.08998 * 113.57370 * 333.46730 * 17 16 15 45 45 H 0.96991 * 120.00313 * 180.02562 * 22 21 19 46 46 H 1.08993 * 113.51275 * 88.27972 * 27 18 17 47 47 H 1.09002 * 113.50938 * 218.85735 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0814 0.0000 4 7 3.5812 0.6542 0.0006 5 6 3.5968 -0.6507 0.0068 6 7 2.3230 -1.0989 0.0005 7 6 1.8944 -2.4999 0.0008 8 6 1.6295 -2.9443 -1.4146 9 8 1.7839 -2.1675 -2.3332 10 7 1.2219 -4.2054 -1.6598 11 6 0.9649 -4.6376 -3.0358 12 6 0.5172 -6.1007 -3.0356 13 1 -0.3895 -6.2112 -2.4408 14 6 0.2540 -6.5684 -4.4841 15 6 0.8167 -8.0181 -4.4740 16 6 1.9806 -7.8675 -3.4788 17 6 3.3542 -7.6415 -4.0984 18 7 3.9055 -8.5177 -3.0509 19 6 5.1150 -8.6630 -2.4256 20 1 5.9103 -7.9578 -2.6174 21 6 5.3192 -9.7168 -1.5453 22 7 4.3979 -10.6465 -1.4068 23 14 6.9015 -9.8153 -0.5574 24 1 7.8747 -10.6841 -1.2668 25 1 7.4742 -8.4539 -0.4028 26 1 6.6134 -10.3863 0.7829 27 6 2.5891 -9.1736 -2.9744 28 8 1.5581 -6.9285 -2.4951 29 1 -0.3634 0.0007 1.0277 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3634 -0.8903 -0.5132 32 1 1.9863 2.1118 -0.0005 33 1 4.4818 -1.2696 0.0132 34 1 0.9829 -2.6009 0.5899 35 1 2.6786 -3.1197 0.4355 36 1 1.0988 -4.8268 -0.9253 37 1 1.8765 -4.5363 -3.6248 38 1 0.1806 -4.0181 -3.4708 39 1 -0.8137 -6.5687 -4.7033 40 1 0.7940 -5.9450 -5.1967 41 1 1.1778 -8.3069 -5.4610 42 1 0.0736 -8.7259 -4.1064 43 1 3.6986 -6.6097 -4.0280 44 1 3.4517 -8.0512 -5.1038 45 1 4.5404 -11.3826 -0.7915 46 1 2.4758 -10.0039 -3.6714 47 1 2.2898 -9.4309 -1.9584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280930224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:32 Heat of formation + Delta-G solvation = 49.165566 kcal Electronic energy + Delta-G solvation = -28956.312676 eV Core-core repulsion = 24949.709583 eV Total energy + Delta-G solvation = -4006.603093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.25513 -40.27177 -39.50118 -36.69933 -34.62382 -34.17580 -32.23755 -32.12600 -31.96526 -29.86805 -28.04428 -26.69005 -26.55943 -24.83240 -24.05394 -21.79032 -21.55364 -21.50820 -21.00186 -19.89795 -19.07732 -17.75975 -17.37483 -16.74645 -16.63791 -15.90072 -15.55637 -15.31407 -15.02883 -14.69909 -14.46258 -14.24872 -13.92818 -13.75877 -13.64909 -13.20271 -13.14830 -13.00701 -12.95606 -12.79255 -12.70685 -12.59898 -12.23940 -11.84357 -11.58147 -11.38487 -11.18940 -11.12463 -10.84807 -10.50212 -10.48980 -10.16335 -10.03341 -9.75431 -9.58851 -9.55635 -9.25430 -8.90970 -8.76685 -8.37519 -6.92352 -5.81566 -3.11344 1.81978 2.31027 2.43868 3.03351 3.15394 3.36806 3.42327 3.44416 3.91130 4.34896 4.40817 4.42880 4.53723 4.58039 4.64452 4.67354 4.68487 4.92040 4.93998 5.06978 5.16060 5.27391 5.28705 5.31509 5.38928 5.46194 5.56160 5.58893 5.60827 5.64756 5.76884 5.94253 6.04564 6.16263 6.20343 6.22953 6.34002 6.49187 6.59722 6.64909 6.87612 7.00555 7.10427 7.27193 7.44891 7.65806 7.93161 7.94466 7.99850 9.00271 9.66967 10.59903 11.37649 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003026 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.299304 B = 9252.019141 C =11224.090580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.018 4.018 3 C -0.030 4.030 4 N -0.493 5.493 5 C 0.192 3.808 6 N -0.441 5.441 7 C 0.084 3.916 8 C 0.495 3.505 9 O -0.526 6.526 10 N -0.713 5.713 11 C 0.115 3.885 12 C 0.064 3.936 13 H 0.083 0.917 14 C -0.144 4.144 15 C -0.137 4.137 16 C 0.058 3.942 17 C 0.104 3.896 18 N -0.602 5.602 19 C -0.215 4.215 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.280 1.280 26 H -0.289 1.289 27 C 0.171 3.829 28 O -0.332 6.332 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.167 0.833 33 H 0.204 0.796 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.408 0.592 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.254 0.746 46 H 0.044 0.956 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.395 13.776 0.615 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.131 4.131 3 C -0.178 4.178 4 N -0.210 5.210 5 C -0.090 4.090 6 N -0.125 5.125 7 C -0.043 4.043 8 C 0.279 3.721 9 O -0.402 6.402 10 N -0.365 5.365 11 C -0.009 4.009 12 C 0.005 3.995 13 H 0.101 0.899 14 C -0.183 4.183 15 C -0.175 4.175 16 C 0.017 3.983 17 C -0.023 4.023 18 N -0.327 5.327 19 C -0.342 4.342 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.205 1.205 26 H -0.216 1.216 27 C 0.045 3.955 28 O -0.250 6.250 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.184 0.816 33 H 0.221 0.779 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.243 0.757 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.270 14.585 0.382 19.722 hybrid contribution 0.152 -1.215 0.501 1.323 sum -13.118 13.370 0.883 18.752 Atomic orbital electron populations 1.20188 0.87475 1.03408 1.02265 1.21189 0.94455 0.86761 1.10737 1.21992 0.88470 0.98274 1.09030 1.70269 1.22382 1.08779 1.19582 1.24947 0.86995 0.91815 1.05229 1.44865 1.07492 1.05274 1.54858 1.21684 1.04863 0.81576 0.96208 1.20653 0.77850 0.82564 0.91075 1.90787 1.50748 1.53053 1.45570 1.45786 1.68322 1.12131 1.10271 1.21846 1.01771 0.94390 0.82904 1.23048 0.91669 0.89353 0.95389 0.89947 1.23062 1.02009 0.97477 0.95715 1.22974 0.98085 0.95855 1.00599 1.23416 0.92545 0.93541 0.88813 1.22758 0.90870 0.95763 0.92885 1.45573 1.08843 1.38636 1.39656 1.18912 0.88493 1.08221 1.18609 0.90217 1.24790 0.98370 0.96342 1.00855 1.69831 1.34231 1.13082 1.39609 0.86109 0.82513 0.77634 0.79566 1.21619 1.20523 1.21565 1.22031 0.83418 0.89831 1.00239 1.88352 1.53017 1.47387 1.36266 0.91038 0.89984 0.92027 0.81576 0.77909 0.86253 0.85303 0.75661 0.90781 0.90756 0.90195 0.90308 0.89821 0.90253 0.93987 0.94230 0.93644 0.93884 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.08 36.00 0.36 -0.22 16 2 C -0.02 -0.20 6.95 -81.60 -0.57 -0.77 16 3 C -0.03 -0.38 11.79 -17.81 -0.21 -0.59 16 4 N -0.49 -7.17 11.25 -14.66 -0.16 -7.34 16 5 C 0.19 2.43 12.56 -90.38 -1.13 1.29 16 6 N -0.44 -5.01 2.24 -115.27 -0.26 -5.26 16 7 C 0.08 0.72 6.28 -5.19 -0.03 0.68 16 8 C 0.50 5.84 7.90 -10.98 -0.09 5.76 16 9 O -0.53 -8.53 16.43 5.55 0.09 -8.44 16 10 N -0.71 -7.70 5.47 -60.29 -0.33 -8.03 16 11 C 0.11 1.33 5.23 -4.04 -0.02 1.31 16 12 C 0.06 0.75 3.62 -25.96 -0.09 0.65 16 13 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 14 C -0.14 -1.49 6.56 -24.63 -0.16 -1.65 16 15 C -0.14 -1.75 6.49 -24.94 -0.16 -1.92 16 16 C 0.06 1.02 1.56 -90.66 -0.14 0.88 16 17 C 0.10 2.11 8.24 -7.87 -0.06 2.05 16 18 N -0.60 -15.41 3.77 -184.79 -0.70 -16.10 16 19 C -0.22 -6.06 10.73 -15.06 -0.16 -6.22 16 20 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -27.12 11.82 55.49 0.66 -26.47 16 23 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 C 0.17 3.89 6.79 -7.73 -0.05 3.84 16 28 O -0.33 -5.59 10.69 -35.23 -0.38 -5.97 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.49 7.95 -51.93 -0.41 0.08 16 32 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.20 2.01 8.06 -52.49 -0.42 1.58 16 34 H 0.12 0.66 8.02 -51.93 -0.42 0.25 16 35 H 0.13 0.86 8.13 -51.93 -0.42 0.43 16 36 H 0.41 3.77 8.40 -40.82 -0.34 3.43 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 41 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.76 7.99 -51.93 -0.41 0.35 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.04 0.98 8.13 -51.93 -0.42 0.56 16 47 H 0.07 1.71 7.62 -51.93 -0.40 1.31 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -37.46 392.23 -10.24 -47.70 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.42 Total: 2.17 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -2.62 Total: 4.80 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.79 Total: -63.20 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.29 Total: -14.41 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.46 -10.24 -47.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280930224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.862 kcal (2) G-P(sol) polarization free energy of solvation -37.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds