Wall clock time and date at job start Tue Mar 31 2020 17:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34678 * 126.58767 * 2 1 4 4 N 1.34128 * 108.01631 * 179.97438 * 3 2 1 5 5 C 1.30504 * 109.25626 * 359.72782 * 4 3 2 6 6 N 1.35037 * 108.69892 * 0.44179 * 5 4 3 7 7 C 1.46500 * 126.39360 * 179.82972 * 6 5 4 8 8 C 1.50702 * 109.46969 * 264.68314 * 7 6 5 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99877 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99756 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47018 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.90020 * 59.48343 * 12 11 10 14 14 C 1.54468 * 109.83023 * 180.42332 * 12 11 10 15 15 C 1.55511 * 102.38641 * 140.87803 * 14 12 11 16 16 C 1.53881 * 100.75645 * 327.02646 * 15 14 12 17 17 C 1.52378 * 115.68080 * 263.23256 * 16 15 14 18 18 N 1.47280 * 87.70337 * 218.74937 * 17 16 15 19 19 C 1.36927 * 135.93628 * 206.18043 * 18 17 16 20 20 H 1.08006 * 120.00208 * 6.47422 * 19 18 17 21 21 C 1.38815 * 120.00352 * 186.47863 * 19 18 17 22 22 N 1.31618 * 119.99817 * 6.41305 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 186.41286 * 21 19 18 24 24 H 1.48504 * 109.47051 * 265.01587 * 23 21 19 25 25 H 1.48494 * 109.47274 * 25.01873 * 23 21 19 26 26 H 1.48503 * 109.46714 * 145.02204 * 23 21 19 27 27 C 1.47278 * 88.12529 * 26.43517 * 18 17 16 28 28 O 1.42408 * 106.66965 * 34.98141 * 16 15 14 29 29 H 1.09002 * 109.47440 * 270.04064 * 1 2 3 30 30 H 1.09000 * 109.47246 * 30.04312 * 1 2 3 31 31 H 1.08999 * 109.47276 * 150.04076 * 1 2 3 32 32 H 1.07995 * 125.98729 * 359.96611 * 3 2 1 33 33 H 1.08001 * 125.64936 * 180.29331 * 5 4 3 34 34 H 1.08999 * 109.47268 * 144.68864 * 7 6 5 35 35 H 1.09003 * 109.47722 * 24.68818 * 7 6 5 36 36 H 0.97002 * 120.00481 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.47330 * 60.00386 * 11 10 8 38 38 H 1.08999 * 109.47094 * 300.00116 * 11 10 8 39 39 H 1.08996 * 110.82519 * 259.10099 * 14 12 11 40 40 H 1.08996 * 110.82549 * 22.45638 * 14 12 11 41 41 H 1.08995 * 111.15898 * 209.15325 * 15 14 12 42 42 H 1.09005 * 111.15591 * 84.90369 * 15 14 12 43 43 H 1.08997 * 113.50955 * 104.04378 * 17 16 15 44 44 H 1.08998 * 113.57370 * 333.46730 * 17 16 15 45 45 H 0.96991 * 120.00313 * 180.02562 * 22 21 19 46 46 H 1.08993 * 113.51275 * 88.27972 * 27 18 17 47 47 H 1.09002 * 113.50938 * 218.85735 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0814 0.0000 4 7 3.5812 0.6542 0.0006 5 6 3.5968 -0.6507 0.0068 6 7 2.3230 -1.0989 0.0005 7 6 1.8944 -2.4999 0.0008 8 6 1.6295 -2.9443 -1.4146 9 8 1.7839 -2.1675 -2.3332 10 7 1.2219 -4.2054 -1.6598 11 6 0.9649 -4.6376 -3.0358 12 6 0.5172 -6.1007 -3.0356 13 1 -0.3895 -6.2112 -2.4408 14 6 0.2540 -6.5684 -4.4841 15 6 0.8167 -8.0181 -4.4740 16 6 1.9806 -7.8675 -3.4788 17 6 3.3542 -7.6415 -4.0984 18 7 3.9055 -8.5177 -3.0509 19 6 5.1150 -8.6630 -2.4256 20 1 5.9103 -7.9578 -2.6174 21 6 5.3192 -9.7168 -1.5453 22 7 4.3979 -10.6465 -1.4068 23 14 6.9015 -9.8153 -0.5574 24 1 7.8747 -10.6841 -1.2668 25 1 7.4742 -8.4539 -0.4028 26 1 6.6134 -10.3863 0.7829 27 6 2.5891 -9.1736 -2.9744 28 8 1.5581 -6.9285 -2.4951 29 1 -0.3634 0.0007 1.0277 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3634 -0.8903 -0.5132 32 1 1.9863 2.1118 -0.0005 33 1 4.4818 -1.2696 0.0132 34 1 0.9829 -2.6009 0.5899 35 1 2.6786 -3.1197 0.4355 36 1 1.0988 -4.8268 -0.9253 37 1 1.8765 -4.5363 -3.6248 38 1 0.1806 -4.0181 -3.4708 39 1 -0.8137 -6.5687 -4.7033 40 1 0.7940 -5.9450 -5.1967 41 1 1.1778 -8.3069 -5.4610 42 1 0.0736 -8.7259 -4.1064 43 1 3.6986 -6.6097 -4.0280 44 1 3.4517 -8.0512 -5.1038 45 1 4.5404 -11.3826 -0.7915 46 1 2.4758 -10.0039 -3.6714 47 1 2.2898 -9.4309 -1.9584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280930224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:31 Heat of formation + Delta-G solvation = 23.202117 kcal Electronic energy + Delta-G solvation = -28957.438535 eV Core-core repulsion = 24949.709583 eV Total energy + Delta-G solvation = -4007.728953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.11756 -41.51802 -40.56112 -38.15466 -35.71532 -35.05036 -34.16989 -33.12576 -32.84206 -31.06950 -29.34885 -28.04568 -27.32450 -26.55572 -25.36130 -23.29462 -22.52811 -22.46211 -21.94384 -20.76181 -20.49570 -18.72329 -18.63367 -18.21779 -17.70942 -16.94376 -16.79635 -16.51668 -16.27986 -16.10247 -15.60827 -15.43645 -15.21103 -14.77315 -14.74095 -14.60139 -14.20989 -14.14185 -13.96551 -13.73230 -13.60361 -13.30223 -13.22428 -13.18663 -13.02939 -12.82833 -12.71578 -12.56536 -12.34662 -12.15562 -11.64619 -11.48874 -11.34025 -11.25280 -10.96552 -10.93071 -10.48788 -10.26555 -10.18864 -9.23847 -8.94923 -7.95110 -5.25627 0.95769 1.41639 1.43420 1.44722 1.54384 1.65800 2.15826 2.25138 2.45024 2.75328 3.28681 3.42500 3.51658 3.60221 3.73402 3.75223 3.80152 3.85018 3.87757 3.95154 4.10231 4.21758 4.26231 4.42791 4.51578 4.54829 4.57988 4.71655 4.74365 4.81844 4.83414 4.89876 4.97094 4.99562 5.03061 5.12512 5.17749 5.25057 5.29961 5.33596 5.40766 5.48651 5.81871 5.88862 6.15097 6.34286 6.42512 6.88512 7.06743 7.09868 7.56736 8.58222 9.24137 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003026 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.299304 B = 9252.019141 C =11224.090580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.015 4.015 3 C -0.061 4.061 4 N -0.531 5.531 5 C 0.174 3.826 6 N -0.443 5.443 7 C 0.085 3.915 8 C 0.495 3.505 9 O -0.575 6.575 10 N -0.706 5.706 11 C 0.118 3.882 12 C 0.062 3.938 13 H 0.111 0.889 14 C -0.134 4.134 15 C -0.130 4.130 16 C 0.083 3.917 17 C 0.102 3.898 18 N -0.636 5.636 19 C -0.230 4.230 20 H 0.077 0.923 21 C -0.063 4.063 22 N -0.952 5.952 23 Si 0.978 3.022 24 H -0.286 1.286 25 H -0.270 1.270 26 H -0.290 1.290 27 C 0.166 3.834 28 O -0.359 6.359 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.181 0.819 33 H 0.220 0.780 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.417 0.583 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.250 0.750 46 H 0.038 0.962 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.505 14.268 0.607 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C -0.207 4.207 4 N -0.249 5.249 5 C -0.108 4.108 6 N -0.126 5.126 7 C -0.041 4.041 8 C 0.281 3.719 9 O -0.454 6.454 10 N -0.358 5.358 11 C -0.006 4.006 12 C 0.005 3.995 13 H 0.128 0.872 14 C -0.172 4.172 15 C -0.168 4.168 16 C 0.042 3.958 17 C -0.023 4.023 18 N -0.362 5.362 19 C -0.359 4.359 20 H 0.095 0.905 21 C -0.256 4.256 22 N -0.600 5.600 23 Si 0.805 3.195 24 H -0.213 1.213 25 H -0.195 1.195 26 H -0.216 1.216 27 C 0.041 3.959 28 O -0.278 6.278 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.198 0.802 33 H 0.236 0.764 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.254 0.746 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -15.410 15.076 0.365 21.561 hybrid contribution 0.773 -1.339 0.467 1.615 sum -14.636 13.737 0.832 20.090 Atomic orbital electron populations 1.20303 0.84904 1.03908 1.03877 1.21761 0.96026 0.86374 1.08850 1.22401 0.88319 0.99658 1.10362 1.70202 1.23813 1.10070 1.20815 1.25318 0.88241 0.91768 1.05506 1.45026 1.07098 1.06336 1.54176 1.21951 1.07289 0.80352 0.94501 1.21157 0.76686 0.82196 0.91870 1.90770 1.52978 1.54354 1.47321 1.45785 1.67590 1.12074 1.10392 1.21786 1.00974 0.94785 0.83060 1.23336 0.91028 0.88243 0.96928 0.87163 1.23091 1.04281 0.95209 0.94605 1.22962 0.96185 0.98148 0.99514 1.22938 0.93284 0.90502 0.89092 1.22948 0.92316 0.94491 0.92586 1.45961 1.08904 1.40002 1.41373 1.19250 0.89659 1.08055 1.18898 0.90505 1.25603 1.01654 0.96233 1.02138 1.70001 1.36065 1.13594 1.40362 0.85083 0.78765 0.77858 0.77749 1.21310 1.19477 1.21606 1.22017 0.83361 0.92387 0.98170 1.88315 1.54648 1.47879 1.36984 0.88730 0.89070 0.91906 0.80206 0.76360 0.82562 0.83244 0.74600 0.93634 0.89025 0.86491 0.89897 0.88627 0.88935 0.94516 0.92624 0.94136 0.94479 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.08 71.23 0.72 -0.23 16 2 C -0.02 -0.33 6.95 40.95 0.28 -0.05 16 3 C -0.06 -1.54 11.79 83.53 0.98 -0.55 16 4 N -0.53 -15.72 11.25 -200.31 -2.25 -17.97 16 5 C 0.17 4.38 12.56 180.26 2.26 6.64 16 6 N -0.44 -9.53 2.24 -518.61 -1.16 -10.69 16 7 C 0.08 1.26 6.28 85.63 0.54 1.80 16 8 C 0.50 10.93 7.90 87.66 0.69 11.62 16 9 O -0.57 -18.32 16.43 -3.04 -0.05 -18.37 16 10 N -0.71 -13.85 5.47 -463.03 -2.53 -16.38 16 11 C 0.12 2.49 5.23 86.38 0.45 2.94 16 12 C 0.06 1.26 3.62 31.10 0.11 1.37 16 13 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 14 C -0.13 -2.22 6.56 31.96 0.21 -2.01 16 15 C -0.13 -2.94 6.49 31.76 0.21 -2.73 16 16 C 0.08 2.86 1.56 -10.81 -0.02 2.84 16 17 C 0.10 4.13 8.24 83.47 0.69 4.82 16 18 N -0.64 -33.28 3.77 -739.95 -2.79 -36.07 16 19 C -0.23 -13.28 10.73 84.04 0.90 -12.38 16 20 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 21 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 22 N -0.95 -57.63 11.82 21.65 0.26 -57.38 16 23 Si 0.98 46.05 29.56 68.60 2.03 48.08 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 C 0.17 7.75 6.79 83.57 0.57 8.32 16 28 O -0.36 -11.63 10.69 -148.98 -1.59 -13.23 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.83 7.95 -2.39 -0.02 0.81 16 32 H 0.18 3.63 8.06 -2.91 -0.02 3.60 16 33 H 0.22 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.16 1.16 8.02 -2.39 -0.02 1.14 16 35 H 0.15 1.62 8.13 -2.39 -0.02 1.60 16 36 H 0.42 6.71 8.40 -92.71 -0.78 5.93 16 37 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.36 7.85 -2.39 -0.02 1.34 16 41 H 0.10 1.98 7.93 -2.39 -0.02 1.96 16 42 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 2.08 7.99 -2.39 -0.02 2.06 16 45 H 0.25 14.61 8.31 -92.72 -0.77 13.84 16 46 H 0.04 1.74 8.13 -2.39 -0.02 1.72 16 47 H 0.03 1.55 7.62 -2.39 -0.02 1.53 16 Total: -1.00 -85.69 392.23 1.16 -84.52 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.19 Total: 18.23 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 9.07 Total: 19.25 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -8.48 Total: -138.49 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.64 Total: -31.59 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -85.69 1.16 -84.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280930224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.725 kcal (2) G-P(sol) polarization free energy of solvation -85.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds