Wall clock time and date at job start Tue Mar 31 2020 18:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34493 * 126.83367 * 2 1 4 4 N 1.36447 * 108.85657 * 180.24840 * 3 2 1 5 5 H 0.96993 * 124.85110 * 179.76439 * 4 3 2 6 6 C 1.34659 * 110.30013 * 359.75296 * 4 3 2 7 7 C 1.36773 * 108.39414 * 359.97438 * 6 4 3 8 8 C 1.47264 * 126.94139 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00103 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99700 * 0.03187 * 8 7 6 11 11 C 1.47017 * 125.65357 * 0.02562 * 10 8 7 12 12 C 1.54315 * 107.27451 * 178.90670 * 11 10 8 13 13 H 1.09005 * 110.72207 * 96.17382 * 12 11 10 14 14 N 1.46903 * 110.72128 * 219.44378 * 12 11 10 15 15 C 1.46895 * 111.00277 * 268.52182 * 14 12 11 16 16 C 1.50704 * 109.47392 * 179.97438 * 15 14 12 17 17 O 1.21293 * 119.99554 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99857 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99745 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00039 * 0.02562 * 19 18 16 21 21 C 1.38943 * 120.00080 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00104 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47327 * 90.00309 * 23 21 19 25 25 H 1.48501 * 109.47120 * 210.00128 * 23 21 19 26 26 H 1.48502 * 109.47177 * 329.99678 * 23 21 19 27 27 C 1.55156 * 102.94436 * 337.80810 * 12 11 10 28 28 C 1.47471 * 125.62668 * 179.97438 * 10 8 7 29 29 H 1.09008 * 110.34870 * 85.31950 * 28 10 8 30 30 C 1.53001 * 110.40642 * 322.98869 * 28 10 8 31 31 H 1.09001 * 109.47376 * 270.14544 * 1 2 3 32 32 H 1.08995 * 109.47308 * 30.14983 * 1 2 3 33 33 H 1.09000 * 109.46682 * 150.14805 * 1 2 3 34 34 H 1.07994 * 125.56979 * 359.96382 * 3 2 1 35 35 H 1.07999 * 125.80207 * 179.97438 * 6 4 3 36 36 H 1.08998 * 109.88206 * 59.48651 * 11 10 8 37 37 H 1.09007 * 109.88177 * 298.32523 * 11 10 8 38 38 H 1.00898 * 110.99667 * 32.48098 * 14 12 11 39 39 H 1.09002 * 109.47366 * 300.00226 * 15 14 12 40 40 H 1.09006 * 109.46971 * 59.99689 * 15 14 12 41 41 H 0.97002 * 120.00006 * 0.02562 * 18 16 15 42 42 H 0.96998 * 120.00208 * 179.97438 * 22 21 19 43 43 H 1.09002 * 111.00677 * 153.57697 * 27 12 11 44 44 H 1.09002 * 111.00564 * 277.38955 * 27 12 11 45 45 H 1.08998 * 109.46676 * 304.59236 * 30 28 10 46 46 H 1.09000 * 109.47559 * 64.59168 * 30 28 10 47 47 H 1.09001 * 109.47084 * 184.59703 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0765 0.0000 4 7 3.6111 0.6553 -0.0056 5 1 4.3839 1.2414 -0.0100 6 6 3.6657 -0.6901 -0.0038 7 6 2.3864 -1.1740 0.0036 8 6 1.9750 -2.5880 0.0074 9 8 0.7937 -2.8776 0.0136 10 7 2.9075 -3.5611 0.0041 11 6 4.3629 -3.3533 -0.0027 12 6 5.0249 -4.7470 0.0237 13 1 5.2875 -5.0684 -0.9842 14 7 6.2080 -4.7441 0.8945 15 6 7.4222 -4.4246 0.1320 16 6 8.6122 -4.4303 1.0567 17 8 8.4634 -4.6768 2.2350 18 7 9.8418 -4.1626 0.5742 19 6 10.9243 -4.1673 1.4156 20 1 10.7917 -4.3859 2.4649 21 6 12.1919 -3.8908 0.9183 22 7 12.3533 -3.6253 -0.3586 23 14 13.6669 -3.8979 2.0645 24 1 14.2530 -5.2616 2.1086 25 1 14.6846 -2.9375 1.5674 26 1 13.2356 -3.5000 3.4287 27 6 3.9103 -5.6500 0.6149 28 6 2.6364 -5.0107 0.0078 29 1 2.4794 -5.3695 -1.0095 30 6 1.4173 -5.3232 0.8778 31 1 -0.3634 0.0026 1.0276 32 1 -0.3633 0.8886 -0.5161 33 1 -0.3633 -0.8913 -0.5115 34 1 1.9868 2.1059 -0.0006 35 1 4.5665 -1.2859 -0.0077 36 1 4.6603 -2.7849 0.8784 37 1 4.6570 -2.8203 -0.9070 38 1 6.0872 -4.1055 1.6664 39 1 7.5662 -5.1695 -0.6507 40 1 7.3184 -3.4382 -0.3200 41 1 9.9608 -3.9659 -0.3682 42 1 13.2382 -3.4319 -0.7057 43 1 4.0259 -6.6817 0.2826 44 1 3.8965 -5.5917 1.7033 45 1 1.5734 -4.9224 1.8793 46 1 0.5304 -4.8669 0.4381 47 1 1.2796 -6.4029 0.9360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284031151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:05 Heat of formation + Delta-G solvation = -13.719565 kcal Electronic energy + Delta-G solvation = -28647.831551 eV Core-core repulsion = 24638.501554 eV Total energy + Delta-G solvation = -4009.329997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48300 -40.00445 -38.40661 -37.49718 -34.80338 -33.84896 -32.63952 -32.47945 -31.30864 -30.02950 -29.44272 -26.80554 -26.39039 -25.94895 -24.20825 -23.34742 -21.29274 -21.20345 -19.86548 -19.30355 -18.90108 -17.98450 -17.84276 -16.85348 -16.33000 -16.04852 -15.29839 -15.14777 -14.74672 -14.61135 -14.42600 -14.03897 -13.92023 -13.82293 -13.55721 -13.50540 -13.23412 -12.88745 -12.81561 -12.62726 -12.49817 -12.37162 -12.18226 -12.04086 -11.72722 -11.58776 -11.56533 -11.31330 -11.08882 -11.08174 -10.80718 -10.44313 -10.27625 -9.61550 -9.57066 -8.91630 -8.67467 -8.53149 -8.48678 -8.17427 -8.02818 -6.48024 -3.89011 1.60018 2.20390 2.80778 3.08599 3.13411 3.22654 3.28042 3.46668 3.82868 3.99327 4.20542 4.38619 4.41990 4.62965 4.79348 4.87826 4.94987 4.99028 5.06841 5.13378 5.16985 5.19353 5.25924 5.37450 5.43483 5.48613 5.60841 5.63535 5.67990 5.71532 5.82305 5.88843 5.91308 5.94903 6.10264 6.12709 6.20906 6.21307 6.45902 6.61818 6.70145 7.08579 7.20007 7.45767 7.49446 7.54356 7.99652 8.28022 8.54169 9.11610 9.47191 9.98283 10.69577 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.002489 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.681857 B =11246.505227 C =12733.086676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.111 4.111 3 C -0.027 4.027 4 N -0.549 5.549 5 H 0.419 0.581 6 C 0.038 3.962 7 C -0.227 4.227 8 C 0.606 3.394 9 O -0.541 6.541 10 N -0.611 5.611 11 C 0.065 3.935 12 C 0.077 3.923 13 H 0.095 0.905 14 N -0.653 5.653 15 C 0.048 3.952 16 C 0.439 3.561 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.117 4.117 28 C 0.135 3.865 29 H 0.075 0.925 30 C -0.160 4.160 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.168 0.832 35 H 0.180 0.820 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.352 0.648 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.012 6.682 -4.348 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C -0.155 4.155 4 N -0.143 5.143 5 H 0.255 0.745 6 C -0.098 4.098 7 C -0.238 4.238 8 C 0.398 3.602 9 O -0.420 6.420 10 N -0.346 5.346 11 C -0.060 4.060 12 C -0.035 4.035 13 H 0.113 0.887 14 N -0.284 5.284 15 C -0.084 4.084 16 C 0.224 3.776 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.155 4.155 28 C 0.032 3.968 29 H 0.093 0.907 30 C -0.218 4.218 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.185 0.815 35 H 0.197 0.803 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.173 0.827 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.415 5.902 -3.683 20.624 hybrid contribution 1.484 1.476 -0.309 2.116 sum -17.931 7.378 -3.991 19.796 Atomic orbital electron populations 1.20172 0.89334 1.02459 1.01890 1.20534 0.95578 0.90263 1.05351 1.21602 0.82523 0.99217 1.12164 1.41591 1.08382 1.06851 1.57483 0.74478 1.22730 0.99299 0.83881 1.03901 1.20316 0.92668 0.92641 1.18172 1.17029 0.84359 0.83325 0.75483 1.90682 1.16699 1.83158 1.51475 1.48314 1.05788 1.06346 1.74131 1.23230 0.81409 1.00005 1.01398 1.22710 0.90537 0.92410 0.97797 0.88681 1.60155 0.99853 1.58270 1.10171 1.21768 0.90360 0.99856 0.96465 1.19783 0.84120 0.84646 0.89031 1.90539 1.85133 1.53919 1.17080 1.41865 1.05446 1.61153 1.11464 1.19701 0.84736 1.44763 0.93728 0.87901 1.25262 0.99077 0.97111 0.96445 1.69607 1.24430 1.47677 1.12576 0.85860 0.80342 0.78120 0.80001 1.20324 1.20932 1.19411 1.22909 0.91556 0.99276 1.01808 1.21955 0.95936 0.79359 0.99506 0.90747 1.22112 0.98626 1.01201 0.99832 0.91906 0.92482 0.90380 0.81470 0.80304 0.91000 0.91156 0.82672 0.89302 0.93846 0.77465 0.91832 0.89430 0.89795 0.92655 0.89815 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.97 36.00 0.36 -0.47 16 2 C -0.11 -1.25 6.35 -102.54 -0.65 -1.90 16 3 C -0.03 -0.24 11.82 -16.82 -0.20 -0.44 16 4 N -0.55 -4.29 5.90 -12.85 -0.08 -4.37 16 5 H 0.42 1.98 8.96 -40.82 -0.37 1.62 16 6 C 0.04 0.37 10.42 -16.84 -0.18 0.20 16 7 C -0.23 -2.80 6.26 -103.35 -0.65 -3.45 16 8 C 0.61 8.34 7.62 -12.59 -0.10 8.24 16 9 O -0.54 -8.63 13.04 5.25 0.07 -8.57 16 10 N -0.61 -7.15 3.24 -164.32 -0.53 -7.69 16 11 C 0.07 0.65 4.72 -3.07 -0.01 0.64 16 12 C 0.08 0.83 3.28 -65.88 -0.22 0.62 16 13 H 0.10 0.95 7.83 -51.93 -0.41 0.54 16 14 N -0.65 -9.29 6.01 -106.05 -0.64 -9.93 16 15 C 0.05 0.75 6.03 -4.98 -0.03 0.72 16 16 C 0.44 9.73 7.82 -10.98 -0.09 9.65 16 17 O -0.58 -15.15 15.78 5.55 0.09 -15.06 16 18 N -0.56 -13.59 5.29 -10.96 -0.06 -13.65 16 19 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -23.82 13.05 55.50 0.72 -23.09 16 23 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 C -0.12 -1.21 6.19 -24.57 -0.15 -1.36 16 28 C 0.14 1.46 3.77 -66.38 -0.25 1.21 16 29 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 30 C -0.16 -1.78 8.59 37.16 0.32 -1.46 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.94 6.86 -51.93 -0.36 0.59 16 34 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.18 1.47 4.42 -52.49 -0.23 1.24 16 36 H 0.07 0.73 6.22 -51.93 -0.32 0.40 16 37 H 0.07 0.62 7.03 -51.93 -0.37 0.26 16 38 H 0.35 5.25 7.74 -39.29 -0.30 4.94 16 39 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.39 9.00 7.90 -40.82 -0.32 8.68 16 42 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.09 6.09 -51.93 -0.32 0.77 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -33.62 380.93 -8.51 -42.13 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -6.72 Total: 14.53 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.08 Total: 4.44 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.58 Total: -58.72 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.16 Total: -23.63 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.62 -8.51 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284031151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.410 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds