Wall clock time and date at job start Tue Mar 31 2020 18:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34493 * 126.83367 * 2 1 4 4 N 1.36447 * 108.85657 * 180.24840 * 3 2 1 5 5 H 0.96993 * 124.85110 * 179.76439 * 4 3 2 6 6 C 1.34659 * 110.30013 * 359.75296 * 4 3 2 7 7 C 1.36773 * 108.39414 * 359.97438 * 6 4 3 8 8 C 1.47264 * 126.94139 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00103 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99700 * 0.03187 * 8 7 6 11 11 C 1.47017 * 125.65357 * 0.02562 * 10 8 7 12 12 C 1.54315 * 107.27451 * 178.90670 * 11 10 8 13 13 H 1.09005 * 110.72207 * 96.17382 * 12 11 10 14 14 N 1.46903 * 110.72128 * 219.44378 * 12 11 10 15 15 C 1.46895 * 111.00277 * 268.52182 * 14 12 11 16 16 C 1.50704 * 109.47392 * 179.97438 * 15 14 12 17 17 O 1.21293 * 119.99554 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99857 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99745 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00039 * 0.02562 * 19 18 16 21 21 C 1.38943 * 120.00080 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00104 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47327 * 90.00309 * 23 21 19 25 25 H 1.48501 * 109.47120 * 210.00128 * 23 21 19 26 26 H 1.48502 * 109.47177 * 329.99678 * 23 21 19 27 27 C 1.55156 * 102.94436 * 337.80810 * 12 11 10 28 28 C 1.47471 * 125.62668 * 179.97438 * 10 8 7 29 29 H 1.09008 * 110.34870 * 85.31950 * 28 10 8 30 30 C 1.53001 * 110.40642 * 322.98869 * 28 10 8 31 31 H 1.09001 * 109.47376 * 270.14544 * 1 2 3 32 32 H 1.08995 * 109.47308 * 30.14983 * 1 2 3 33 33 H 1.09000 * 109.46682 * 150.14805 * 1 2 3 34 34 H 1.07994 * 125.56979 * 359.96382 * 3 2 1 35 35 H 1.07999 * 125.80207 * 179.97438 * 6 4 3 36 36 H 1.08998 * 109.88206 * 59.48651 * 11 10 8 37 37 H 1.09007 * 109.88177 * 298.32523 * 11 10 8 38 38 H 1.00898 * 110.99667 * 32.48098 * 14 12 11 39 39 H 1.09002 * 109.47366 * 300.00226 * 15 14 12 40 40 H 1.09006 * 109.46971 * 59.99689 * 15 14 12 41 41 H 0.97002 * 120.00006 * 0.02562 * 18 16 15 42 42 H 0.96998 * 120.00208 * 179.97438 * 22 21 19 43 43 H 1.09002 * 111.00677 * 153.57697 * 27 12 11 44 44 H 1.09002 * 111.00564 * 277.38955 * 27 12 11 45 45 H 1.08998 * 109.46676 * 304.59236 * 30 28 10 46 46 H 1.09000 * 109.47559 * 64.59168 * 30 28 10 47 47 H 1.09001 * 109.47084 * 184.59703 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0765 0.0000 4 7 3.6111 0.6553 -0.0056 5 1 4.3839 1.2414 -0.0100 6 6 3.6657 -0.6901 -0.0038 7 6 2.3864 -1.1740 0.0036 8 6 1.9750 -2.5880 0.0074 9 8 0.7937 -2.8776 0.0136 10 7 2.9075 -3.5611 0.0041 11 6 4.3629 -3.3533 -0.0027 12 6 5.0249 -4.7470 0.0237 13 1 5.2875 -5.0684 -0.9842 14 7 6.2080 -4.7441 0.8945 15 6 7.4222 -4.4246 0.1320 16 6 8.6122 -4.4303 1.0567 17 8 8.4634 -4.6768 2.2350 18 7 9.8418 -4.1626 0.5742 19 6 10.9243 -4.1673 1.4156 20 1 10.7917 -4.3859 2.4649 21 6 12.1919 -3.8908 0.9183 22 7 12.3533 -3.6253 -0.3586 23 14 13.6669 -3.8979 2.0645 24 1 14.2530 -5.2616 2.1086 25 1 14.6846 -2.9375 1.5674 26 1 13.2356 -3.5000 3.4287 27 6 3.9103 -5.6500 0.6149 28 6 2.6364 -5.0107 0.0078 29 1 2.4794 -5.3695 -1.0095 30 6 1.4173 -5.3232 0.8778 31 1 -0.3634 0.0026 1.0276 32 1 -0.3633 0.8886 -0.5161 33 1 -0.3633 -0.8913 -0.5115 34 1 1.9868 2.1059 -0.0006 35 1 4.5665 -1.2859 -0.0077 36 1 4.6603 -2.7849 0.8784 37 1 4.6570 -2.8203 -0.9070 38 1 6.0872 -4.1055 1.6664 39 1 7.5662 -5.1695 -0.6507 40 1 7.3184 -3.4382 -0.3200 41 1 9.9608 -3.9659 -0.3682 42 1 13.2382 -3.4319 -0.7057 43 1 4.0259 -6.6817 0.2826 44 1 3.8965 -5.5917 1.7033 45 1 1.5734 -4.9224 1.8793 46 1 0.5304 -4.8669 0.4381 47 1 1.2796 -6.4029 0.9360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284031151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:04 Heat of formation + Delta-G solvation = -38.621218 kcal Electronic energy + Delta-G solvation = -28648.911368 eV Core-core repulsion = 24638.501554 eV Total energy + Delta-G solvation = -4010.409814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23911 -40.90508 -40.05914 -38.60682 -36.18992 -35.53535 -33.46308 -33.28902 -33.23190 -31.11473 -30.24050 -27.91424 -27.55580 -26.82102 -25.78719 -24.31654 -22.11886 -22.09244 -21.11455 -20.55478 -19.88654 -19.69455 -18.63336 -17.85225 -17.67751 -17.12025 -16.71194 -16.26344 -16.06997 -15.97708 -15.51543 -15.30015 -15.17131 -14.83100 -14.58124 -14.33268 -14.12785 -14.00907 -13.92454 -13.60847 -13.47489 -13.45954 -13.33242 -13.20855 -12.99196 -12.95297 -12.78982 -12.40060 -12.37180 -12.19488 -12.12049 -11.98843 -11.68897 -11.48730 -10.61442 -10.30920 -9.98828 -9.80528 -9.49904 -9.28435 -9.20430 -8.45138 -5.93038 0.76172 1.38903 1.43430 1.47831 1.55026 1.95423 2.09268 2.30228 2.43970 2.54061 2.91986 3.23048 3.41144 3.56346 3.66479 3.90765 4.04271 4.10101 4.13246 4.20265 4.30276 4.36760 4.40069 4.45816 4.51598 4.60653 4.63149 4.65310 4.71739 4.81299 4.85925 4.92032 4.97035 5.08867 5.14100 5.25379 5.31514 5.32640 5.43349 5.56776 5.83074 5.91847 5.95817 6.12488 6.35301 6.59025 6.62934 6.64333 7.15586 7.31639 7.60029 8.15608 8.72053 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.002489 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.681857 B =11246.505227 C =12733.086676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.149 4.149 3 C -0.010 4.010 4 N -0.537 5.537 5 H 0.435 0.565 6 C 0.046 3.954 7 C -0.264 4.264 8 C 0.596 3.404 9 O -0.577 6.577 10 N -0.611 5.611 11 C 0.067 3.933 12 C 0.083 3.917 13 H 0.114 0.886 14 N -0.666 5.666 15 C 0.063 3.937 16 C 0.438 3.562 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.331 4.331 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.988 3.012 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.110 4.110 28 C 0.134 3.866 29 H 0.085 0.915 30 C -0.153 4.153 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.201 0.799 35 H 0.195 0.805 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.347 0.653 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.062 0.938 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.138 7.707 -5.434 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.155 4.155 3 C -0.139 4.139 4 N -0.132 5.132 5 H 0.275 0.725 6 C -0.092 4.092 7 C -0.274 4.274 8 C 0.389 3.611 9 O -0.459 6.459 10 N -0.345 5.345 11 C -0.057 4.057 12 C -0.028 4.028 13 H 0.132 0.868 14 N -0.297 5.297 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.511 6.511 18 N -0.211 5.211 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.812 3.188 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.148 4.148 28 C 0.031 3.969 29 H 0.103 0.897 30 C -0.211 4.211 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.218 0.782 35 H 0.212 0.788 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.167 0.833 39 H 0.127 0.873 40 H 0.094 0.906 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.518 6.937 -4.799 20.349 hybrid contribution 1.153 1.159 0.053 1.635 sum -17.365 8.095 -4.747 19.738 Atomic orbital electron populations 1.20087 0.89441 1.02227 1.01516 1.20820 0.96140 0.91043 1.07510 1.22048 0.82256 0.99997 1.09573 1.41653 1.08959 1.06489 1.56065 0.72457 1.22864 0.98801 0.84764 1.02750 1.20454 0.94235 0.92247 1.20500 1.17398 0.84202 0.84336 0.75170 1.90658 1.18099 1.83798 1.53305 1.48358 1.06312 1.06428 1.73385 1.23267 0.80278 0.99807 1.02384 1.22728 0.89198 0.92870 0.97973 0.86809 1.60127 1.00481 1.58461 1.10662 1.21651 0.87810 1.02409 0.95049 1.20948 0.85108 0.82051 0.89371 1.90513 1.85974 1.55142 1.19509 1.41925 1.05729 1.62024 1.11390 1.19625 0.86490 1.46677 0.93278 0.90465 1.25961 1.00949 0.96326 0.97890 1.69657 1.25252 1.47684 1.13468 0.84993 0.77386 0.78385 0.77998 1.19865 1.19619 1.19826 1.22847 0.91080 0.99979 1.00933 1.22039 0.95823 0.79135 0.99915 0.89720 1.22017 0.98072 1.02154 0.98834 0.92396 0.90175 0.93036 0.78174 0.78838 0.90947 0.89211 0.83300 0.87308 0.90555 0.76863 0.91360 0.88062 0.91156 0.94126 0.91950 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 9.97 71.24 0.71 -0.86 16 2 C -0.15 -3.27 6.35 -18.51 -0.12 -3.38 16 3 C -0.01 -0.16 11.82 83.12 0.98 0.83 16 4 N -0.54 -6.93 5.90 -194.56 -1.15 -8.08 16 5 H 0.44 2.68 8.96 -92.71 -0.83 1.85 16 6 C 0.05 0.81 10.42 83.92 0.87 1.68 16 7 C -0.26 -6.39 6.26 -19.04 -0.12 -6.50 16 8 C 0.60 16.66 7.62 86.62 0.66 17.32 16 9 O -0.58 -19.40 13.04 -4.12 -0.05 -19.45 16 10 N -0.61 -13.88 3.24 -792.02 -2.57 -16.44 16 11 C 0.07 1.21 4.72 86.73 0.41 1.62 16 12 C 0.08 1.58 3.28 46.10 0.15 1.73 16 13 H 0.11 1.81 7.83 -2.38 -0.02 1.79 16 14 N -0.67 -17.58 6.01 -489.45 -2.94 -20.52 16 15 C 0.06 1.80 6.03 85.56 0.52 2.31 16 16 C 0.44 19.10 7.82 87.66 0.69 19.79 16 17 O -0.62 -32.75 15.78 -3.07 -0.05 -32.80 16 18 N -0.57 -27.53 5.29 -306.99 -1.62 -29.15 16 19 C -0.33 -18.05 9.68 84.04 0.81 -17.24 16 20 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 21 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 22 N -0.92 -47.75 13.05 21.66 0.28 -47.47 16 23 Si 0.99 41.65 29.55 68.60 2.03 43.67 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C -0.11 -2.10 6.19 31.99 0.20 -1.90 16 28 C 0.13 2.75 3.77 45.47 0.17 2.93 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 C -0.15 -3.45 8.59 71.98 0.62 -2.84 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.33 6.86 -2.39 -0.02 1.31 16 34 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.20 2.67 4.42 -2.91 -0.01 2.65 16 36 H 0.07 1.32 6.22 -2.39 -0.01 1.31 16 37 H 0.09 1.30 7.03 -2.38 -0.02 1.28 16 38 H 0.35 9.88 7.74 -89.70 -0.69 9.19 16 39 H 0.11 2.76 8.08 -2.39 -0.02 2.74 16 40 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.40 17.93 7.90 -92.71 -0.73 17.20 16 42 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 43 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16 45 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.70 6.09 -2.39 -0.01 1.69 16 47 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -75.19 380.93 -0.27 -75.46 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -1.22 Total: 39.42 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 7.02 Total: 15.36 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -8.00 Total: -121.66 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -0.10 Total: -52.25 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -75.19 -0.27 -75.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284031151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.840 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds