Wall clock time and date at job start Tue Mar 31 2020 18:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34486 * 126.83628 * 2 1 4 4 N 1.36451 * 108.85894 * 179.97438 * 3 2 1 5 5 H 0.96996 * 124.85083 * 180.02562 * 4 3 2 6 6 C 1.34660 * 110.29554 * 359.72762 * 4 3 2 7 7 C 1.36772 * 108.39692 * 0.43996 * 6 4 3 8 8 C 1.47267 * 126.94285 * 179.83422 * 7 6 4 9 9 O 1.21627 * 120.00056 * 188.25541 * 8 7 6 10 10 N 1.34777 * 119.99637 * 8.26439 * 8 7 6 11 11 C 1.47426 * 125.65063 * 358.66690 * 10 8 7 12 12 C 1.54907 * 104.83279 * 155.83834 * 11 10 8 13 13 H 1.09007 * 111.00588 * 278.93509 * 12 11 10 14 14 N 1.46900 * 111.00733 * 155.11887 * 12 11 10 15 15 C 1.46895 * 110.99893 * 89.57958 * 14 12 11 16 16 C 1.50697 * 109.47327 * 180.02562 * 15 14 12 17 17 O 1.21296 * 119.99972 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00399 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00447 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99337 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00481 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99513 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00206 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47206 * 90.00070 * 23 21 19 25 25 H 1.48494 * 109.47373 * 210.00162 * 23 21 19 26 26 H 1.48507 * 109.47335 * 330.00226 * 23 21 19 27 27 C 1.55161 * 101.61840 * 37.02399 * 12 11 10 28 28 C 1.47024 * 125.64697 * 178.62497 * 10 8 7 29 29 H 1.09004 * 109.88178 * 300.51158 * 28 10 8 30 30 C 1.53003 * 109.88186 * 61.67257 * 28 10 8 31 31 H 1.09004 * 109.46995 * 270.04595 * 1 2 3 32 32 H 1.09002 * 109.47217 * 30.04564 * 1 2 3 33 33 H 1.09000 * 109.47527 * 150.04647 * 1 2 3 34 34 H 1.08000 * 125.57133 * 359.93502 * 3 2 1 35 35 H 1.08004 * 125.80175 * 180.30744 * 6 4 3 36 36 H 1.08995 * 110.36811 * 36.99348 * 11 10 8 37 37 H 1.09006 * 110.45414 * 274.71969 * 11 10 8 38 38 H 1.00894 * 111.00011 * 325.62606 * 14 12 11 39 39 H 1.09000 * 109.47391 * 300.00401 * 15 14 12 40 40 H 1.09001 * 109.47427 * 59.99770 * 15 14 12 41 41 H 0.97001 * 120.00009 * 0.02562 * 18 16 15 42 42 H 0.97004 * 119.99395 * 179.97438 * 22 21 19 43 43 H 1.08997 * 110.71767 * 82.84686 * 27 12 11 44 44 H 1.09003 * 110.71861 * 206.11594 * 27 12 11 45 45 H 1.08997 * 109.46722 * 58.54852 * 30 28 10 46 46 H 1.08998 * 109.46789 * 178.55001 * 30 28 10 47 47 H 1.08996 * 109.46916 * 298.54865 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 0.0006 5 1 4.3840 1.2413 0.0011 6 6 3.6656 -0.6903 0.0070 7 6 2.3863 -1.1741 0.0007 8 6 1.9748 -2.5881 0.0010 9 8 0.8048 -2.8810 -0.1562 10 7 2.8947 -3.5575 0.1756 11 6 4.3434 -3.3463 0.3487 12 6 4.8400 -4.6037 1.1049 13 1 4.6461 -4.5186 2.1742 14 7 6.2665 -4.8432 0.8487 15 6 7.1028 -4.1424 1.8322 16 6 8.5562 -4.4105 1.5377 17 8 8.8650 -5.1157 0.6003 18 7 9.5130 -3.8659 2.3151 19 6 10.8352 -4.1103 2.0475 20 1 11.1100 -4.7396 1.2138 21 6 11.8217 -3.5493 2.8493 22 7 11.4871 -2.7849 3.8645 23 14 13.6231 -3.8828 2.4850 24 1 14.1398 -2.8477 1.5541 25 1 14.3997 -3.8428 3.7501 26 1 13.7621 -5.2233 1.8611 27 6 3.9661 -5.7166 0.4683 28 6 2.6194 -5.0009 0.2258 29 1 1.9315 -5.2189 1.0428 30 6 2.0168 -5.4622 -1.1027 31 1 -0.3633 0.0008 1.0277 32 1 -0.3634 0.8896 -0.5145 33 1 -0.3634 -0.8904 -0.5131 34 1 1.9868 2.1058 -0.0010 35 1 4.5664 -1.2861 0.0135 36 1 4.5280 -2.4499 0.9407 37 1 4.8354 -3.2677 -0.6209 38 1 6.5146 -4.5768 -0.0922 39 1 6.9122 -3.0708 1.7734 40 1 6.8628 -4.4996 2.8337 41 1 9.2662 -3.3017 3.0645 42 1 12.1758 -2.3936 4.4245 43 1 4.3982 -6.0549 -0.4735 44 1 3.8414 -6.5512 1.1584 45 1 2.7084 -5.2346 -1.9138 46 1 1.8393 -6.5371 -1.0674 47 1 1.0734 -4.9437 -1.2733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284031152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:08 Heat of formation + Delta-G solvation = -13.203225 kcal Electronic energy + Delta-G solvation = -28630.326370 eV Core-core repulsion = 24621.018763 eV Total energy + Delta-G solvation = -4009.307607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50175 -39.98887 -38.39973 -37.52159 -34.83347 -33.85141 -32.62177 -32.49038 -31.30844 -30.01478 -29.49265 -26.83282 -26.39104 -26.00129 -24.21646 -23.39576 -21.24181 -21.18288 -19.92569 -19.30155 -18.94322 -17.99762 -17.88456 -16.86932 -16.31723 -16.04703 -15.36231 -15.06945 -14.75013 -14.58838 -14.35233 -14.11554 -13.99866 -13.84194 -13.53677 -13.47014 -13.20231 -12.95574 -12.81606 -12.68358 -12.51811 -12.43893 -12.19310 -12.09389 -11.73119 -11.59375 -11.56477 -11.26822 -11.08283 -11.01430 -10.76928 -10.44130 -10.27570 -9.82086 -9.57259 -8.92535 -8.68316 -8.54486 -8.49941 -8.16996 -8.02892 -6.48090 -3.89023 1.58673 2.19297 2.79042 3.07424 3.13063 3.22577 3.28404 3.44499 3.82716 3.97248 4.18751 4.41340 4.47503 4.59248 4.75297 4.89612 4.90753 4.96961 5.07399 5.13479 5.15786 5.18528 5.24905 5.34727 5.39378 5.53370 5.57944 5.60274 5.67822 5.70182 5.82674 5.88255 5.88987 5.92678 6.05629 6.09973 6.17421 6.22423 6.36728 6.60161 6.68663 7.07980 7.18835 7.46485 7.49390 7.52510 7.99560 8.25708 8.54058 9.11528 9.47124 9.98149 10.69513 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.002519 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.359078 B =11114.779111 C =12728.014713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.111 4.111 3 C -0.026 4.026 4 N -0.549 5.549 5 H 0.419 0.581 6 C 0.036 3.964 7 C -0.226 4.226 8 C 0.606 3.394 9 O -0.543 6.543 10 N -0.609 5.609 11 C 0.056 3.944 12 C 0.077 3.923 13 H 0.095 0.905 14 N -0.652 5.652 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.116 4.116 28 C 0.136 3.864 29 H 0.076 0.924 30 C -0.161 4.161 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.168 0.832 35 H 0.183 0.817 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.352 0.648 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.586 6.668 -5.071 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.154 4.154 4 N -0.143 5.143 5 H 0.255 0.745 6 C -0.100 4.100 7 C -0.237 4.237 8 C 0.397 3.603 9 O -0.422 6.422 10 N -0.344 5.344 11 C -0.069 4.069 12 C -0.035 4.035 13 H 0.113 0.887 14 N -0.283 5.283 15 C -0.084 4.084 16 C 0.224 3.776 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.155 4.155 28 C 0.033 3.967 29 H 0.094 0.906 30 C -0.219 4.219 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.186 0.814 35 H 0.199 0.801 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.173 0.827 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.813 5.694 -5.319 20.363 hybrid contribution 1.302 1.570 0.151 2.045 sum -17.511 7.264 -5.168 19.650 Atomic orbital electron populations 1.20196 0.89359 1.02666 1.01853 1.20528 0.95579 0.90249 1.05401 1.21606 0.82524 0.99222 1.12057 1.41603 1.08385 1.06849 1.57467 0.74451 1.22786 0.99280 0.83870 1.04103 1.20294 0.92696 0.92582 1.18110 1.17048 0.84185 0.83360 0.75677 1.90715 1.17370 1.83270 1.50816 1.48283 1.07039 1.06381 1.72674 1.23593 0.81797 1.00872 1.00632 1.22836 0.88608 0.92217 0.99795 0.88688 1.60110 1.00052 1.60783 1.07364 1.21750 0.93298 0.96187 0.97152 1.19776 0.86358 0.85398 0.86026 1.90537 1.82685 1.41520 1.31938 1.41865 1.05779 1.44310 1.27965 1.19703 0.80789 1.28786 1.13649 0.87887 1.25265 1.00626 0.96427 0.95587 1.69611 1.34716 1.32644 1.17311 0.85858 0.81689 0.79079 0.77688 1.20424 1.20892 1.19351 1.22775 0.92539 0.97677 1.02501 1.21612 0.97225 0.79377 0.98455 0.90618 1.22129 1.02015 1.01282 0.96505 0.91975 0.92408 0.90197 0.81449 0.80060 0.89847 0.90993 0.82695 0.93874 0.89336 0.77474 0.91835 0.89696 0.89529 0.92571 0.91710 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.06 36.00 0.36 -0.49 16 2 C -0.11 -1.24 6.35 -102.54 -0.65 -1.89 16 3 C -0.03 -0.22 11.82 -16.82 -0.20 -0.42 16 4 N -0.55 -4.18 5.90 -12.84 -0.08 -4.26 16 5 H 0.42 1.90 8.96 -40.82 -0.37 1.53 16 6 C 0.04 0.34 10.25 -16.84 -0.17 0.17 16 7 C -0.23 -2.76 6.23 -103.35 -0.64 -3.40 16 8 C 0.61 8.33 7.64 -12.59 -0.10 8.24 16 9 O -0.54 -8.84 14.29 5.25 0.08 -8.77 16 10 N -0.61 -7.10 3.06 -164.26 -0.50 -7.60 16 11 C 0.06 0.56 4.90 -2.53 -0.01 0.55 16 12 C 0.08 0.84 3.34 -65.56 -0.22 0.62 16 13 H 0.10 1.02 7.87 -51.93 -0.41 0.61 16 14 N -0.65 -9.18 6.02 -105.73 -0.64 -9.82 16 15 C 0.05 0.76 6.05 -4.98 -0.03 0.73 16 16 C 0.44 9.71 7.82 -10.99 -0.09 9.62 16 17 O -0.58 -15.06 15.78 5.54 0.09 -14.97 16 18 N -0.56 -13.57 5.29 -10.96 -0.06 -13.63 16 19 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 20 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -23.80 13.05 55.50 0.72 -23.08 16 23 Si 0.93 20.50 29.55 -169.99 -5.02 15.47 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 C -0.12 -1.18 6.18 -24.84 -0.15 -1.34 16 28 C 0.14 1.48 3.47 -66.90 -0.23 1.24 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 C -0.16 -1.71 9.11 37.16 0.34 -1.37 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.98 6.74 -51.93 -0.35 0.63 16 34 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.18 1.44 4.74 -52.48 -0.25 1.19 16 36 H 0.08 0.76 5.31 -51.93 -0.28 0.48 16 37 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 38 H 0.35 5.09 7.94 -39.29 -0.31 4.78 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 41 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 42 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.08 0.89 7.85 -51.93 -0.41 0.49 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.87 6.84 -51.93 -0.36 0.51 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -33.74 383.08 -8.43 -42.17 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.76 Total: 14.18 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.04 Total: 4.53 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.55 Total: -58.38 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.16 Total: -23.74 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.74 -8.43 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284031152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.962 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds