Wall clock time and date at job start Tue Mar 31 2020 18:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34486 * 126.83628 * 2 1 4 4 N 1.36451 * 108.85894 * 179.97438 * 3 2 1 5 5 H 0.96996 * 124.85083 * 180.02562 * 4 3 2 6 6 C 1.34660 * 110.29554 * 359.72762 * 4 3 2 7 7 C 1.36772 * 108.39692 * 0.43996 * 6 4 3 8 8 C 1.47267 * 126.94285 * 179.83422 * 7 6 4 9 9 O 1.21627 * 120.00056 * 188.25541 * 8 7 6 10 10 N 1.34777 * 119.99637 * 8.26439 * 8 7 6 11 11 C 1.47426 * 125.65063 * 358.66690 * 10 8 7 12 12 C 1.54907 * 104.83279 * 155.83834 * 11 10 8 13 13 H 1.09007 * 111.00588 * 278.93509 * 12 11 10 14 14 N 1.46900 * 111.00733 * 155.11887 * 12 11 10 15 15 C 1.46895 * 110.99893 * 89.57958 * 14 12 11 16 16 C 1.50697 * 109.47327 * 180.02562 * 15 14 12 17 17 O 1.21296 * 119.99972 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00399 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00447 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99337 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00481 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99513 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00206 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47206 * 90.00070 * 23 21 19 25 25 H 1.48494 * 109.47373 * 210.00162 * 23 21 19 26 26 H 1.48507 * 109.47335 * 330.00226 * 23 21 19 27 27 C 1.55161 * 101.61840 * 37.02399 * 12 11 10 28 28 C 1.47024 * 125.64697 * 178.62497 * 10 8 7 29 29 H 1.09004 * 109.88178 * 300.51158 * 28 10 8 30 30 C 1.53003 * 109.88186 * 61.67257 * 28 10 8 31 31 H 1.09004 * 109.46995 * 270.04595 * 1 2 3 32 32 H 1.09002 * 109.47217 * 30.04564 * 1 2 3 33 33 H 1.09000 * 109.47527 * 150.04647 * 1 2 3 34 34 H 1.08000 * 125.57133 * 359.93502 * 3 2 1 35 35 H 1.08004 * 125.80175 * 180.30744 * 6 4 3 36 36 H 1.08995 * 110.36811 * 36.99348 * 11 10 8 37 37 H 1.09006 * 110.45414 * 274.71969 * 11 10 8 38 38 H 1.00894 * 111.00011 * 325.62606 * 14 12 11 39 39 H 1.09000 * 109.47391 * 300.00401 * 15 14 12 40 40 H 1.09001 * 109.47427 * 59.99770 * 15 14 12 41 41 H 0.97001 * 120.00009 * 0.02562 * 18 16 15 42 42 H 0.97004 * 119.99395 * 179.97438 * 22 21 19 43 43 H 1.08997 * 110.71767 * 82.84686 * 27 12 11 44 44 H 1.09003 * 110.71861 * 206.11594 * 27 12 11 45 45 H 1.08997 * 109.46722 * 58.54852 * 30 28 10 46 46 H 1.08998 * 109.46789 * 178.55001 * 30 28 10 47 47 H 1.08996 * 109.46916 * 298.54865 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 0.0006 5 1 4.3840 1.2413 0.0011 6 6 3.6656 -0.6903 0.0070 7 6 2.3863 -1.1741 0.0007 8 6 1.9748 -2.5881 0.0010 9 8 0.8048 -2.8810 -0.1562 10 7 2.8947 -3.5575 0.1756 11 6 4.3434 -3.3463 0.3487 12 6 4.8400 -4.6037 1.1049 13 1 4.6461 -4.5186 2.1742 14 7 6.2665 -4.8432 0.8487 15 6 7.1028 -4.1424 1.8322 16 6 8.5562 -4.4105 1.5377 17 8 8.8650 -5.1157 0.6003 18 7 9.5130 -3.8659 2.3151 19 6 10.8352 -4.1103 2.0475 20 1 11.1100 -4.7396 1.2138 21 6 11.8217 -3.5493 2.8493 22 7 11.4871 -2.7849 3.8645 23 14 13.6231 -3.8828 2.4850 24 1 14.1398 -2.8477 1.5541 25 1 14.3997 -3.8428 3.7501 26 1 13.7621 -5.2233 1.8611 27 6 3.9661 -5.7166 0.4683 28 6 2.6194 -5.0009 0.2258 29 1 1.9315 -5.2189 1.0428 30 6 2.0168 -5.4622 -1.1027 31 1 -0.3633 0.0008 1.0277 32 1 -0.3634 0.8896 -0.5145 33 1 -0.3634 -0.8904 -0.5131 34 1 1.9868 2.1058 -0.0010 35 1 4.5664 -1.2861 0.0135 36 1 4.5280 -2.4499 0.9407 37 1 4.8354 -3.2677 -0.6209 38 1 6.5146 -4.5768 -0.0922 39 1 6.9122 -3.0708 1.7734 40 1 6.8628 -4.4996 2.8337 41 1 9.2662 -3.3017 3.0645 42 1 12.1758 -2.3936 4.4245 43 1 4.3982 -6.0549 -0.4735 44 1 3.8414 -6.5512 1.1584 45 1 2.7084 -5.2346 -1.9138 46 1 1.8393 -6.5371 -1.0674 47 1 1.0734 -4.9437 -1.2733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284031152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:07 Heat of formation + Delta-G solvation = -38.071250 kcal Electronic energy + Delta-G solvation = -28631.404728 eV Core-core repulsion = 24621.018763 eV Total energy + Delta-G solvation = -4010.385965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24909 -40.89303 -40.05379 -38.63622 -36.20897 -35.55197 -33.42719 -33.30467 -33.22950 -31.09904 -30.27931 -27.91197 -27.57323 -26.86176 -25.78976 -24.36405 -22.14952 -21.98194 -21.13840 -20.59982 -19.88398 -19.72764 -18.67735 -17.88676 -17.66096 -17.10780 -16.73990 -16.30734 -15.99631 -15.92324 -15.54412 -15.32130 -15.06874 -14.90766 -14.65369 -14.33040 -14.11515 -14.00588 -13.89245 -13.58110 -13.54722 -13.46458 -13.28779 -13.26802 -13.17342 -12.91075 -12.76046 -12.39666 -12.39091 -12.13605 -12.10884 -11.90077 -11.65538 -11.48059 -10.83371 -10.30839 -9.98550 -9.82039 -9.50992 -9.29509 -9.19817 -8.44854 -5.92703 0.75486 1.39136 1.43818 1.47882 1.55640 1.92794 2.09249 2.30548 2.44000 2.51861 2.90395 3.23325 3.41211 3.56869 3.72099 3.85841 4.01085 4.06246 4.13533 4.20352 4.28103 4.36624 4.40414 4.44117 4.48757 4.58279 4.63073 4.66531 4.73044 4.77893 4.86162 4.91895 4.97604 5.07979 5.13313 5.19263 5.31502 5.32785 5.43741 5.50396 5.82600 5.91068 5.95670 6.11492 6.38538 6.56705 6.62981 6.64725 7.15777 7.28778 7.60144 8.15464 8.72361 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.002519 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.359078 B =11114.779111 C =12728.014713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.149 4.149 3 C -0.009 4.009 4 N -0.536 5.536 5 H 0.436 0.564 6 C 0.045 3.955 7 C -0.263 4.263 8 C 0.597 3.403 9 O -0.582 6.582 10 N -0.608 5.608 11 C 0.060 3.940 12 C 0.083 3.917 13 H 0.104 0.896 14 N -0.662 5.662 15 C 0.063 3.937 16 C 0.439 3.561 17 O -0.623 6.623 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.989 3.011 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.108 4.108 28 C 0.135 3.865 29 H 0.071 0.929 30 C -0.155 4.155 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.202 0.798 35 H 0.198 0.802 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.350 0.650 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.054 0.946 46 H 0.081 0.919 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.913 8.081 -4.622 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.155 4.155 3 C -0.137 4.137 4 N -0.131 5.131 5 H 0.276 0.724 6 C -0.092 4.092 7 C -0.273 4.273 8 C 0.390 3.610 9 O -0.464 6.464 10 N -0.341 5.341 11 C -0.065 4.065 12 C -0.028 4.028 13 H 0.122 0.878 14 N -0.294 5.294 15 C -0.069 4.069 16 C 0.226 3.774 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.813 3.187 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.146 4.146 28 C 0.032 3.968 29 H 0.089 0.911 30 C -0.213 4.213 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.218 0.782 35 H 0.215 0.785 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.170 0.830 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.126 7.131 -4.852 20.073 hybrid contribution 1.044 1.126 -0.024 1.535 sum -17.082 8.256 -4.876 19.589 Atomic orbital electron populations 1.20112 0.89524 1.02289 1.01602 1.20808 0.96112 0.91044 1.07581 1.22046 0.82261 0.99978 1.09440 1.41664 1.08956 1.06484 1.55993 0.72392 1.22914 0.98742 0.84750 1.02843 1.20405 0.94308 0.92063 1.20566 1.17432 0.83943 0.84410 0.75248 1.90685 1.18935 1.83951 1.52795 1.48310 1.07532 1.06393 1.71901 1.23629 0.80688 1.00985 1.01172 1.22810 0.86720 0.92859 1.00447 0.87828 1.60080 1.01373 1.61068 1.06874 1.21624 0.88711 0.98389 0.98193 1.20902 0.88658 0.83392 0.84426 1.90511 1.84030 1.42916 1.33499 1.41927 1.05400 1.45085 1.28682 1.19637 0.82733 1.29783 1.13876 0.90366 1.25970 1.04051 0.95929 0.95217 1.69664 1.35948 1.32860 1.17639 0.84985 0.77209 0.78647 0.77883 1.19612 1.19791 1.19903 1.22712 0.91670 0.97659 1.02586 1.21662 0.97591 0.79269 0.98323 0.91059 1.22057 1.00694 1.02097 0.96413 0.92195 0.90196 0.93066 0.78158 0.78528 0.88435 0.90293 0.82991 0.90634 0.87659 0.76918 0.91384 0.89913 0.88573 0.92721 0.89983 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.06 71.23 0.72 -0.90 16 2 C -0.15 -3.22 6.35 -18.52 -0.12 -3.34 16 3 C -0.01 -0.13 11.82 83.12 0.98 0.85 16 4 N -0.54 -6.55 5.90 -194.55 -1.15 -7.70 16 5 H 0.44 2.37 8.96 -92.71 -0.83 1.54 16 6 C 0.05 0.76 10.25 83.92 0.86 1.62 16 7 C -0.26 -6.24 6.23 -19.04 -0.12 -6.36 16 8 C 0.60 16.66 7.64 86.62 0.66 17.32 16 9 O -0.58 -19.95 14.29 -4.12 -0.06 -20.01 16 10 N -0.61 -13.77 3.06 -791.86 -2.43 -16.20 16 11 C 0.06 1.07 4.90 86.85 0.43 1.50 16 12 C 0.08 1.61 3.34 46.31 0.15 1.77 16 13 H 0.10 1.90 7.87 -2.38 -0.02 1.88 16 14 N -0.66 -17.26 6.02 -488.41 -2.94 -20.19 16 15 C 0.06 1.81 6.05 85.56 0.52 2.33 16 16 C 0.44 19.07 7.82 87.66 0.69 19.76 16 17 O -0.62 -32.33 15.78 -3.08 -0.05 -32.38 16 18 N -0.57 -27.51 5.29 -306.98 -1.62 -29.13 16 19 C -0.33 -17.97 9.68 84.04 0.81 -17.16 16 20 H 0.08 4.57 7.16 -2.91 -0.02 4.54 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 22 N -0.92 -47.79 13.05 21.66 0.28 -47.51 16 23 Si 0.99 41.55 29.55 68.60 2.03 43.58 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C -0.11 -2.02 6.18 31.82 0.20 -1.82 16 28 C 0.13 2.83 3.47 45.38 0.16 2.99 16 29 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 30 C -0.15 -3.28 9.11 71.98 0.66 -2.62 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.34 6.74 -2.39 -0.02 1.32 16 34 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.20 2.54 4.74 -2.91 -0.01 2.53 16 36 H 0.10 1.49 5.31 -2.39 -0.01 1.47 16 37 H 0.08 1.34 7.67 -2.38 -0.02 1.32 16 38 H 0.35 9.51 7.94 -89.70 -0.71 8.80 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.11 2.76 8.09 -2.39 -0.02 2.74 16 41 H 0.40 17.95 7.90 -92.71 -0.73 17.22 16 42 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 43 H 0.08 1.62 7.85 -2.39 -0.02 1.60 16 44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.05 1.21 6.84 -2.39 -0.02 1.19 16 Total: -1.00 -75.05 383.08 -0.12 -75.17 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -1.24 Total: 38.58 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 7.06 Total: 15.79 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -7.85 Total: -120.73 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -0.11 Total: -52.39 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -75.05 -0.12 -75.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284031152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.094 kcal (2) G-P(sol) polarization free energy of solvation -75.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds