Wall clock time and date at job start Tue Mar 31 2020 18:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34485 * 126.83248 * 2 1 4 4 N 1.36448 * 108.85465 * 180.02562 * 3 2 1 5 5 H 0.97006 * 124.85248 * 180.02562 * 4 3 2 6 6 C 1.34658 * 110.30100 * 359.97438 * 4 3 2 7 7 C 1.36771 * 108.39295 * 0.02562 * 6 4 3 8 8 C 1.47257 * 126.93761 * 179.73272 * 7 6 4 9 9 O 1.21633 * 119.99954 * 147.23999 * 8 7 6 10 10 N 1.34782 * 120.00694 * 327.24197 * 8 7 6 11 11 C 1.47422 * 125.64239 * 3.89407 * 10 8 7 12 12 C 1.54694 * 104.94180 * 204.07669 * 11 10 8 13 13 H 1.09000 * 110.84976 * 81.33506 * 12 11 10 14 14 N 1.46896 * 111.10356 * 205.10896 * 12 11 10 15 15 C 1.46901 * 111.00236 * 267.36518 * 14 12 11 16 16 C 1.50700 * 109.47263 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00021 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99776 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99694 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99871 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99738 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99861 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46978 * 89.99087 * 23 21 19 25 25 H 1.48490 * 109.47046 * 209.99581 * 23 21 19 26 26 H 1.48499 * 109.46747 * 329.99206 * 23 21 19 27 27 C 1.55158 * 101.67494 * 323.27661 * 12 11 10 28 28 C 1.47018 * 125.65248 * 184.20867 * 10 8 7 29 29 H 1.09006 * 109.87603 * 298.31682 * 28 10 8 30 30 C 1.52998 * 109.88391 * 59.32642 * 28 10 8 31 31 H 1.09002 * 109.46965 * 269.97628 * 1 2 3 32 32 H 1.08996 * 109.47011 * 29.98104 * 1 2 3 33 33 H 1.09000 * 109.47344 * 149.98039 * 1 2 3 34 34 H 1.07999 * 125.57517 * 0.04546 * 3 2 1 35 35 H 1.07995 * 125.80357 * 180.02562 * 6 4 3 36 36 H 1.09005 * 110.36880 * 323.00666 * 11 10 8 37 37 H 1.08994 * 110.36894 * 85.32992 * 11 10 8 38 38 H 1.00897 * 111.00100 * 31.32075 * 14 12 11 39 39 H 1.08998 * 109.47203 * 300.00380 * 15 14 12 40 40 H 1.09001 * 109.46572 * 60.00170 * 15 14 12 41 41 H 0.96997 * 120.00192 * 0.02562 * 18 16 15 42 42 H 0.96997 * 119.99658 * 180.02562 * 22 21 19 43 43 H 1.08995 * 110.72171 * 276.97526 * 27 12 11 44 44 H 1.09003 * 110.71752 * 153.69632 * 27 12 11 45 45 H 1.09000 * 109.47002 * 58.55099 * 30 28 10 46 46 H 1.09002 * 109.46960 * 178.54674 * 30 28 10 47 47 H 1.09003 * 109.47450 * 298.54891 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3841 1.2413 -0.0003 6 6 3.6656 -0.6902 -0.0004 7 6 2.3864 -1.1740 -0.0003 8 6 1.9750 -2.5880 -0.0055 9 8 0.9555 -2.9269 0.5648 10 7 2.7281 -3.5067 -0.6422 11 6 4.0218 -3.2501 -1.3009 12 6 4.1611 -4.3718 -2.3570 13 1 3.5989 -4.1281 -3.2584 14 7 5.5726 -4.6280 -2.6734 15 6 6.0066 -3.8298 -3.8277 16 6 7.4560 -4.1191 -4.1221 17 8 8.0674 -4.9118 -3.4373 18 7 8.0731 -3.4962 -5.1456 19 6 9.3918 -3.7590 -5.4131 20 1 9.9360 -4.4654 -4.8038 21 6 10.0279 -3.1172 -6.4686 22 7 11.2918 -3.3694 -6.7253 23 14 9.0864 -1.8958 -7.5229 24 1 9.2184 -0.5356 -6.9419 25 1 9.6400 -1.9015 -8.9008 26 1 7.6525 -2.2796 -7.5640 27 6 3.5290 -5.5801 -1.6168 28 6 2.3924 -4.9293 -0.8005 29 1 2.3200 -5.4041 0.1780 30 6 1.0644 -5.0706 -1.5469 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3634 -0.8898 -0.5141 34 1 1.9868 2.1059 0.0007 35 1 4.5664 -1.2860 -0.0004 36 1 4.0144 -2.2728 -1.7837 37 1 4.8345 -3.3105 -0.5772 38 1 6.1602 -4.4538 -1.8719 39 1 5.4012 -4.0883 -4.6965 40 1 5.8856 -2.7702 -3.6028 41 1 7.5844 -2.8614 -5.6926 42 1 11.7359 -2.9211 -7.4619 43 1 4.2568 -6.0517 -0.9566 44 1 3.1281 -6.3016 -2.3288 45 1 1.1416 -4.5871 -2.5208 46 1 0.8349 -6.1275 -1.6832 47 1 0.2704 -4.5981 -0.9686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284031153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:11 Heat of formation + Delta-G solvation = -14.155060 kcal Electronic energy + Delta-G solvation = -28720.203554 eV Core-core repulsion = 24710.854672 eV Total energy + Delta-G solvation = -4009.348881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52024 -40.07178 -38.56181 -37.60947 -34.89347 -33.90008 -32.73203 -32.41455 -31.72678 -30.04013 -29.60733 -26.82928 -26.52542 -25.98384 -24.16326 -23.47313 -21.53303 -21.00831 -19.76934 -19.42907 -18.90943 -18.44489 -18.15047 -16.80706 -16.28558 -16.03957 -15.56174 -15.12708 -14.92156 -14.85655 -14.32164 -14.11722 -14.01334 -13.65828 -13.48708 -13.45090 -13.24103 -13.03754 -13.01278 -12.90410 -12.62289 -12.56660 -12.32554 -12.13002 -12.09982 -11.85164 -11.62926 -11.49077 -11.21922 -11.05274 -10.75658 -10.64616 -10.02849 -9.94667 -9.63185 -8.94451 -8.77018 -8.64799 -8.55260 -8.27208 -8.21798 -6.36387 -3.88143 1.60825 2.14299 2.73235 2.97697 2.98069 3.01186 3.10637 3.26934 3.66863 3.94225 4.05085 4.36583 4.39157 4.57515 4.72877 4.80061 4.82146 4.88675 4.92960 5.10632 5.10698 5.15254 5.21559 5.27932 5.37983 5.49493 5.50948 5.56029 5.59355 5.62064 5.72064 5.77825 5.82167 5.84292 5.94896 5.96577 5.97271 6.15005 6.31780 6.52514 6.63500 6.97601 7.13683 7.39664 7.45874 7.52298 8.08708 8.18265 8.53680 8.89355 9.36575 9.76030 10.76649 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.002740 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.692831 B =10214.740558 C =11666.880249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.116 4.116 3 C -0.023 4.023 4 N -0.550 5.550 5 H 0.419 0.581 6 C 0.044 3.956 7 C -0.223 4.223 8 C 0.607 3.393 9 O -0.540 6.540 10 N -0.609 5.609 11 C 0.066 3.934 12 C 0.078 3.922 13 H 0.093 0.907 14 N -0.651 5.651 15 C 0.046 3.954 16 C 0.449 3.551 17 O -0.564 6.564 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.116 4.116 28 C 0.136 3.864 29 H 0.076 0.924 30 C -0.162 4.162 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.353 0.647 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.374 8.665 10.931 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C -0.151 4.151 4 N -0.144 5.144 5 H 0.255 0.745 6 C -0.092 4.092 7 C -0.233 4.233 8 C 0.397 3.603 9 O -0.418 6.418 10 N -0.344 5.344 11 C -0.059 4.059 12 C -0.034 4.034 13 H 0.111 0.889 14 N -0.283 5.283 15 C -0.087 4.087 16 C 0.234 3.766 17 O -0.446 6.446 18 N -0.229 5.229 19 C -0.434 4.434 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.155 4.155 28 C 0.032 3.968 29 H 0.094 0.906 30 C -0.220 4.220 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.186 0.814 35 H 0.189 0.811 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.174 0.826 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.372 7.574 11.227 24.463 hybrid contribution 0.084 2.255 -0.666 2.353 sum -20.287 9.829 10.561 24.894 Atomic orbital electron populations 1.20104 0.89407 1.01943 1.02030 1.20490 0.95471 0.90276 1.05972 1.21572 0.82448 0.99190 1.11858 1.41528 1.08376 1.06723 1.57756 0.74471 1.22090 0.98614 0.83811 1.04709 1.20270 0.92856 0.92527 1.17686 1.17068 0.82340 0.83535 0.77346 1.90749 1.25500 1.81083 1.44460 1.48323 1.21519 1.09153 1.55377 1.23289 0.85962 1.00957 0.95717 1.22761 0.90655 0.93150 0.96835 0.88905 1.60110 1.01019 1.58113 1.09076 1.21789 0.96267 0.95426 0.95172 1.19674 0.87862 0.85211 0.83824 1.90575 1.66563 1.36908 1.50555 1.42210 1.11998 1.39868 1.28827 1.19431 0.84374 1.25054 1.14589 0.86249 1.25046 0.95727 0.98044 0.97319 1.69621 1.09740 1.42442 1.30200 0.86676 0.79811 0.81833 0.81095 1.19705 1.20125 1.19444 1.22737 0.96355 0.97417 0.98950 1.21587 0.95245 0.80632 0.99296 0.90630 1.22137 0.97303 1.02071 1.00481 0.91557 0.92239 0.91514 0.81399 0.81076 0.90316 0.91190 0.82566 0.89264 0.93679 0.79699 0.91568 0.89771 0.89396 0.92556 0.91622 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.02 36.01 0.36 -0.38 16 2 C -0.12 -1.21 6.35 -102.54 -0.65 -1.86 16 3 C -0.02 -0.18 11.82 -16.82 -0.20 -0.38 16 4 N -0.55 -3.77 5.90 -12.85 -0.08 -3.85 16 5 H 0.42 1.57 8.96 -40.82 -0.37 1.20 16 6 C 0.04 0.38 9.97 -16.84 -0.17 0.22 16 7 C -0.22 -2.56 5.85 -103.35 -0.60 -3.17 16 8 C 0.61 8.02 7.49 -12.59 -0.09 7.92 16 9 O -0.54 -8.68 15.53 5.25 0.08 -8.60 16 10 N -0.61 -6.79 3.08 -164.47 -0.51 -7.30 16 11 C 0.07 0.63 4.94 -2.65 -0.01 0.62 16 12 C 0.08 0.81 3.37 -65.68 -0.22 0.59 16 13 H 0.09 0.95 7.83 -51.93 -0.41 0.54 16 14 N -0.65 -8.80 6.04 -105.85 -0.64 -9.44 16 15 C 0.05 0.68 6.03 -4.98 -0.03 0.65 16 16 C 0.45 9.57 7.82 -10.99 -0.09 9.49 16 17 O -0.56 -14.45 15.78 5.55 0.09 -14.36 16 18 N -0.59 -13.41 5.09 -10.96 -0.06 -13.46 16 19 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 20 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.20 13.96 55.50 0.77 -24.42 16 23 Si 0.88 18.75 27.74 -169.99 -4.71 14.04 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 27 C -0.12 -1.13 6.20 -24.89 -0.15 -1.29 16 28 C 0.14 1.41 3.47 -66.95 -0.23 1.18 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 C -0.16 -1.62 9.07 37.16 0.34 -1.29 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 34 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.17 1.20 6.38 -52.49 -0.33 0.87 16 36 H 0.08 0.71 6.56 -51.93 -0.34 0.37 16 37 H 0.07 0.62 7.31 -51.93 -0.38 0.24 16 38 H 0.35 4.89 7.89 -39.29 -0.31 4.58 16 39 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.37 7.35 5.76 -40.82 -0.24 7.11 16 42 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 0.81 7.83 -51.93 -0.41 0.40 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.82 6.86 -51.93 -0.36 0.47 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -35.31 384.03 -8.17 -43.48 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -6.90 Total: 13.36 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.00 Total: 4.77 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.50 Total: -58.48 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.71 Total: 14.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.31 -8.17 -43.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284031153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.321 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds