Wall clock time and date at job start Tue Mar 31 2020 18:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34485 * 126.83248 * 2 1 4 4 N 1.36448 * 108.85465 * 180.02562 * 3 2 1 5 5 H 0.97006 * 124.85248 * 180.02562 * 4 3 2 6 6 C 1.34658 * 110.30100 * 359.97438 * 4 3 2 7 7 C 1.36771 * 108.39295 * 0.02562 * 6 4 3 8 8 C 1.47257 * 126.93761 * 179.73272 * 7 6 4 9 9 O 1.21633 * 119.99954 * 147.23999 * 8 7 6 10 10 N 1.34782 * 120.00694 * 327.24197 * 8 7 6 11 11 C 1.47422 * 125.64239 * 3.89407 * 10 8 7 12 12 C 1.54694 * 104.94180 * 204.07669 * 11 10 8 13 13 H 1.09000 * 110.84976 * 81.33506 * 12 11 10 14 14 N 1.46896 * 111.10356 * 205.10896 * 12 11 10 15 15 C 1.46901 * 111.00236 * 267.36518 * 14 12 11 16 16 C 1.50700 * 109.47263 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00021 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99776 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99694 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99871 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99738 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99861 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46978 * 89.99087 * 23 21 19 25 25 H 1.48490 * 109.47046 * 209.99581 * 23 21 19 26 26 H 1.48499 * 109.46747 * 329.99206 * 23 21 19 27 27 C 1.55158 * 101.67494 * 323.27661 * 12 11 10 28 28 C 1.47018 * 125.65248 * 184.20867 * 10 8 7 29 29 H 1.09006 * 109.87603 * 298.31682 * 28 10 8 30 30 C 1.52998 * 109.88391 * 59.32642 * 28 10 8 31 31 H 1.09002 * 109.46965 * 269.97628 * 1 2 3 32 32 H 1.08996 * 109.47011 * 29.98104 * 1 2 3 33 33 H 1.09000 * 109.47344 * 149.98039 * 1 2 3 34 34 H 1.07999 * 125.57517 * 0.04546 * 3 2 1 35 35 H 1.07995 * 125.80357 * 180.02562 * 6 4 3 36 36 H 1.09005 * 110.36880 * 323.00666 * 11 10 8 37 37 H 1.08994 * 110.36894 * 85.32992 * 11 10 8 38 38 H 1.00897 * 111.00100 * 31.32075 * 14 12 11 39 39 H 1.08998 * 109.47203 * 300.00380 * 15 14 12 40 40 H 1.09001 * 109.46572 * 60.00170 * 15 14 12 41 41 H 0.96997 * 120.00192 * 0.02562 * 18 16 15 42 42 H 0.96997 * 119.99658 * 180.02562 * 22 21 19 43 43 H 1.08995 * 110.72171 * 276.97526 * 27 12 11 44 44 H 1.09003 * 110.71752 * 153.69632 * 27 12 11 45 45 H 1.09000 * 109.47002 * 58.55099 * 30 28 10 46 46 H 1.09002 * 109.46960 * 178.54674 * 30 28 10 47 47 H 1.09003 * 109.47450 * 298.54891 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3841 1.2413 -0.0003 6 6 3.6656 -0.6902 -0.0004 7 6 2.3864 -1.1740 -0.0003 8 6 1.9750 -2.5880 -0.0055 9 8 0.9555 -2.9269 0.5648 10 7 2.7281 -3.5067 -0.6422 11 6 4.0218 -3.2501 -1.3009 12 6 4.1611 -4.3718 -2.3570 13 1 3.5989 -4.1281 -3.2584 14 7 5.5726 -4.6280 -2.6734 15 6 6.0066 -3.8298 -3.8277 16 6 7.4560 -4.1191 -4.1221 17 8 8.0674 -4.9118 -3.4373 18 7 8.0731 -3.4962 -5.1456 19 6 9.3918 -3.7590 -5.4131 20 1 9.9360 -4.4654 -4.8038 21 6 10.0279 -3.1172 -6.4686 22 7 11.2918 -3.3694 -6.7253 23 14 9.0864 -1.8958 -7.5229 24 1 9.2184 -0.5356 -6.9419 25 1 9.6400 -1.9015 -8.9008 26 1 7.6525 -2.2796 -7.5640 27 6 3.5290 -5.5801 -1.6168 28 6 2.3924 -4.9293 -0.8005 29 1 2.3200 -5.4041 0.1780 30 6 1.0644 -5.0706 -1.5469 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3634 -0.8898 -0.5141 34 1 1.9868 2.1059 0.0007 35 1 4.5664 -1.2860 -0.0004 36 1 4.0144 -2.2728 -1.7837 37 1 4.8345 -3.3105 -0.5772 38 1 6.1602 -4.4538 -1.8719 39 1 5.4012 -4.0883 -4.6965 40 1 5.8856 -2.7702 -3.6028 41 1 7.5844 -2.8614 -5.6926 42 1 11.7359 -2.9211 -7.4619 43 1 4.2568 -6.0517 -0.9566 44 1 3.1281 -6.3016 -2.3288 45 1 1.1416 -4.5871 -2.5208 46 1 0.8349 -6.1275 -1.6832 47 1 0.2704 -4.5981 -0.9686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284031153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:11 Heat of formation + Delta-G solvation = -41.806530 kcal Electronic energy + Delta-G solvation = -28721.402611 eV Core-core repulsion = 24710.854672 eV Total energy + Delta-G solvation = -4010.547939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.19912 -40.93339 -40.19478 -38.66269 -36.23393 -35.58316 -33.71891 -33.44186 -33.20338 -31.06775 -30.32857 -27.99852 -27.48989 -26.80834 -25.61255 -24.50073 -22.35646 -21.75328 -21.26615 -20.50398 -20.22043 -19.65241 -18.84109 -17.93985 -17.36063 -17.23152 -16.82127 -16.52705 -16.10182 -15.80832 -15.49092 -15.07355 -15.05243 -14.73770 -14.56270 -14.43009 -14.23718 -14.12135 -14.08764 -13.98320 -13.64310 -13.58854 -13.42762 -13.23757 -13.05020 -12.96310 -12.82177 -12.39251 -12.34764 -12.28916 -11.98903 -11.90788 -11.57989 -11.48308 -10.91931 -10.40049 -10.22314 -9.78451 -9.53236 -9.30269 -9.17085 -8.38931 -5.99711 0.84911 1.32466 1.37195 1.46667 1.48828 1.90529 1.99629 2.25124 2.35033 2.47880 2.74124 3.18071 3.32370 3.56588 3.68631 3.95177 3.98608 4.09963 4.11760 4.19558 4.24148 4.32149 4.40340 4.44719 4.45365 4.57921 4.63653 4.69487 4.72580 4.78764 4.88500 4.90776 4.98582 5.08971 5.11755 5.16782 5.27322 5.33718 5.49899 5.55437 5.81709 5.93163 5.97735 6.05684 6.36674 6.55853 6.62206 6.67061 6.91279 7.26183 7.43112 7.99896 8.78728 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.002740 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.692831 B =10214.740558 C =11666.880249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.153 4.153 3 C -0.006 4.006 4 N -0.536 5.536 5 H 0.436 0.564 6 C 0.054 3.946 7 C -0.260 4.260 8 C 0.600 3.400 9 O -0.583 6.583 10 N -0.607 5.607 11 C 0.070 3.930 12 C 0.084 3.916 13 H 0.104 0.896 14 N -0.666 5.666 15 C 0.060 3.940 16 C 0.450 3.550 17 O -0.614 6.614 18 N -0.591 5.591 19 C -0.326 4.326 20 H 0.055 0.945 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.256 1.256 25 H -0.279 1.279 26 H -0.230 1.230 27 C -0.108 4.108 28 C 0.134 3.866 29 H 0.066 0.934 30 C -0.155 4.155 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.201 0.799 35 H 0.189 0.811 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.350 0.650 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.390 0.610 42 H 0.278 0.722 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.112 11.494 9.719 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.159 4.159 3 C -0.134 4.134 4 N -0.131 5.131 5 H 0.276 0.724 6 C -0.084 4.084 7 C -0.270 4.270 8 C 0.392 3.608 9 O -0.464 6.464 10 N -0.341 5.341 11 C -0.055 4.055 12 C -0.027 4.027 13 H 0.122 0.878 14 N -0.298 5.298 15 C -0.072 4.072 16 C 0.238 3.762 17 O -0.498 6.498 18 N -0.233 5.233 19 C -0.456 4.456 20 H 0.073 0.927 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.180 1.180 25 H -0.204 1.204 26 H -0.153 1.153 27 C -0.147 4.147 28 C 0.030 3.970 29 H 0.084 0.916 30 C -0.213 4.213 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.218 0.782 35 H 0.206 0.794 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.171 0.829 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.225 0.775 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.110 10.414 10.018 26.413 hybrid contribution 0.684 1.279 -0.161 1.459 sum -21.426 11.693 9.856 26.324 Atomic orbital electron populations 1.20035 0.89615 1.01811 1.01531 1.20756 0.95961 0.91044 1.08160 1.22004 0.82228 0.99908 1.09279 1.41584 1.08918 1.06347 1.56256 0.72380 1.22253 0.98105 0.84685 1.03319 1.20351 0.94492 0.91863 1.20315 1.17457 0.81907 0.84570 0.76884 1.90714 1.27398 1.81880 1.46446 1.48352 1.21837 1.09099 1.54774 1.23328 0.85284 1.01203 0.95658 1.22729 0.88821 0.93570 0.97532 0.87760 1.60082 1.02404 1.58540 1.08737 1.21721 0.90979 0.97814 0.96657 1.20988 0.90302 0.83057 0.81893 1.90560 1.68608 1.38734 1.51901 1.42034 1.10385 1.40937 1.29966 1.18999 0.86661 1.25036 1.14888 0.92663 1.26118 0.96684 1.00189 0.98470 1.69810 1.12269 1.44306 1.31309 0.85377 0.79910 0.78546 0.77764 1.17998 1.20439 1.15291 1.22675 0.95799 0.97385 0.98828 1.21623 0.95763 0.80536 0.99048 0.91624 1.22065 0.96263 1.02941 0.99991 0.92303 0.89921 0.93984 0.78186 0.79411 0.89054 0.90337 0.82949 0.86794 0.89817 0.77455 0.91234 0.90210 0.88488 0.92197 0.89945 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.02 71.24 0.71 -0.66 16 2 C -0.15 -3.01 6.35 -18.52 -0.12 -3.13 16 3 C -0.01 -0.07 11.82 83.12 0.98 0.91 16 4 N -0.54 -5.46 5.90 -194.56 -1.15 -6.60 16 5 H 0.44 1.45 8.96 -92.70 -0.83 0.62 16 6 C 0.05 0.80 9.97 83.92 0.84 1.64 16 7 C -0.26 -5.69 5.85 -19.04 -0.11 -5.80 16 8 C 0.60 15.86 7.49 86.61 0.65 16.51 16 9 O -0.58 -19.60 15.53 -4.14 -0.06 -19.67 16 10 N -0.61 -12.91 3.08 -792.49 -2.44 -15.36 16 11 C 0.07 1.15 4.94 86.78 0.43 1.58 16 12 C 0.08 1.50 3.37 46.23 0.16 1.66 16 13 H 0.10 1.69 7.83 -2.39 -0.02 1.67 16 14 N -0.67 -16.17 6.04 -488.80 -2.95 -19.12 16 15 C 0.06 1.55 6.03 85.56 0.52 2.07 16 16 C 0.45 18.60 7.82 87.66 0.69 19.28 16 17 O -0.61 -31.97 15.78 -3.06 -0.05 -32.02 16 18 N -0.59 -26.09 5.09 -306.99 -1.56 -27.65 16 19 C -0.33 -18.42 10.16 84.04 0.85 -17.56 16 20 H 0.06 3.75 7.39 -2.91 -0.02 3.72 16 21 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 22 N -0.94 -55.26 13.96 21.66 0.30 -54.96 16 23 Si 0.96 37.04 27.74 68.60 1.90 38.94 16 24 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 25 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 26 H -0.23 -7.30 6.52 99.48 0.65 -6.65 16 27 C -0.11 -1.91 6.20 31.78 0.20 -1.72 16 28 C 0.13 2.67 3.47 45.34 0.16 2.83 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 30 C -0.15 -3.01 9.07 71.98 0.65 -2.35 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.97 7.90 -2.39 -0.02 0.95 16 34 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.19 2.03 6.38 -2.91 -0.02 2.01 16 36 H 0.09 1.30 6.56 -2.38 -0.02 1.29 16 37 H 0.08 1.18 7.31 -2.39 -0.02 1.16 16 38 H 0.35 8.99 7.89 -89.70 -0.71 8.29 16 39 H 0.11 2.48 8.09 -2.39 -0.02 2.46 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.39 14.00 5.76 -92.71 -0.53 13.46 16 42 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.10 1.56 7.83 -2.39 -0.02 1.54 16 45 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.04 1.09 6.86 -2.39 -0.02 1.08 16 Total: -1.00 -84.23 384.03 -0.05 -84.28 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -1.11 Total: 37.30 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 7.07 Total: 14.86 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -7.80 Total: -123.69 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -0.11 Total: -51.69 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 1.90 Total: 38.94 kcal Total: -84.23 -0.05 -84.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284031153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.475 kcal (2) G-P(sol) polarization free energy of solvation -84.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds