Wall clock time and date at job start Tue Mar 31 2020 18:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34483 * 126.83495 * 2 1 4 4 N 1.36453 * 108.85647 * 180.26556 * 3 2 1 5 5 H 0.96997 * 124.85055 * 179.69127 * 4 3 2 6 6 C 1.34662 * 110.29696 * 359.70419 * 4 3 2 7 7 C 1.36770 * 108.39720 * 0.02562 * 6 4 3 8 8 C 1.47267 * 126.94262 * 180.02562 * 7 6 4 9 9 O 1.21628 * 119.99730 * 187.94735 * 8 7 6 10 10 N 1.34775 * 119.99934 * 7.94009 * 8 7 6 11 11 C 1.46494 * 119.99822 * 6.23116 * 10 8 7 12 12 C 1.46496 * 119.99926 * 186.49696 * 10 8 7 13 13 C 1.53007 * 109.47248 * 269.73235 * 12 10 8 14 14 H 1.09001 * 112.73982 * 284.22797 * 13 12 10 15 15 C 1.53512 * 113.47625 * 153.38313 * 13 12 10 16 16 C 1.53517 * 83.57185 * 219.20556 * 15 13 12 17 17 N 1.47476 * 113.47733 * 54.99512 * 13 12 10 18 18 C 1.46899 * 111.00217 * 253.47187 * 17 13 12 19 19 C 1.50697 * 109.46947 * 190.00476 * 18 17 13 20 20 O 1.21292 * 120.00271 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99821 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99773 * 179.97438 * 21 19 18 23 23 H 1.07997 * 119.99870 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99601 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00163 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99775 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46850 * 90.00712 * 26 24 22 28 28 H 1.48500 * 109.47045 * 210.00093 * 26 24 22 29 29 H 1.48494 * 109.47390 * 330.00380 * 26 24 22 30 30 H 1.09000 * 109.47233 * 270.20403 * 1 2 3 31 31 H 1.08997 * 109.47016 * 30.20993 * 1 2 3 32 32 H 1.09001 * 109.47360 * 150.20846 * 1 2 3 33 33 H 1.08000 * 125.57556 * 359.97068 * 3 2 1 34 34 H 1.08001 * 125.80239 * 180.02562 * 6 4 3 35 35 H 1.09007 * 109.46849 * 276.17648 * 11 10 8 36 36 H 1.09004 * 109.47900 * 36.17751 * 11 10 8 37 37 H 1.08998 * 109.47387 * 156.18355 * 11 10 8 38 38 H 1.09000 * 109.47046 * 29.72877 * 12 10 8 39 39 H 1.08995 * 109.47208 * 149.72562 * 12 10 8 40 40 H 1.08997 * 114.16628 * 332.85004 * 15 13 12 41 41 H 1.08994 * 114.17145 * 105.56109 * 15 13 12 42 42 H 1.09001 * 113.47624 * 271.25837 * 16 15 13 43 43 H 1.08995 * 113.52958 * 140.79710 * 16 15 13 44 44 H 1.08994 * 109.47070 * 310.00251 * 18 17 13 45 45 H 1.08997 * 109.46770 * 69.99927 * 18 17 13 46 46 H 0.96993 * 119.99523 * 359.97438 * 21 19 18 47 47 H 0.96998 * 119.99963 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0060 5 1 4.3840 1.2412 -0.0115 6 6 3.6656 -0.6903 -0.0034 7 6 2.3864 -1.1741 0.0038 8 6 1.9749 -2.5881 0.0093 9 8 0.8026 -2.8809 -0.1301 10 7 2.8973 -3.5578 0.1687 11 6 4.2862 -3.2046 0.4724 12 6 2.5122 -4.9646 0.0325 13 6 2.0838 -5.5106 1.3961 14 1 2.9292 -5.7095 2.0548 15 6 1.0913 -6.6780 1.3032 16 6 0.4383 -5.9931 2.5120 17 7 1.0141 -4.7217 2.0351 18 6 1.5409 -3.9297 3.1545 19 6 0.3952 -3.3341 3.9315 20 8 -0.7477 -3.5479 3.5864 21 7 0.6407 -2.5629 5.0093 22 6 -0.4016 -2.0207 5.7158 23 1 -1.4193 -2.2118 5.4089 24 6 -0.1485 -1.2261 6.8272 25 7 1.0898 -0.9940 7.2008 26 14 -1.5687 -0.4866 7.7895 27 1 -1.9805 -1.4254 8.8639 28 1 -1.1400 0.8002 8.3941 29 1 -2.7143 -0.2469 6.8756 30 1 -0.3634 0.0037 1.0276 31 1 -0.3633 0.8881 -0.5171 32 1 -0.3634 -0.8918 -0.5106 33 1 1.9868 2.1059 -0.0004 34 1 4.5664 -1.2862 -0.0065 35 1 4.8134 -2.9747 -0.4536 36 1 4.3049 -2.3333 1.1271 37 1 4.7740 -4.0431 0.9695 38 1 1.6821 -5.0478 -0.6692 39 1 3.3606 -5.5393 -0.3388 40 1 0.4784 -6.6719 0.4019 41 1 1.5267 -7.6525 1.5238 42 1 0.8441 -6.3216 3.4688 43 1 -0.6512 -6.0127 2.4872 44 1 2.1287 -4.5727 3.8096 45 1 2.1727 -3.1300 2.7681 46 1 1.5547 -2.3917 5.2850 47 1 1.2664 -0.4390 7.9765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316607652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:33 Heat of formation + Delta-G solvation = 41.102329 kcal Electronic energy + Delta-G solvation = -30342.837197 eV Core-core repulsion = 26335.884456 eV Total energy + Delta-G solvation = -4006.952741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.16755 -40.16066 -38.49351 -37.50010 -35.20071 -33.76968 -32.19406 -31.25986 -30.89258 -30.05245 -28.11041 -26.84302 -26.08379 -25.61845 -23.55892 -23.54523 -21.57626 -20.05220 -19.35526 -19.09263 -18.58069 -17.77230 -17.60051 -16.17442 -15.99689 -15.76369 -15.48175 -15.29004 -14.55493 -14.42057 -14.10758 -13.97746 -13.68489 -13.64586 -13.43947 -13.07237 -12.85626 -12.66144 -12.47291 -12.32433 -12.15259 -12.10197 -11.74186 -11.57020 -11.42174 -11.34546 -11.14436 -11.06863 -10.95523 -10.61738 -10.32783 -10.25936 -10.10680 -9.38238 -9.26427 -8.62692 -8.43230 -8.18235 -8.10367 -8.00540 -7.83061 -6.31075 -3.70599 1.96639 2.59992 3.13660 3.24326 3.31604 3.38102 3.39183 3.94360 4.06215 4.20278 4.39367 4.69466 4.85316 4.93385 4.99086 5.08665 5.18058 5.19220 5.25368 5.34804 5.37107 5.40517 5.54755 5.58287 5.65641 5.69551 5.73807 5.84512 5.90664 5.99217 6.02283 6.08737 6.24389 6.26764 6.40367 6.44208 6.49554 6.54379 6.75819 6.93151 7.00851 7.05878 7.51311 7.51795 7.65343 7.76418 8.18434 8.75291 8.79703 9.30513 9.67717 10.21603 10.87364 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009121 B = 0.004704 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.269524 B = 5950.409241 C = 7854.071057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.100 4.100 3 C -0.033 4.033 4 N -0.553 5.553 5 H 0.414 0.586 6 C 0.018 3.982 7 C -0.219 4.219 8 C 0.585 3.415 9 O -0.498 6.498 10 N -0.619 5.619 11 C 0.069 3.931 12 C 0.142 3.858 13 C 0.001 3.999 14 H 0.070 0.930 15 C -0.137 4.137 16 C 0.009 3.991 17 N -0.409 5.409 18 C 0.017 3.983 19 C 0.451 3.549 20 O -0.571 6.571 21 N -0.570 5.570 22 C -0.291 4.291 23 H 0.101 0.899 24 C 0.020 3.980 25 N -0.907 5.907 26 Si 0.927 3.073 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.270 1.270 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.166 0.834 34 H 0.184 0.816 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.389 0.611 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.274 -2.375 -15.361 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.160 4.160 4 N -0.148 5.148 5 H 0.250 0.750 6 C -0.117 4.117 7 C -0.230 4.230 8 C 0.374 3.626 9 O -0.371 6.371 10 N -0.354 5.354 11 C -0.075 4.075 12 C 0.019 3.981 13 C -0.111 4.111 14 H 0.088 0.912 15 C -0.176 4.176 16 C -0.120 4.120 17 N -0.131 5.131 18 C -0.116 4.116 19 C 0.237 3.763 20 O -0.453 6.453 21 N -0.208 5.208 22 C -0.421 4.421 23 H 0.119 0.881 24 C -0.181 4.181 25 N -0.549 5.549 26 Si 0.755 3.245 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.183 0.817 34 H 0.201 0.799 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.222 0.778 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.573 -1.932 -15.891 19.753 hybrid contribution 1.206 0.478 1.621 2.076 sum 12.779 -1.454 -14.270 19.210 Atomic orbital electron populations 1.20223 0.89246 1.02216 1.02656 1.20595 0.95749 0.90331 1.03965 1.21553 0.82532 0.99167 1.12734 1.41526 1.08092 1.06778 1.58376 0.75050 1.22879 0.99268 0.83738 1.05805 1.20462 0.92535 0.93191 1.16778 1.17333 0.85067 0.83621 0.76607 1.90822 1.16413 1.82706 1.47145 1.47497 1.08691 1.06095 1.73164 1.22196 0.83070 1.02145 1.00048 1.21357 1.00226 0.80379 0.96166 1.23919 0.95142 0.94434 0.97569 0.91213 1.23173 0.97991 0.96226 1.00163 1.23590 1.02484 0.90200 0.95758 1.68984 1.14974 1.10335 1.18787 1.22407 0.96961 0.98836 0.93355 1.19687 0.89808 0.83884 0.82971 1.90529 1.22360 1.63253 1.69160 1.41843 1.09500 1.44365 1.25084 1.19683 0.89372 1.25988 1.07056 0.88080 1.25207 0.97402 0.97789 0.97687 1.69618 1.18486 1.39620 1.27187 0.85895 0.80938 0.78158 0.79538 1.20536 1.21036 1.19421 0.91255 0.92802 0.90156 0.81720 0.79923 0.92906 0.90418 0.91293 0.89452 0.90953 0.88863 0.91180 0.92304 0.89285 0.93711 0.90008 0.77797 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 10.05 36.00 0.36 -1.08 16 2 C -0.10 -1.60 6.35 -102.54 -0.65 -2.25 16 3 C -0.03 -0.40 11.82 -16.82 -0.20 -0.60 16 4 N -0.55 -5.39 5.90 -12.84 -0.08 -5.46 16 5 H 0.41 2.39 8.96 -40.82 -0.37 2.02 16 6 C 0.02 0.20 9.83 -16.84 -0.17 0.03 16 7 C -0.22 -3.40 6.10 -103.35 -0.63 -4.03 16 8 C 0.58 10.01 6.87 -12.59 -0.09 9.92 16 9 O -0.50 -10.61 14.03 5.25 0.07 -10.53 16 10 N -0.62 -8.11 2.74 -182.91 -0.50 -8.61 16 11 C 0.07 0.60 8.66 59.84 0.52 1.12 16 12 C 0.14 1.73 5.53 -4.04 -0.02 1.71 16 13 C 0.00 0.01 3.37 -71.44 -0.24 -0.23 16 14 H 0.07 0.86 7.77 -51.93 -0.40 0.46 16 15 C -0.14 -1.75 8.00 -26.20 -0.21 -1.96 16 16 C 0.01 0.15 6.71 -7.55 -0.05 0.10 16 17 N -0.41 -7.67 4.41 -237.95 -1.05 -8.72 16 18 C 0.02 0.34 5.31 -4.98 -0.03 0.31 16 19 C 0.45 11.71 7.62 -10.98 -0.08 11.63 16 20 O -0.57 -16.90 15.34 5.55 0.09 -16.81 16 21 N -0.57 -15.49 5.29 -10.96 -0.06 -15.55 16 22 C -0.29 -8.56 9.68 -14.93 -0.14 -8.71 16 23 H 0.10 3.13 7.16 -52.49 -0.38 2.76 16 24 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 25 N -0.91 -25.59 13.05 55.50 0.72 -24.87 16 26 Si 0.93 21.96 29.55 -169.99 -5.02 16.94 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 29 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.50 6.75 -51.93 -0.35 1.15 16 33 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.18 1.36 4.45 -52.49 -0.23 1.12 16 35 H 0.05 0.34 7.30 -51.93 -0.38 -0.04 16 36 H 0.08 0.71 5.46 -51.93 -0.28 0.43 16 37 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 38 H 0.09 1.23 7.24 -51.93 -0.38 0.85 16 39 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 40 H 0.09 1.19 7.94 -51.93 -0.41 0.78 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 43 H 0.09 1.73 8.13 -51.93 -0.42 1.31 16 44 H 0.04 0.82 7.56 -51.93 -0.39 0.42 16 45 H 0.08 1.63 7.70 -51.93 -0.40 1.23 16 46 H 0.39 10.15 7.90 -40.82 -0.32 9.83 16 47 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -38.49 381.96 -8.57 -47.07 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.78 Total: 14.38 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -1.73 Total: 6.42 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.96 Total: -63.21 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: 0.16 Total: -27.34 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.49 -8.57 -47.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316607652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.167 kcal (2) G-P(sol) polarization free energy of solvation -38.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds