Wall clock time and date at job start Tue Mar 31 2020 18:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34483 * 126.83495 * 2 1 4 4 N 1.36453 * 108.85647 * 180.26556 * 3 2 1 5 5 H 0.96997 * 124.85055 * 179.69127 * 4 3 2 6 6 C 1.34662 * 110.29696 * 359.70419 * 4 3 2 7 7 C 1.36770 * 108.39720 * 0.02562 * 6 4 3 8 8 C 1.47267 * 126.94262 * 180.02562 * 7 6 4 9 9 O 1.21628 * 119.99730 * 187.94735 * 8 7 6 10 10 N 1.34775 * 119.99934 * 7.94009 * 8 7 6 11 11 C 1.46494 * 119.99822 * 6.23116 * 10 8 7 12 12 C 1.46496 * 119.99926 * 186.49696 * 10 8 7 13 13 C 1.53007 * 109.47248 * 269.73235 * 12 10 8 14 14 H 1.09001 * 112.73982 * 284.22797 * 13 12 10 15 15 C 1.53512 * 113.47625 * 153.38313 * 13 12 10 16 16 C 1.53517 * 83.57185 * 219.20556 * 15 13 12 17 17 N 1.47476 * 113.47733 * 54.99512 * 13 12 10 18 18 C 1.46899 * 111.00217 * 253.47187 * 17 13 12 19 19 C 1.50697 * 109.46947 * 190.00476 * 18 17 13 20 20 O 1.21292 * 120.00271 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99821 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99773 * 179.97438 * 21 19 18 23 23 H 1.07997 * 119.99870 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99601 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00163 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99775 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46850 * 90.00712 * 26 24 22 28 28 H 1.48500 * 109.47045 * 210.00093 * 26 24 22 29 29 H 1.48494 * 109.47390 * 330.00380 * 26 24 22 30 30 H 1.09000 * 109.47233 * 270.20403 * 1 2 3 31 31 H 1.08997 * 109.47016 * 30.20993 * 1 2 3 32 32 H 1.09001 * 109.47360 * 150.20846 * 1 2 3 33 33 H 1.08000 * 125.57556 * 359.97068 * 3 2 1 34 34 H 1.08001 * 125.80239 * 180.02562 * 6 4 3 35 35 H 1.09007 * 109.46849 * 276.17648 * 11 10 8 36 36 H 1.09004 * 109.47900 * 36.17751 * 11 10 8 37 37 H 1.08998 * 109.47387 * 156.18355 * 11 10 8 38 38 H 1.09000 * 109.47046 * 29.72877 * 12 10 8 39 39 H 1.08995 * 109.47208 * 149.72562 * 12 10 8 40 40 H 1.08997 * 114.16628 * 332.85004 * 15 13 12 41 41 H 1.08994 * 114.17145 * 105.56109 * 15 13 12 42 42 H 1.09001 * 113.47624 * 271.25837 * 16 15 13 43 43 H 1.08995 * 113.52958 * 140.79710 * 16 15 13 44 44 H 1.08994 * 109.47070 * 310.00251 * 18 17 13 45 45 H 1.08997 * 109.46770 * 69.99927 * 18 17 13 46 46 H 0.96993 * 119.99523 * 359.97438 * 21 19 18 47 47 H 0.96998 * 119.99963 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0060 5 1 4.3840 1.2412 -0.0115 6 6 3.6656 -0.6903 -0.0034 7 6 2.3864 -1.1741 0.0038 8 6 1.9749 -2.5881 0.0093 9 8 0.8026 -2.8809 -0.1301 10 7 2.8973 -3.5578 0.1687 11 6 4.2862 -3.2046 0.4724 12 6 2.5122 -4.9646 0.0325 13 6 2.0838 -5.5106 1.3961 14 1 2.9292 -5.7095 2.0548 15 6 1.0913 -6.6780 1.3032 16 6 0.4383 -5.9931 2.5120 17 7 1.0141 -4.7217 2.0351 18 6 1.5409 -3.9297 3.1545 19 6 0.3952 -3.3341 3.9315 20 8 -0.7477 -3.5479 3.5864 21 7 0.6407 -2.5629 5.0093 22 6 -0.4016 -2.0207 5.7158 23 1 -1.4193 -2.2118 5.4089 24 6 -0.1485 -1.2261 6.8272 25 7 1.0898 -0.9940 7.2008 26 14 -1.5687 -0.4866 7.7895 27 1 -1.9805 -1.4254 8.8639 28 1 -1.1400 0.8002 8.3941 29 1 -2.7143 -0.2469 6.8756 30 1 -0.3634 0.0037 1.0276 31 1 -0.3633 0.8881 -0.5171 32 1 -0.3634 -0.8918 -0.5106 33 1 1.9868 2.1059 -0.0004 34 1 4.5664 -1.2862 -0.0065 35 1 4.8134 -2.9747 -0.4536 36 1 4.3049 -2.3333 1.1271 37 1 4.7740 -4.0431 0.9695 38 1 1.6821 -5.0478 -0.6692 39 1 3.3606 -5.5393 -0.3388 40 1 0.4784 -6.6719 0.4019 41 1 1.5267 -7.6525 1.5238 42 1 0.8441 -6.3216 3.4688 43 1 -0.6512 -6.0127 2.4872 44 1 2.1287 -4.5727 3.8096 45 1 2.1727 -3.1300 2.7681 46 1 1.5547 -2.3917 5.2850 47 1 1.2664 -0.4390 7.9765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316607652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:32 Heat of formation + Delta-G solvation = 10.525266 kcal Electronic energy + Delta-G solvation = -30344.163118 eV Core-core repulsion = 26335.884456 eV Total energy + Delta-G solvation = -4008.278662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15102 -41.44675 -39.88836 -39.29721 -36.31927 -35.95079 -33.35206 -33.29618 -32.24593 -31.33280 -29.12041 -27.85279 -27.52908 -27.13541 -25.33284 -24.69380 -22.58437 -21.17060 -20.97525 -20.50810 -19.93862 -19.63937 -18.54431 -17.78340 -17.32606 -16.92706 -16.82400 -16.62612 -16.38080 -15.87927 -15.61292 -15.45037 -14.92598 -14.90413 -14.73899 -14.31693 -14.03380 -13.93017 -13.75666 -13.65608 -13.59138 -13.56028 -13.31739 -12.98230 -12.82356 -12.67303 -12.48391 -12.44739 -12.27310 -12.16501 -12.12033 -11.88262 -11.55972 -11.43857 -10.52109 -10.36495 -10.03218 -9.69801 -9.50024 -9.18981 -9.11989 -8.48977 -5.97475 0.97486 1.34128 1.36573 1.50412 1.53031 2.03118 2.20044 2.27285 2.55328 2.79752 2.94995 3.16776 3.36168 3.62091 3.89527 3.99824 4.05236 4.20702 4.25644 4.28111 4.29595 4.36199 4.40321 4.48467 4.51952 4.53520 4.60675 4.72341 4.77905 4.83920 4.87070 4.94655 4.95845 5.00342 5.05908 5.13833 5.30134 5.35177 5.37199 5.52491 5.84026 5.93044 5.93394 6.02916 6.23165 6.58970 6.72146 6.78891 7.10871 7.52585 7.66268 8.11021 8.68953 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009121 B = 0.004704 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.269524 B = 5950.409241 C = 7854.071057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.158 4.158 3 C -0.015 4.015 4 N -0.534 5.534 5 H 0.438 0.562 6 C 0.052 3.948 7 C -0.269 4.269 8 C 0.574 3.426 9 O -0.563 6.563 10 N -0.615 5.615 11 C 0.057 3.943 12 C 0.140 3.860 13 C 0.008 3.992 14 H 0.097 0.903 15 C -0.111 4.111 16 C -0.004 4.004 17 N -0.447 5.447 18 C 0.038 3.962 19 C 0.442 3.558 20 O -0.617 6.617 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.071 0.929 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.991 3.009 27 H -0.268 1.268 28 H -0.265 1.265 29 H -0.278 1.278 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.193 0.807 34 H 0.227 0.773 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.394 0.606 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.656 -2.163 -15.407 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.165 4.165 3 C -0.144 4.144 4 N -0.130 5.130 5 H 0.278 0.722 6 C -0.085 4.085 7 C -0.279 4.279 8 C 0.364 3.636 9 O -0.441 6.441 10 N -0.348 5.348 11 C -0.084 4.084 12 C 0.017 3.983 13 C -0.102 4.102 14 H 0.115 0.885 15 C -0.149 4.149 16 C -0.133 4.133 17 N -0.170 5.170 18 C -0.094 4.094 19 C 0.229 3.771 20 O -0.503 6.503 21 N -0.212 5.212 22 C -0.462 4.462 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.561 5.561 26 Si 0.815 3.185 27 H -0.193 1.193 28 H -0.190 1.190 29 H -0.203 1.203 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.210 0.790 34 H 0.242 0.758 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.141 0.859 40 H 0.105 0.895 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.227 0.773 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.074 -1.712 -15.927 22.693 hybrid contribution -0.100 0.437 1.624 1.684 sum 15.975 -1.275 -14.304 21.481 Atomic orbital electron populations 1.20006 0.91362 1.01937 0.99987 1.20753 0.95294 0.92594 1.07812 1.21832 0.83041 0.99381 1.10105 1.41571 1.08118 1.06862 1.56467 0.72179 1.23378 0.98831 0.84229 1.02052 1.20607 0.94526 0.92574 1.20230 1.17773 0.84868 0.85016 0.75913 1.90785 1.19149 1.83740 1.50470 1.47557 1.09900 1.05668 1.71683 1.22524 0.80691 1.03252 1.01937 1.21482 1.01339 0.80610 0.94827 1.24053 0.94823 0.93237 0.98098 0.88480 1.23063 0.96768 0.97685 0.97415 1.23637 1.00434 0.91035 0.98184 1.69016 1.18076 1.11485 1.18440 1.22176 0.94287 0.99324 0.93594 1.20789 0.90941 0.82877 0.82476 1.90492 1.24935 1.64667 1.70203 1.41887 1.09171 1.44647 1.25493 1.19595 0.88915 1.28663 1.09052 0.91084 1.26002 1.00254 0.97115 0.97658 1.69667 1.19739 1.39239 1.27432 0.84963 0.77461 0.78126 0.77975 1.19291 1.18966 1.20298 0.95157 0.90111 0.93312 0.79000 0.75754 0.89579 0.90811 0.88633 0.92199 0.85945 0.89468 0.87169 0.91799 0.93347 0.91187 0.89716 0.77277 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.82 10.05 71.24 0.72 -2.10 16 2 C -0.16 -5.24 6.35 -18.51 -0.12 -5.36 16 3 C -0.02 -0.35 11.82 83.11 0.98 0.63 16 4 N -0.53 -8.61 5.90 -194.55 -1.15 -9.76 16 5 H 0.44 3.05 8.96 -92.71 -0.83 2.22 16 6 C 0.05 0.99 9.83 83.91 0.83 1.81 16 7 C -0.27 -8.38 6.10 -19.04 -0.12 -8.49 16 8 C 0.57 20.21 6.87 86.62 0.60 20.81 16 9 O -0.56 -26.09 14.03 -4.12 -0.06 -26.15 16 10 N -0.61 -15.00 2.74 -850.85 -2.33 -17.33 16 11 C 0.06 0.75 8.66 127.77 1.11 1.86 16 12 C 0.14 3.13 5.53 86.38 0.48 3.60 16 13 C 0.01 0.20 3.37 42.19 0.14 0.35 16 14 H 0.10 1.96 7.77 -2.39 -0.02 1.94 16 15 C -0.11 -2.68 8.00 30.94 0.25 -2.43 16 16 C 0.00 -0.13 6.71 83.57 0.56 0.43 16 17 N -0.45 -17.23 4.41 -906.74 -4.00 -21.23 16 18 C 0.04 1.57 5.31 85.56 0.45 2.02 16 19 C 0.44 24.20 7.62 87.66 0.67 24.87 16 20 O -0.62 -39.45 15.34 -3.07 -0.05 -39.50 16 21 N -0.57 -32.55 5.29 -306.98 -1.62 -34.17 16 22 C -0.33 -20.46 9.68 84.04 0.81 -19.65 16 23 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 25 N -0.92 -51.59 13.05 21.66 0.28 -51.30 16 26 Si 0.99 45.35 29.55 68.60 2.03 47.38 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.05 2.07 6.75 -2.39 -0.02 2.05 16 33 H 0.19 3.21 8.06 -2.91 -0.02 3.18 16 34 H 0.23 2.17 4.45 -2.91 -0.01 2.16 16 35 H 0.09 0.60 7.30 -2.38 -0.02 0.58 16 36 H 0.07 1.05 5.46 -2.39 -0.01 1.03 16 37 H 0.10 0.80 8.03 -2.39 -0.02 0.78 16 38 H 0.06 1.69 7.24 -2.39 -0.02 1.67 16 39 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 40 H 0.09 2.22 7.94 -2.39 -0.02 2.20 16 41 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 2.14 7.70 -2.39 -0.02 2.13 16 43 H 0.05 2.05 8.13 -2.39 -0.02 2.03 16 44 H 0.07 2.48 7.56 -2.39 -0.02 2.46 16 45 H 0.08 3.40 7.70 -2.39 -0.02 3.38 16 46 H 0.39 21.07 7.90 -92.71 -0.73 20.34 16 47 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -94.67 381.96 0.39 -94.29 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -0.54 Total: 39.58 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 7.82 Total: 18.20 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -8.82 Total: -133.80 kcal Atomic # 8 Polarization: -65.55 SS G_CDS: -0.10 Total: -65.65 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -94.67 0.39 -94.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316607652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.812 kcal (2) G-P(sol) polarization free energy of solvation -94.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds