Wall clock time and date at job start Tue Mar 31 2020 18:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34485 * 126.83654 * 2 1 4 4 N 1.36449 * 108.85890 * 180.25238 * 3 2 1 5 5 H 0.97003 * 124.85226 * 179.73095 * 4 3 2 6 6 C 1.34654 * 110.29858 * 359.75394 * 4 3 2 7 7 C 1.36775 * 108.39472 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94263 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00418 * 186.37345 * 8 7 6 10 10 N 1.34782 * 120.00060 * 6.36894 * 8 7 6 11 11 C 1.47429 * 125.64623 * 5.34853 * 10 8 7 12 12 C 1.54906 * 104.83171 * 155.82895 * 11 10 8 13 13 C 1.55161 * 101.58123 * 37.01218 * 12 11 10 14 14 C 1.47015 * 125.64997 * 185.29897 * 10 8 7 15 15 H 1.09002 * 109.88395 * 300.66855 * 14 10 8 16 16 C 1.52994 * 109.88315 * 61.68542 * 14 10 8 17 17 N 1.46898 * 109.47329 * 184.15278 * 16 14 10 18 18 C 1.46902 * 111.00137 * 185.09693 * 17 16 14 19 19 C 1.50703 * 109.47316 * 179.97438 * 18 17 16 20 20 O 1.21291 * 119.99817 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99740 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99832 * 180.02562 * 21 19 18 23 23 H 1.08007 * 120.00020 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00296 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99764 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47232 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47085 * 120.00555 * 26 24 22 29 29 H 1.48506 * 109.47143 * 240.00275 * 26 24 22 30 30 H 1.09000 * 109.47222 * 270.14299 * 1 2 3 31 31 H 1.09004 * 109.47061 * 30.14393 * 1 2 3 32 32 H 1.09007 * 109.47301 * 150.14339 * 1 2 3 33 33 H 1.08003 * 125.56975 * 359.97438 * 3 2 1 34 34 H 1.08000 * 125.80763 * 179.97438 * 6 4 3 35 35 H 1.09001 * 110.36335 * 274.66993 * 11 10 8 36 36 H 1.08999 * 110.36504 * 36.88192 * 11 10 8 37 37 H 1.09001 * 111.00280 * 155.08378 * 12 11 10 38 38 H 1.08998 * 111.00827 * 278.93219 * 12 11 10 39 39 H 1.08999 * 110.71797 * 206.13565 * 13 12 11 40 40 H 1.08993 * 110.72111 * 82.86161 * 13 12 11 41 41 H 1.09005 * 109.47286 * 304.15030 * 16 14 10 42 42 H 1.09000 * 109.47272 * 64.14793 * 16 14 10 43 43 H 1.00892 * 111.00461 * 61.14151 * 17 16 14 44 44 H 1.09002 * 109.47528 * 300.00021 * 18 17 16 45 45 H 1.09009 * 109.47247 * 59.99850 * 18 17 16 46 46 H 0.96999 * 120.00484 * 0.02562 * 21 19 18 47 47 H 0.97001 * 119.99622 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2413 -0.0106 6 6 3.6656 -0.6902 -0.0040 7 6 2.3863 -1.1740 0.0035 8 6 1.9748 -2.5880 0.0072 9 8 0.7992 -2.8796 -0.1030 10 7 2.9010 -3.5591 0.1326 11 6 4.3383 -3.3483 0.3843 12 6 4.8222 -4.6630 1.0453 13 6 3.9907 -5.7230 0.2756 14 6 2.6452 -5.0040 0.0422 15 1 1.9260 -5.3016 0.8053 16 6 2.1041 -5.3508 -1.3462 17 7 1.7584 -6.7777 -1.3947 18 6 1.3486 -7.1744 -2.7485 19 6 1.0030 -8.6412 -2.7592 20 8 1.0891 -9.2920 -1.7393 21 7 0.5973 -9.2295 -3.9018 22 6 0.2825 -10.5638 -3.9115 23 1 0.3591 -11.1434 -3.0033 24 6 -0.1363 -11.1704 -5.0894 25 7 -0.2301 -10.4651 -6.1943 26 14 -0.5647 -12.9886 -5.1026 27 1 -0.3769 -13.5513 -3.7413 28 1 -1.9800 -13.1607 -5.5180 29 1 0.3218 -13.6990 -6.0591 30 1 -0.3633 0.0026 1.0276 31 1 -0.3633 0.8887 -0.5161 32 1 -0.3634 -0.8913 -0.5116 33 1 1.9868 2.1059 -0.0004 34 1 4.5663 -1.2861 -0.0079 35 1 4.8667 -3.1784 -0.5539 36 1 4.4855 -2.5055 1.0597 37 1 5.8899 -4.8115 0.8840 38 1 4.5839 -4.6763 2.1089 39 1 3.8498 -6.6175 0.8824 40 1 4.4655 -5.9706 -0.6737 41 1 1.2145 -4.7543 -1.5488 42 1 2.8646 -5.1354 -2.0968 43 1 1.0413 -6.9991 -0.7204 44 1 0.4769 -6.5932 -3.0493 45 1 2.1667 -6.9891 -3.4447 46 1 0.5281 -8.7090 -4.7174 47 1 -0.5221 -10.8887 -7.0166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319130558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:44 Heat of formation + Delta-G solvation = -15.246097 kcal Electronic energy + Delta-G solvation = -28265.429850 eV Core-core repulsion = 24256.033657 eV Total energy + Delta-G solvation = -4009.396192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55642 -39.89888 -38.18315 -37.36899 -35.18130 -33.76649 -32.66694 -32.08470 -31.18401 -30.59569 -29.29558 -26.93514 -26.63008 -25.02646 -24.05899 -22.71453 -21.88013 -21.11402 -19.93431 -19.17659 -18.93440 -17.96197 -17.76643 -16.76746 -16.52309 -15.77424 -15.38992 -15.12366 -14.86775 -14.47068 -14.26858 -14.13574 -13.96188 -13.81814 -13.54274 -13.39192 -13.37855 -13.14584 -12.88920 -12.76211 -12.51041 -12.24432 -12.15505 -11.64037 -11.60118 -11.48854 -11.43148 -11.21081 -11.04631 -10.80386 -10.77963 -10.30052 -10.17048 -9.83498 -9.46214 -8.96899 -8.69289 -8.57553 -8.34719 -7.95178 -7.88612 -6.36081 -3.76640 1.51507 2.12691 2.75306 2.99762 3.20517 3.30530 3.38209 3.42503 3.98414 4.18501 4.32606 4.39451 4.49646 4.55481 4.71054 4.78216 4.85562 5.01737 5.07843 5.16163 5.22736 5.30078 5.31463 5.32838 5.48085 5.54041 5.60556 5.69186 5.70119 5.83867 5.89108 5.91659 5.97351 6.02612 6.08599 6.09677 6.25579 6.32496 6.41111 6.55877 6.60463 7.09231 7.28973 7.51104 7.60848 7.75923 8.12776 8.26593 8.67739 9.23851 9.61051 10.12681 10.81907 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002079 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.298000 B =13463.714330 C =14304.329206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.108 4.108 3 C -0.028 4.028 4 N -0.551 5.551 5 H 0.417 0.583 6 C 0.033 3.967 7 C -0.221 4.221 8 C 0.602 3.398 9 O -0.536 6.536 10 N -0.614 5.614 11 C 0.092 3.908 12 C -0.138 4.138 13 C -0.112 4.112 14 C 0.144 3.856 15 H 0.076 0.924 16 C 0.050 3.950 17 N -0.664 5.664 18 C 0.052 3.948 19 C 0.444 3.556 20 O -0.583 6.583 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.020 3.980 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.350 0.650 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.392 0.608 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.356 25.840 12.154 31.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.156 4.156 4 N -0.146 5.146 5 H 0.253 0.747 6 C -0.102 4.102 7 C -0.232 4.232 8 C 0.393 3.607 9 O -0.414 6.414 10 N -0.349 5.349 11 C -0.031 4.031 12 C -0.176 4.176 13 C -0.150 4.150 14 C 0.041 3.959 15 H 0.094 0.906 16 C -0.080 4.080 17 N -0.297 5.297 18 C -0.080 4.080 19 C 0.229 3.771 20 O -0.467 6.467 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.186 0.814 34 H 0.198 0.802 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.169 0.831 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.225 0.775 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.377 25.142 12.497 30.684 hybrid contribution -0.640 0.202 -0.814 1.054 sum 11.738 25.344 11.683 30.275 Atomic orbital electron populations 1.20221 0.89255 1.02861 1.01962 1.20580 0.95710 0.90275 1.04884 1.21594 0.82475 0.99217 1.12273 1.41546 1.08279 1.06763 1.57978 0.74696 1.22613 0.99154 0.83768 1.04699 1.20338 0.92736 0.92619 1.17517 1.17074 0.84373 0.83376 0.75883 1.90768 1.16927 1.83246 1.50412 1.48369 1.08068 1.06201 1.72242 1.22615 0.81742 0.98956 0.99807 1.22858 1.00427 0.94157 1.00141 1.22576 0.93300 0.97633 1.01512 1.21457 0.98148 0.78822 0.97461 0.90551 1.22246 1.00165 0.89268 0.96362 1.60008 1.48275 1.15231 1.06147 1.21647 0.99616 0.95497 0.91286 1.19813 0.84012 0.88458 0.84824 1.90514 1.57962 1.65233 1.32966 1.41872 1.58521 1.10337 1.09506 1.19755 1.41060 0.84846 0.96991 0.87872 1.25268 0.97580 1.00409 0.94850 1.69629 1.47812 1.36808 1.00169 0.85798 0.77907 0.82135 0.78481 1.19224 1.20813 1.20795 0.91879 0.92331 0.90052 0.81447 0.80197 0.91302 0.90281 0.89840 0.90651 0.89440 0.89941 0.94099 0.91277 0.83126 0.93854 0.89744 0.77465 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.03 36.00 0.36 -0.53 16 2 C -0.11 -1.14 6.35 -102.54 -0.65 -1.79 16 3 C -0.03 -0.20 11.82 -16.82 -0.20 -0.40 16 4 N -0.55 -2.98 5.90 -12.85 -0.08 -3.06 16 5 H 0.42 0.71 8.96 -40.82 -0.37 0.34 16 6 C 0.03 0.24 10.24 -16.84 -0.17 0.07 16 7 C -0.22 -2.49 6.22 -103.35 -0.64 -3.13 16 8 C 0.60 8.33 7.56 -12.59 -0.10 8.23 16 9 O -0.54 -9.39 14.48 5.25 0.08 -9.31 16 10 N -0.61 -7.05 3.06 -164.33 -0.50 -7.55 16 11 C 0.09 0.67 5.13 -2.53 -0.01 0.66 16 12 C -0.14 -0.99 7.08 -24.58 -0.17 -1.16 16 13 C -0.11 -1.16 6.27 -24.89 -0.16 -1.32 16 14 C 0.14 1.83 3.07 -66.96 -0.21 1.63 16 15 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.05 0.74 5.07 -3.83 -0.02 0.72 16 17 N -0.66 -11.56 5.88 -115.05 -0.68 -12.24 16 18 C 0.05 1.00 6.16 -4.97 -0.03 0.97 16 19 C 0.44 10.91 7.82 -10.99 -0.09 10.83 16 20 O -0.58 -16.27 15.78 5.55 0.09 -16.18 16 21 N -0.57 -14.86 5.29 -10.96 -0.06 -14.92 16 22 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 23 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 24 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 25 N -0.90 -25.19 13.05 55.50 0.72 -24.47 16 26 Si 0.93 21.53 29.55 -169.99 -5.02 16.50 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.06 6.76 -51.92 -0.35 0.71 16 33 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.18 0.81 4.79 -52.49 -0.25 0.55 16 35 H 0.07 0.42 7.79 -51.93 -0.40 0.01 16 36 H 0.08 0.44 5.88 -51.93 -0.31 0.14 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.90 7.78 -51.93 -0.40 0.50 16 41 H 0.04 0.69 6.92 -51.93 -0.36 0.33 16 42 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 43 H 0.35 6.43 8.49 -39.30 -0.33 6.10 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 46 H 0.39 9.89 7.90 -40.82 -0.32 9.57 16 47 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -36.29 384.29 -8.81 -45.10 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.83 Total: 13.76 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -2.33 Total: 6.58 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.59 Total: -62.23 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.16 Total: -25.49 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.29 -8.81 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319130558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.854 kcal (2) G-P(sol) polarization free energy of solvation -36.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds