Wall clock time and date at job start Tue Mar 31 2020 18:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34485 * 126.83654 * 2 1 4 4 N 1.36449 * 108.85890 * 180.25238 * 3 2 1 5 5 H 0.97003 * 124.85226 * 179.73095 * 4 3 2 6 6 C 1.34654 * 110.29858 * 359.75394 * 4 3 2 7 7 C 1.36775 * 108.39472 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94263 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00418 * 186.37345 * 8 7 6 10 10 N 1.34782 * 120.00060 * 6.36894 * 8 7 6 11 11 C 1.47429 * 125.64623 * 5.34853 * 10 8 7 12 12 C 1.54906 * 104.83171 * 155.82895 * 11 10 8 13 13 C 1.55161 * 101.58123 * 37.01218 * 12 11 10 14 14 C 1.47015 * 125.64997 * 185.29897 * 10 8 7 15 15 H 1.09002 * 109.88395 * 300.66855 * 14 10 8 16 16 C 1.52994 * 109.88315 * 61.68542 * 14 10 8 17 17 N 1.46898 * 109.47329 * 184.15278 * 16 14 10 18 18 C 1.46902 * 111.00137 * 185.09693 * 17 16 14 19 19 C 1.50703 * 109.47316 * 179.97438 * 18 17 16 20 20 O 1.21291 * 119.99817 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99740 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99832 * 180.02562 * 21 19 18 23 23 H 1.08007 * 120.00020 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00296 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99764 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47232 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47085 * 120.00555 * 26 24 22 29 29 H 1.48506 * 109.47143 * 240.00275 * 26 24 22 30 30 H 1.09000 * 109.47222 * 270.14299 * 1 2 3 31 31 H 1.09004 * 109.47061 * 30.14393 * 1 2 3 32 32 H 1.09007 * 109.47301 * 150.14339 * 1 2 3 33 33 H 1.08003 * 125.56975 * 359.97438 * 3 2 1 34 34 H 1.08000 * 125.80763 * 179.97438 * 6 4 3 35 35 H 1.09001 * 110.36335 * 274.66993 * 11 10 8 36 36 H 1.08999 * 110.36504 * 36.88192 * 11 10 8 37 37 H 1.09001 * 111.00280 * 155.08378 * 12 11 10 38 38 H 1.08998 * 111.00827 * 278.93219 * 12 11 10 39 39 H 1.08999 * 110.71797 * 206.13565 * 13 12 11 40 40 H 1.08993 * 110.72111 * 82.86161 * 13 12 11 41 41 H 1.09005 * 109.47286 * 304.15030 * 16 14 10 42 42 H 1.09000 * 109.47272 * 64.14793 * 16 14 10 43 43 H 1.00892 * 111.00461 * 61.14151 * 17 16 14 44 44 H 1.09002 * 109.47528 * 300.00021 * 18 17 16 45 45 H 1.09009 * 109.47247 * 59.99850 * 18 17 16 46 46 H 0.96999 * 120.00484 * 0.02562 * 21 19 18 47 47 H 0.97001 * 119.99622 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2413 -0.0106 6 6 3.6656 -0.6902 -0.0040 7 6 2.3863 -1.1740 0.0035 8 6 1.9748 -2.5880 0.0072 9 8 0.7992 -2.8796 -0.1030 10 7 2.9010 -3.5591 0.1326 11 6 4.3383 -3.3483 0.3843 12 6 4.8222 -4.6630 1.0453 13 6 3.9907 -5.7230 0.2756 14 6 2.6452 -5.0040 0.0422 15 1 1.9260 -5.3016 0.8053 16 6 2.1041 -5.3508 -1.3462 17 7 1.7584 -6.7777 -1.3947 18 6 1.3486 -7.1744 -2.7485 19 6 1.0030 -8.6412 -2.7592 20 8 1.0891 -9.2920 -1.7393 21 7 0.5973 -9.2295 -3.9018 22 6 0.2825 -10.5638 -3.9115 23 1 0.3591 -11.1434 -3.0033 24 6 -0.1363 -11.1704 -5.0894 25 7 -0.2301 -10.4651 -6.1943 26 14 -0.5647 -12.9886 -5.1026 27 1 -0.3769 -13.5513 -3.7413 28 1 -1.9800 -13.1607 -5.5180 29 1 0.3218 -13.6990 -6.0591 30 1 -0.3633 0.0026 1.0276 31 1 -0.3633 0.8887 -0.5161 32 1 -0.3634 -0.8913 -0.5116 33 1 1.9868 2.1059 -0.0004 34 1 4.5663 -1.2861 -0.0079 35 1 4.8667 -3.1784 -0.5539 36 1 4.4855 -2.5055 1.0597 37 1 5.8899 -4.8115 0.8840 38 1 4.5839 -4.6763 2.1089 39 1 3.8498 -6.6175 0.8824 40 1 4.4655 -5.9706 -0.6737 41 1 1.2145 -4.7543 -1.5488 42 1 2.8646 -5.1354 -2.0968 43 1 1.0413 -6.9991 -0.7204 44 1 0.4769 -6.5932 -3.0493 45 1 2.1667 -6.9891 -3.4447 46 1 0.5281 -8.7090 -4.7174 47 1 -0.5221 -10.8887 -7.0166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319130558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:43 Heat of formation + Delta-G solvation = -43.266210 kcal Electronic energy + Delta-G solvation = -28266.644893 eV Core-core repulsion = 24256.033657 eV Total energy + Delta-G solvation = -4010.611236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19528 -40.79055 -40.12443 -38.39921 -36.64312 -35.80485 -33.34059 -33.30462 -32.94672 -31.57136 -30.16540 -28.26931 -27.47355 -26.45579 -25.37529 -23.96714 -22.55342 -21.88431 -21.23423 -20.59709 -19.92526 -19.67373 -18.56816 -17.94098 -17.67445 -17.12102 -16.81449 -16.52658 -16.12214 -15.84669 -15.57351 -15.29302 -14.98249 -14.92237 -14.78855 -14.76043 -14.13243 -14.04197 -13.91249 -13.66036 -13.56414 -13.48588 -13.28277 -13.22701 -13.15133 -12.86336 -12.63404 -12.41701 -12.32970 -12.11334 -11.86743 -11.81879 -11.57532 -11.52779 -10.86905 -10.39910 -10.03612 -9.80014 -9.47236 -9.39568 -9.17355 -8.47855 -5.97066 0.79081 1.36185 1.41177 1.49538 1.56188 1.93414 2.01790 2.28868 2.47924 2.53735 2.95005 3.18657 3.47705 3.63656 3.69652 3.91426 3.95543 4.11059 4.20422 4.25092 4.29384 4.34366 4.39292 4.46554 4.49896 4.53201 4.60613 4.67887 4.73725 4.84940 4.87780 4.91748 5.05759 5.07148 5.14707 5.21319 5.32351 5.39359 5.40454 5.49238 5.79711 5.84090 5.97771 6.03772 6.24664 6.57630 6.63500 6.72354 7.10441 7.31414 7.53102 8.07980 8.69978 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002079 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.298000 B =13463.714330 C =14304.329206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.155 4.155 3 C -0.007 4.007 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.061 3.939 7 C -0.267 4.267 8 C 0.591 3.409 9 O -0.593 6.593 10 N -0.613 5.613 11 C 0.085 3.915 12 C -0.125 4.125 13 C -0.110 4.110 14 C 0.144 3.856 15 H 0.051 0.949 16 C 0.061 3.939 17 N -0.665 5.665 18 C 0.066 3.934 19 C 0.441 3.559 20 O -0.620 6.620 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.996 3.004 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.269 1.269 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.201 0.799 34 H 0.213 0.787 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.016 0.984 42 H 0.081 0.919 43 H 0.341 0.659 44 H 0.054 0.946 45 H 0.108 0.892 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.349 27.817 11.978 33.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.161 4.161 3 C -0.135 4.135 4 N -0.128 5.128 5 H 0.280 0.720 6 C -0.077 4.077 7 C -0.278 4.278 8 C 0.384 3.616 9 O -0.475 6.475 10 N -0.346 5.346 11 C -0.036 4.036 12 C -0.163 4.163 13 C -0.148 4.148 14 C 0.040 3.960 15 H 0.069 0.931 16 C -0.069 4.069 17 N -0.297 5.297 18 C -0.067 4.067 19 C 0.228 3.772 20 O -0.506 6.506 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.098 0.902 24 C -0.215 4.215 25 N -0.562 5.562 26 Si 0.820 3.180 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.194 1.194 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.217 0.783 34 H 0.229 0.771 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.034 0.966 42 H 0.100 0.900 43 H 0.159 0.841 44 H 0.072 0.928 45 H 0.126 0.874 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.443 27.176 12.309 33.594 hybrid contribution -1.546 -0.337 -0.747 1.750 sum 13.897 26.839 11.563 32.360 Atomic orbital electron populations 1.20101 0.90374 1.01941 1.01380 1.20791 0.95804 0.91630 1.07860 1.21956 0.82525 0.99663 1.09406 1.41595 1.08660 1.06511 1.55991 0.71980 1.22921 0.98507 0.84570 1.01695 1.20323 0.94916 0.91275 1.21264 1.17664 0.83964 0.84895 0.75098 1.90727 1.19347 1.84224 1.53228 1.48436 1.09796 1.05021 1.71333 1.22970 0.79031 0.99955 1.01613 1.22860 1.01440 0.92367 0.99644 1.22512 0.92383 0.98016 1.01860 1.21355 0.99027 0.80440 0.95182 0.93130 1.22209 0.99400 0.86992 0.98281 1.60055 1.47631 1.16988 1.05004 1.21524 1.00891 0.91506 0.92784 1.20706 0.82374 0.90427 0.83696 1.90483 1.59188 1.66813 1.34129 1.41933 1.58962 1.09925 1.10175 1.19729 1.43567 0.86069 0.96910 0.90186 1.26107 0.96597 1.04738 0.94053 1.69692 1.47400 1.38513 1.00619 0.84824 0.78208 0.76654 0.78345 1.19705 1.19645 1.19380 0.92413 0.90251 0.93813 0.78251 0.77053 0.88949 0.87838 0.86868 0.90500 0.90522 0.90094 0.96618 0.90019 0.84132 0.92777 0.87446 0.77027 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 10.03 71.23 0.71 -1.08 16 2 C -0.15 -3.21 6.35 -18.52 -0.12 -3.32 16 3 C -0.01 -0.08 11.82 83.12 0.98 0.90 16 4 N -0.53 -3.54 5.90 -194.55 -1.15 -4.69 16 5 H 0.44 -0.78 8.96 -92.71 -0.83 -1.61 16 6 C 0.06 0.68 10.24 83.92 0.86 1.54 16 7 C -0.27 -5.84 6.22 -19.04 -0.12 -5.96 16 8 C 0.59 17.03 7.56 86.61 0.66 17.69 16 9 O -0.59 -22.82 14.48 -4.12 -0.06 -22.88 16 10 N -0.61 -13.91 3.06 -792.07 -2.43 -16.33 16 11 C 0.09 0.98 5.13 86.85 0.45 1.43 16 12 C -0.13 -1.43 7.08 31.99 0.23 -1.21 16 13 C -0.11 -2.18 6.27 31.79 0.20 -1.98 16 14 C 0.14 3.77 3.07 45.34 0.14 3.91 16 15 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 16 C 0.06 1.87 5.07 86.30 0.44 2.31 16 17 N -0.67 -23.93 5.88 -517.92 -3.04 -26.97 16 18 C 0.07 2.53 6.16 85.56 0.53 3.06 16 19 C 0.44 22.30 7.82 87.66 0.69 22.99 16 20 O -0.62 -35.90 15.78 -3.06 -0.05 -35.95 16 21 N -0.57 -30.89 5.29 -306.98 -1.62 -32.52 16 22 C -0.33 -19.59 9.68 84.04 0.81 -18.78 16 23 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 24 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 25 N -0.92 -51.21 13.05 21.66 0.28 -50.92 16 26 Si 1.00 44.08 29.55 68.60 2.03 46.10 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.04 1.28 6.76 -2.38 -0.02 1.27 16 33 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.21 0.82 4.79 -2.91 -0.01 0.81 16 35 H 0.09 0.69 7.79 -2.39 -0.02 0.68 16 36 H 0.10 0.71 5.88 -2.39 -0.01 0.70 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 1.65 7.78 -2.39 -0.02 1.63 16 41 H 0.02 0.56 6.92 -2.38 -0.02 0.55 16 42 H 0.08 2.27 8.03 -2.39 -0.02 2.25 16 43 H 0.34 13.32 8.49 -89.70 -0.76 12.56 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.11 3.68 8.14 -2.38 -0.02 3.66 16 46 H 0.40 20.37 7.90 -92.71 -0.73 19.64 16 47 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -84.63 384.29 -0.41 -85.05 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -1.29 Total: 38.01 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 6.92 Total: 21.11 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -7.96 Total: -131.43 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -0.11 Total: -58.84 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -84.63 -0.41 -85.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319130558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.783 kcal (2) G-P(sol) polarization free energy of solvation -84.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds