Wall clock time and date at job start Tue Mar 31 2020 18:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34481 * 126.83665 * 2 1 4 4 N 1.36442 * 108.85990 * 180.02562 * 3 2 1 5 5 H 0.96996 * 124.84915 * 179.97438 * 4 3 2 6 6 C 1.34656 * 110.29876 * 359.72598 * 4 3 2 7 7 C 1.36770 * 108.39431 * 0.44219 * 6 4 3 8 8 C 1.47264 * 126.94310 * 179.83844 * 7 6 4 9 9 O 1.21624 * 120.00211 * 179.68977 * 8 7 6 10 10 N 1.34780 * 119.99702 * 359.68542 * 8 7 6 11 11 C 1.46498 * 119.99675 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.50746 * 34.92581 * 11 10 8 13 13 C 1.53117 * 109.53688 * 274.81990 * 11 10 8 14 14 C 1.53119 * 109.15958 * 182.38505 * 13 11 10 15 15 C 1.53034 * 109.28093 * 57.65965 * 14 13 11 16 16 N 1.46850 * 109.51902 * 300.82014 * 15 14 13 17 17 C 1.46902 * 110.99331 * 185.83612 * 16 15 14 18 18 C 1.50707 * 109.46855 * 169.43257 * 17 16 15 19 19 O 1.21296 * 119.99679 * 353.78220 * 18 17 16 20 20 N 1.34770 * 120.00259 * 173.78609 * 18 17 16 21 21 C 1.37098 * 120.00168 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99975 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00047 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99862 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00004 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47018 * 89.99998 * 25 23 21 27 27 H 1.48492 * 109.47117 * 210.00012 * 25 23 21 28 28 H 1.48496 * 109.46981 * 330.00316 * 25 23 21 29 29 C 1.46841 * 111.19861 * 61.74346 * 16 15 14 30 30 H 1.09005 * 109.47106 * 269.95730 * 1 2 3 31 31 H 1.08996 * 109.47393 * 29.96149 * 1 2 3 32 32 H 1.09002 * 109.46894 * 149.96328 * 1 2 3 33 33 H 1.08003 * 125.56770 * 0.02562 * 3 2 1 34 34 H 1.08003 * 125.80620 * 180.30410 * 6 4 3 35 35 H 0.96991 * 120.00356 * 359.97438 * 10 8 7 36 36 H 1.08995 * 109.52780 * 302.29261 * 13 11 10 37 37 H 1.09004 * 109.51951 * 62.42022 * 13 11 10 38 38 H 1.09011 * 109.49915 * 177.60106 * 14 13 11 39 39 H 1.09000 * 109.50748 * 297.67350 * 14 13 11 40 40 H 1.09002 * 109.45844 * 60.82879 * 15 14 13 41 41 H 1.08996 * 109.46368 * 180.80047 * 15 14 13 42 42 H 1.09003 * 109.47328 * 289.42735 * 17 16 15 43 43 H 1.08999 * 109.47339 * 49.43514 * 17 16 15 44 44 H 0.97006 * 119.99878 * 359.97438 * 20 18 17 45 45 H 0.97002 * 119.99987 * 180.02562 * 24 23 21 46 46 H 1.09006 * 109.45948 * 178.24061 * 29 16 15 47 47 H 1.08998 * 109.46669 * 58.27228 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3839 1.2413 -0.0011 6 6 3.6656 -0.6902 0.0051 7 6 2.3864 -1.1741 -0.0005 8 6 1.9749 -2.5881 -0.0006 9 8 0.7937 -2.8777 -0.0003 10 7 2.9074 -3.5612 -0.0012 11 6 2.4981 -4.9678 -0.0019 12 1 1.5874 -5.0816 -0.5901 13 6 2.2387 -5.4263 1.4358 14 6 1.8695 -6.9124 1.4305 15 6 3.0002 -7.7116 0.7788 16 7 3.2091 -7.2358 -0.5947 17 6 4.1920 -8.0713 -1.2973 18 6 4.1905 -7.7231 -2.7636 19 8 3.3682 -6.9463 -3.2016 20 7 5.1026 -8.2747 -3.5882 21 6 5.1015 -7.9575 -4.9220 22 1 4.3695 -7.2659 -5.3120 23 6 6.0423 -8.5259 -5.7721 24 7 6.0409 -8.2223 -7.0506 25 14 7.3090 -9.7217 -5.0975 26 1 6.7726 -11.1046 -5.1710 27 1 8.5538 -9.6302 -5.9019 28 1 7.6073 -9.3811 -3.6832 29 6 3.6106 -5.8235 -0.6121 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5132 32 1 -0.3633 -0.8897 -0.5144 33 1 1.9868 2.1058 0.0004 34 1 4.5664 -1.2861 0.0106 35 1 3.8494 -3.3303 -0.0019 36 1 3.1375 -5.2764 2.0338 37 1 1.4181 -4.8477 1.8602 38 1 1.7252 -7.2551 2.4552 39 1 0.9486 -7.0566 0.8655 40 1 3.9171 -7.5777 1.3529 41 1 2.7343 -8.7685 0.7607 42 1 5.1839 -7.8921 -0.8825 43 1 3.9306 -9.1222 -1.1732 44 1 5.7604 -8.8957 -3.2379 45 1 6.6974 -8.6193 -7.6441 46 1 3.7880 -5.5090 -1.6406 47 1 4.5247 -5.6985 -0.0315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479914096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:54 Heat of formation + Delta-G solvation = -19.828986 kcal Electronic energy + Delta-G solvation = -28683.762208 eV Core-core repulsion = 24674.167287 eV Total energy + Delta-G solvation = -4009.594921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34720 -39.75536 -38.65968 -37.52247 -34.65126 -33.93315 -32.59989 -32.54580 -31.63849 -30.64764 -28.82393 -27.60118 -26.67016 -24.60388 -23.71897 -22.83681 -21.93253 -20.06079 -20.00322 -19.33560 -19.11844 -18.48348 -18.24971 -16.42497 -16.18602 -15.86868 -15.20652 -15.05865 -14.87761 -14.74741 -14.32906 -14.19723 -13.92794 -13.78951 -13.57683 -13.40684 -13.18165 -13.06786 -12.93887 -12.75530 -12.52533 -12.44020 -12.29869 -11.86496 -11.61613 -11.50666 -11.25493 -11.16682 -10.84105 -10.63792 -10.59127 -10.46861 -9.96608 -9.68906 -9.52899 -8.98609 -8.70370 -8.53596 -8.46391 -8.16616 -7.96694 -6.30016 -3.81272 1.64977 2.24988 2.97201 3.01744 3.06758 3.14735 3.24403 3.62554 3.75849 4.02020 4.10837 4.63142 4.76214 4.80679 4.88014 4.96754 4.99103 5.04406 5.19553 5.24102 5.27572 5.39734 5.46121 5.56172 5.64343 5.65026 5.69189 5.74484 5.77150 5.79083 5.95077 5.96658 5.98468 6.11604 6.16790 6.18197 6.34044 6.45359 6.60852 6.65776 6.71827 7.16563 7.20660 7.32079 7.59831 7.69456 8.16209 8.46655 8.61820 8.96975 9.43903 9.85544 10.83224 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.002713 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.513765 B =10316.381567 C =11748.518973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.108 4.108 3 C -0.029 4.029 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.046 3.954 7 C -0.224 4.224 8 C 0.591 3.409 9 O -0.540 6.540 10 N -0.724 5.724 11 C 0.154 3.846 12 H 0.100 0.900 13 C -0.128 4.128 14 C -0.112 4.112 15 C 0.053 3.947 16 N -0.511 5.511 17 C 0.045 3.955 18 C 0.451 3.549 19 O -0.555 6.555 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.051 3.949 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.393 0.607 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.030 0.970 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.093 0.907 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.103 0.897 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 12.874 20.710 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.157 4.157 4 N -0.144 5.144 5 H 0.253 0.747 6 C -0.090 4.090 7 C -0.235 4.235 8 C 0.379 3.621 9 O -0.418 6.418 10 N -0.375 5.375 11 C 0.049 3.951 12 H 0.119 0.881 13 C -0.167 4.167 14 C -0.151 4.151 15 C -0.074 4.074 16 N -0.235 5.235 17 C -0.086 4.086 18 C 0.236 3.764 19 O -0.436 6.436 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.196 1.196 29 C -0.078 4.078 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.227 0.773 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.502 13.226 19.927 24.047 hybrid contribution 2.990 -0.599 0.739 3.138 sum 0.488 12.627 20.666 24.223 Atomic orbital electron populations 1.20199 0.89306 1.02735 1.01858 1.20574 0.95694 0.90336 1.04885 1.21567 0.82439 0.99200 1.12446 1.41469 1.08306 1.06672 1.57978 0.74689 1.21930 0.98575 0.83897 1.04648 1.20429 0.92676 0.92938 1.17464 1.17349 0.85417 0.83867 0.75446 1.90743 1.17154 1.83646 1.50227 1.45805 1.09271 1.06115 1.76263 1.20877 0.99436 0.78727 0.96065 0.88148 1.21970 1.01493 0.96420 0.96825 1.21518 0.99235 0.94172 1.00145 1.22168 0.97474 0.99527 0.88277 1.61328 1.46220 1.01585 1.14409 1.21890 0.94021 0.98407 0.94311 1.19684 0.84222 0.85519 0.86966 1.90573 1.39209 1.37076 1.76718 1.42228 1.29779 1.42156 1.09104 1.19429 1.16481 1.26345 0.80929 0.86270 1.25034 0.97890 0.98023 0.95251 1.69622 1.36112 1.43483 1.03029 0.86679 0.81909 0.81945 0.78873 1.19606 1.20265 1.19581 1.22357 0.94390 0.88062 1.02976 0.91929 0.92438 0.90123 0.81480 0.81170 0.77340 0.92494 0.91348 0.91402 0.90567 0.95208 0.90547 0.93513 0.88868 0.79788 0.91655 0.87895 0.95597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.98 36.01 0.36 -0.57 16 2 C -0.11 -1.26 6.35 -102.54 -0.65 -1.91 16 3 C -0.03 -0.24 11.82 -16.83 -0.20 -0.44 16 4 N -0.55 -3.75 5.90 -12.85 -0.08 -3.83 16 5 H 0.42 1.35 8.96 -40.82 -0.37 0.98 16 6 C 0.05 0.40 11.40 -16.84 -0.19 0.21 16 7 C -0.22 -2.79 6.29 -103.35 -0.65 -3.44 16 8 C 0.59 8.80 7.78 -12.59 -0.10 8.71 16 9 O -0.54 -9.91 14.98 5.26 0.08 -9.83 16 10 N -0.72 -9.36 5.07 -54.85 -0.28 -9.64 16 11 C 0.15 2.24 2.62 -67.85 -0.18 2.06 16 12 H 0.10 1.83 7.58 -51.93 -0.39 1.43 16 13 C -0.13 -1.57 5.58 -26.61 -0.15 -1.72 16 14 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 15 C 0.05 0.65 5.46 -3.83 -0.02 0.63 16 16 N -0.51 -8.13 4.35 -236.11 -1.03 -9.16 16 17 C 0.05 0.75 5.45 -4.97 -0.03 0.72 16 18 C 0.45 10.13 7.31 -10.98 -0.08 10.05 16 19 O -0.55 -14.79 14.28 5.54 0.08 -14.71 16 20 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 21 C -0.30 -8.53 10.16 -14.93 -0.15 -8.69 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 25 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 29 C 0.05 0.78 4.59 -3.83 -0.02 0.76 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.10 6.85 -51.93 -0.36 0.75 16 33 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.17 0.95 7.45 -52.48 -0.39 0.56 16 35 H 0.39 3.95 7.55 -40.82 -0.31 3.64 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 42 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 43 H 0.09 1.34 7.98 -51.93 -0.41 0.93 16 44 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.10 1.97 6.05 -51.93 -0.31 1.66 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -36.78 381.67 -8.76 -45.53 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.98 Total: 14.49 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.31 Total: 5.92 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.66 Total: -61.68 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.16 Total: -24.54 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.78 -8.76 -45.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479914096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.704 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds