Wall clock time and date at job start Tue Mar 31 2020 18:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34481 * 126.83665 * 2 1 4 4 N 1.36442 * 108.85990 * 180.02562 * 3 2 1 5 5 H 0.96996 * 124.84915 * 179.97438 * 4 3 2 6 6 C 1.34656 * 110.29876 * 359.72598 * 4 3 2 7 7 C 1.36770 * 108.39431 * 0.44219 * 6 4 3 8 8 C 1.47264 * 126.94310 * 179.83844 * 7 6 4 9 9 O 1.21624 * 120.00211 * 179.68977 * 8 7 6 10 10 N 1.34780 * 119.99702 * 359.68542 * 8 7 6 11 11 C 1.46498 * 119.99675 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.50746 * 34.92581 * 11 10 8 13 13 C 1.53117 * 109.53688 * 274.81990 * 11 10 8 14 14 C 1.53119 * 109.15958 * 182.38505 * 13 11 10 15 15 C 1.53034 * 109.28093 * 57.65965 * 14 13 11 16 16 N 1.46850 * 109.51902 * 300.82014 * 15 14 13 17 17 C 1.46902 * 110.99331 * 185.83612 * 16 15 14 18 18 C 1.50707 * 109.46855 * 169.43257 * 17 16 15 19 19 O 1.21296 * 119.99679 * 353.78220 * 18 17 16 20 20 N 1.34770 * 120.00259 * 173.78609 * 18 17 16 21 21 C 1.37098 * 120.00168 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99975 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00047 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99862 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00004 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47018 * 89.99998 * 25 23 21 27 27 H 1.48492 * 109.47117 * 210.00012 * 25 23 21 28 28 H 1.48496 * 109.46981 * 330.00316 * 25 23 21 29 29 C 1.46841 * 111.19861 * 61.74346 * 16 15 14 30 30 H 1.09005 * 109.47106 * 269.95730 * 1 2 3 31 31 H 1.08996 * 109.47393 * 29.96149 * 1 2 3 32 32 H 1.09002 * 109.46894 * 149.96328 * 1 2 3 33 33 H 1.08003 * 125.56770 * 0.02562 * 3 2 1 34 34 H 1.08003 * 125.80620 * 180.30410 * 6 4 3 35 35 H 0.96991 * 120.00356 * 359.97438 * 10 8 7 36 36 H 1.08995 * 109.52780 * 302.29261 * 13 11 10 37 37 H 1.09004 * 109.51951 * 62.42022 * 13 11 10 38 38 H 1.09011 * 109.49915 * 177.60106 * 14 13 11 39 39 H 1.09000 * 109.50748 * 297.67350 * 14 13 11 40 40 H 1.09002 * 109.45844 * 60.82879 * 15 14 13 41 41 H 1.08996 * 109.46368 * 180.80047 * 15 14 13 42 42 H 1.09003 * 109.47328 * 289.42735 * 17 16 15 43 43 H 1.08999 * 109.47339 * 49.43514 * 17 16 15 44 44 H 0.97006 * 119.99878 * 359.97438 * 20 18 17 45 45 H 0.97002 * 119.99987 * 180.02562 * 24 23 21 46 46 H 1.09006 * 109.45948 * 178.24061 * 29 16 15 47 47 H 1.08998 * 109.46669 * 58.27228 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3839 1.2413 -0.0011 6 6 3.6656 -0.6902 0.0051 7 6 2.3864 -1.1741 -0.0005 8 6 1.9749 -2.5881 -0.0006 9 8 0.7937 -2.8777 -0.0003 10 7 2.9074 -3.5612 -0.0012 11 6 2.4981 -4.9678 -0.0019 12 1 1.5874 -5.0816 -0.5901 13 6 2.2387 -5.4263 1.4358 14 6 1.8695 -6.9124 1.4305 15 6 3.0002 -7.7116 0.7788 16 7 3.2091 -7.2358 -0.5947 17 6 4.1920 -8.0713 -1.2973 18 6 4.1905 -7.7231 -2.7636 19 8 3.3682 -6.9463 -3.2016 20 7 5.1026 -8.2747 -3.5882 21 6 5.1015 -7.9575 -4.9220 22 1 4.3695 -7.2659 -5.3120 23 6 6.0423 -8.5259 -5.7721 24 7 6.0409 -8.2223 -7.0506 25 14 7.3090 -9.7217 -5.0975 26 1 6.7726 -11.1046 -5.1710 27 1 8.5538 -9.6302 -5.9019 28 1 7.6073 -9.3811 -3.6832 29 6 3.6106 -5.8235 -0.6121 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5132 32 1 -0.3633 -0.8897 -0.5144 33 1 1.9868 2.1058 0.0004 34 1 4.5664 -1.2861 0.0106 35 1 3.8494 -3.3303 -0.0019 36 1 3.1375 -5.2764 2.0338 37 1 1.4181 -4.8477 1.8602 38 1 1.7252 -7.2551 2.4552 39 1 0.9486 -7.0566 0.8655 40 1 3.9171 -7.5777 1.3529 41 1 2.7343 -8.7685 0.7607 42 1 5.1839 -7.8921 -0.8825 43 1 3.9306 -9.1222 -1.1732 44 1 5.7604 -8.8957 -3.2379 45 1 6.6974 -8.6193 -7.6441 46 1 3.7880 -5.5090 -1.6406 47 1 4.5247 -5.6985 -0.0315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479914096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:53 Heat of formation + Delta-G solvation = -50.361077 kcal Electronic energy + Delta-G solvation = -28685.086179 eV Core-core repulsion = 24674.167287 eV Total energy + Delta-G solvation = -4010.918892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10318 -40.98027 -40.13618 -38.92073 -36.08744 -35.68959 -33.83687 -33.62656 -33.33418 -31.59777 -29.81341 -29.04248 -27.45215 -26.37373 -24.72684 -24.12526 -22.94827 -21.25893 -21.13851 -20.80667 -20.18994 -20.03626 -19.18053 -17.73521 -17.35954 -17.29469 -16.73430 -16.34536 -16.13964 -15.96888 -15.44633 -15.38926 -15.10789 -14.90244 -14.80020 -14.64273 -14.44677 -14.26435 -14.18281 -13.91547 -13.80599 -13.59025 -13.30389 -13.25653 -13.06426 -12.72499 -12.40069 -12.38536 -12.27395 -11.98576 -11.86981 -11.74531 -11.57633 -11.43994 -10.85391 -10.36879 -10.22386 -10.07638 -9.53378 -9.18093 -9.16875 -8.39572 -6.00401 0.78964 1.30739 1.37378 1.45782 1.49855 1.99367 2.11384 2.24646 2.45368 2.59173 2.72752 3.16852 3.29758 3.73953 3.88457 3.98971 4.05619 4.09521 4.13848 4.27243 4.28188 4.31591 4.41464 4.47461 4.54650 4.65912 4.69120 4.73313 4.76138 4.87965 4.92111 4.97224 5.01996 5.09230 5.15337 5.25971 5.32151 5.40897 5.51685 5.56197 5.82594 5.92465 5.96171 6.04843 6.24851 6.62313 6.65081 6.73353 6.91299 7.38895 7.42754 8.01599 8.78467 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.002713 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.513765 B =10316.381567 C =11748.518973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.153 4.153 3 C -0.009 4.009 4 N -0.532 5.532 5 H 0.438 0.562 6 C 0.069 3.931 7 C -0.273 4.273 8 C 0.583 3.417 9 O -0.591 6.591 10 N -0.714 5.714 11 C 0.159 3.841 12 H 0.048 0.952 13 C -0.117 4.117 14 C -0.110 4.110 15 C 0.056 3.944 16 N -0.542 5.542 17 C 0.058 3.942 18 C 0.449 3.551 19 O -0.607 6.607 20 N -0.592 5.592 21 C -0.326 4.326 22 H 0.051 0.949 23 C -0.017 4.017 24 N -0.938 5.938 25 Si 0.967 3.033 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.228 1.228 29 C 0.060 3.940 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.203 0.797 34 H 0.204 0.796 35 H 0.409 0.591 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.056 0.944 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.958 12.224 24.486 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.159 4.159 3 C -0.137 4.137 4 N -0.127 5.127 5 H 0.279 0.721 6 C -0.070 4.070 7 C -0.283 4.283 8 C 0.373 3.627 9 O -0.473 6.473 10 N -0.365 5.365 11 C 0.053 3.947 12 H 0.066 0.934 13 C -0.156 4.156 14 C -0.148 4.148 15 C -0.070 4.070 16 N -0.268 5.268 17 C -0.073 4.073 18 C 0.237 3.763 19 O -0.491 6.491 20 N -0.235 5.235 21 C -0.455 4.455 22 H 0.069 0.931 23 C -0.215 4.215 24 N -0.579 5.579 25 Si 0.787 3.213 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.151 1.151 29 C -0.068 4.068 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.219 0.781 34 H 0.221 0.779 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.143 0.857 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.311 12.600 23.744 26.912 hybrid contribution 1.708 -0.245 -0.505 1.797 sum 3.018 12.355 23.239 26.492 Atomic orbital electron populations 1.20096 0.90061 1.01862 1.01580 1.20824 0.95996 0.91484 1.07634 1.21974 0.82370 0.99768 1.09590 1.41528 1.08780 1.06362 1.56053 0.72091 1.22301 0.98133 0.84809 1.01737 1.20433 0.94895 0.91684 1.21291 1.17889 0.84944 0.85316 0.74523 1.90705 1.19240 1.84535 1.52788 1.45682 1.09924 1.05311 1.75619 1.20682 0.97208 0.79693 0.97081 0.93380 1.21874 1.02017 0.96847 0.94850 1.21544 0.98216 0.93491 1.01593 1.22266 0.98555 1.00204 0.86008 1.61231 1.46770 1.01587 1.17207 1.21827 0.96330 0.99947 0.89161 1.21012 0.82286 0.83462 0.89589 1.90568 1.41029 1.39040 1.78452 1.42033 1.30985 1.43047 1.07392 1.18970 1.16234 1.26600 0.83705 0.93059 1.26144 1.00266 1.00008 0.95123 1.69817 1.37589 1.45285 1.05168 0.85340 0.77383 0.78427 0.80190 1.18264 1.20137 1.15106 1.22143 0.95720 0.88297 1.00651 0.91984 0.90253 0.93916 0.78066 0.77938 0.75484 0.89854 0.92955 0.88193 0.93019 0.92418 0.88891 0.89806 0.85744 0.77463 0.91211 0.92588 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 9.98 71.24 0.71 -1.19 16 2 C -0.15 -3.61 6.35 -18.52 -0.12 -3.73 16 3 C -0.01 -0.13 11.82 83.12 0.98 0.85 16 4 N -0.53 -5.63 5.90 -194.56 -1.15 -6.78 16 5 H 0.44 1.06 8.96 -92.71 -0.83 0.23 16 6 C 0.07 1.05 11.40 83.92 0.96 2.01 16 7 C -0.27 -6.92 6.29 -19.04 -0.12 -7.04 16 8 C 0.58 18.69 7.78 86.62 0.67 19.37 16 9 O -0.59 -24.19 14.98 -4.11 -0.06 -24.25 16 10 N -0.71 -19.18 5.07 -445.69 -2.26 -21.44 16 11 C 0.16 4.82 2.62 45.05 0.12 4.94 16 12 H 0.05 1.95 7.58 -2.39 -0.02 1.94 16 13 C -0.12 -2.78 5.58 30.67 0.17 -2.61 16 14 C -0.11 -2.33 6.09 30.65 0.19 -2.14 16 15 C 0.06 1.16 5.46 86.32 0.47 1.63 16 16 N -0.54 -16.42 4.35 -900.90 -3.92 -20.33 16 17 C 0.06 1.74 5.45 85.56 0.47 2.21 16 18 C 0.45 20.29 7.31 87.66 0.64 20.94 16 19 O -0.61 -34.41 14.28 -3.08 -0.04 -34.45 16 20 N -0.59 -27.77 5.09 -306.98 -1.56 -29.34 16 21 C -0.33 -19.20 10.16 84.04 0.85 -18.34 16 22 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 24 N -0.94 -57.01 13.96 21.66 0.30 -56.70 16 25 Si 0.97 38.43 27.74 68.60 1.90 40.34 16 26 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 27 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.23 -7.45 6.52 99.48 0.65 -6.80 16 29 C 0.06 1.85 4.59 86.33 0.40 2.24 16 30 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.33 6.85 -2.39 -0.02 1.31 16 33 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.20 1.60 7.45 -2.91 -0.02 1.58 16 35 H 0.41 7.95 7.55 -92.71 -0.70 7.26 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.64 8.01 -2.39 -0.02 1.62 16 42 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 43 H 0.12 3.02 7.98 -2.39 -0.02 3.00 16 44 H 0.39 14.90 5.76 -92.70 -0.53 14.37 16 45 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.06 2.25 6.05 -2.38 -0.01 2.23 16 47 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -93.35 381.67 -1.03 -94.38 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -1.10 Total: 39.92 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.86 Total: 18.66 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -8.59 Total: -134.59 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -0.11 Total: -58.70 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.90 Total: 40.34 kcal Total: -93.35 -1.03 -94.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479914096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.019 kcal (2) G-P(sol) polarization free energy of solvation -93.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds