Wall clock time and date at job start Tue Mar 31 2020 18:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34487 * 126.83574 * 2 1 4 4 N 1.36444 * 108.85999 * 180.02562 * 3 2 1 5 5 H 0.97003 * 124.85181 * 179.97438 * 4 3 2 6 6 C 1.34659 * 110.29632 * 359.97438 * 4 3 2 7 7 C 1.36767 * 108.39711 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.94027 * 179.73405 * 7 6 4 9 9 O 1.21627 * 119.99591 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00314 * 0.02998 * 8 7 6 11 11 C 1.46497 * 120.00483 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47771 * 179.97438 * 11 10 8 13 13 H 1.09009 * 109.46678 * 294.99921 * 12 11 10 14 14 N 1.46902 * 109.47003 * 54.99272 * 12 11 10 15 15 C 1.46902 * 111.00161 * 222.70371 * 14 12 11 16 16 C 1.50697 * 109.46888 * 186.11607 * 15 14 12 17 17 O 1.21285 * 120.00224 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99670 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00006 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99819 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00127 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99936 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99785 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46774 * 90.00385 * 23 21 19 25 25 H 1.48496 * 109.47053 * 210.00242 * 23 21 19 26 26 H 1.48496 * 109.47357 * 330.00329 * 23 21 19 27 27 C 1.52989 * 109.47492 * 174.99919 * 12 11 10 28 28 C 1.53005 * 117.49828 * 251.54065 * 27 12 11 29 29 C 1.53004 * 117.50022 * 182.87704 * 27 12 11 30 30 H 1.08995 * 109.47298 * 269.97931 * 1 2 3 31 31 H 1.08995 * 109.46732 * 29.98093 * 1 2 3 32 32 H 1.08997 * 109.46950 * 149.97582 * 1 2 3 33 33 H 1.07999 * 125.56766 * 0.05012 * 3 2 1 34 34 H 1.08002 * 125.80226 * 180.02562 * 6 4 3 35 35 H 0.97000 * 119.99993 * 359.97438 * 10 8 7 36 36 H 1.09009 * 109.46952 * 299.99617 * 11 10 8 37 37 H 1.09007 * 109.47375 * 59.99163 * 11 10 8 38 38 H 1.00899 * 110.99899 * 346.65764 * 14 12 11 39 39 H 1.08998 * 109.46753 * 306.11888 * 15 14 12 40 40 H 1.08996 * 109.46985 * 66.11160 * 15 14 12 41 41 H 0.97005 * 119.99929 * 359.97438 * 18 16 15 42 42 H 0.97000 * 119.99744 * 179.97438 * 22 21 19 43 43 H 1.08997 * 115.55214 * 37.20431 * 27 12 11 44 44 H 1.08996 * 117.49720 * 359.97438 * 28 27 12 45 45 H 1.08993 * 117.50059 * 145.02189 * 28 27 12 46 46 H 1.08996 * 117.49889 * 214.97399 * 29 27 12 47 47 H 1.09003 * 117.49440 * 359.97438 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3841 1.2414 -0.0011 6 6 3.6657 -0.6902 -0.0004 7 6 2.3864 -1.1740 -0.0003 8 6 1.9750 -2.5880 -0.0055 9 8 0.7937 -2.8776 -0.0052 10 7 2.9074 -3.5611 -0.0106 11 6 2.4981 -4.9678 -0.0164 12 6 3.7407 -5.8606 -0.0220 13 1 4.2879 -5.7156 -0.9535 14 7 4.6034 -5.5061 1.1130 15 6 6.0153 -5.4677 0.7091 16 6 6.8795 -5.2502 1.9243 17 8 6.3695 -5.1378 3.0190 18 7 8.2192 -5.1797 1.7946 19 6 9.0056 -4.9823 2.9002 20 1 8.5515 -4.8830 3.8750 21 6 10.3868 -4.9101 2.7665 22 7 11.1404 -4.7205 3.8261 23 14 11.1722 -5.0826 1.0804 24 1 11.2901 -3.7433 0.4500 25 1 12.5227 -5.6835 1.2225 26 1 10.3281 -5.9582 0.2283 27 6 3.3166 -7.3256 0.0977 28 6 3.6002 -8.0372 1.4222 29 6 4.4247 -8.3776 0.1781 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3632 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.9868 2.1058 0.0008 34 1 4.5665 -1.2860 -0.0004 35 1 3.8495 -3.3302 -0.0111 36 1 1.9041 -5.1770 0.8734 37 1 1.9023 -5.1693 -0.9067 38 1 4.3203 -4.6283 1.5220 39 1 6.2838 -6.4125 0.2366 40 1 6.1692 -4.6518 0.0030 41 1 8.6271 -5.2693 0.9190 42 1 12.1046 -4.6704 3.7328 43 1 2.4038 -7.5957 -0.4332 44 1 4.0893 -7.4617 2.2081 45 1 2.8743 -8.7757 1.7623 46 1 4.2408 -9.3398 -0.2996 47 1 5.4559 -8.0258 0.1453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480063154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:33 Heat of formation + Delta-G solvation = 8.874745 kcal Electronic energy + Delta-G solvation = -28606.975239 eV Core-core repulsion = 24598.625005 eV Total energy + Delta-G solvation = -4008.350234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38039 -39.60994 -38.63713 -37.77548 -35.18255 -34.13207 -33.36979 -32.58853 -31.71403 -30.74815 -29.06391 -26.70439 -26.34207 -24.22039 -23.63358 -22.38341 -21.96117 -20.23108 -19.89966 -19.56487 -19.26002 -18.56326 -18.33557 -16.75180 -16.10594 -15.96401 -15.77856 -15.36849 -15.06332 -14.77514 -14.53283 -14.29708 -14.06585 -13.97917 -13.63883 -13.55105 -13.19743 -13.10908 -12.80274 -12.63818 -12.50124 -12.44378 -12.20447 -11.88160 -11.75557 -11.54581 -11.31234 -11.22473 -11.04744 -10.64879 -10.15502 -10.02532 -9.89921 -9.79747 -9.62292 -9.19946 -8.77754 -8.64001 -8.48858 -8.24843 -8.19299 -6.35907 -3.87538 1.58906 2.21413 2.95211 2.97314 3.00430 3.10239 3.15788 3.49939 3.67899 3.84370 4.04692 4.13937 4.58714 4.64776 4.76340 4.81580 4.87551 4.97996 5.05526 5.15848 5.18190 5.27432 5.35787 5.36444 5.44318 5.55750 5.60423 5.61078 5.66186 5.74000 5.83234 5.88545 5.94382 5.96878 6.08044 6.11760 6.34804 6.36820 6.59170 6.69121 6.73417 7.00888 7.19124 7.44969 7.46647 7.53163 8.09551 8.27460 8.54712 8.90405 9.37308 9.77684 10.77224 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.003284 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.936637 B = 8524.094724 C =10863.410214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.109 4.109 3 C -0.027 4.027 4 N -0.548 5.548 5 H 0.419 0.581 6 C 0.052 3.948 7 C -0.231 4.231 8 C 0.593 3.407 9 O -0.542 6.542 10 N -0.734 5.734 11 C 0.117 3.883 12 C 0.106 3.894 13 H 0.061 0.939 14 N -0.660 5.660 15 C 0.044 3.956 16 C 0.449 3.551 17 O -0.559 6.559 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.152 4.152 28 C -0.155 4.155 29 C -0.179 4.179 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.394 0.606 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.352 0.648 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.369 0.631 42 H 0.273 0.727 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.679 6.580 -14.293 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C -0.155 4.155 4 N -0.141 5.141 5 H 0.256 0.744 6 C -0.085 4.085 7 C -0.241 4.241 8 C 0.382 3.618 9 O -0.420 6.420 10 N -0.387 5.387 11 C -0.007 4.007 12 C -0.004 4.004 13 H 0.079 0.921 14 N -0.295 5.295 15 C -0.089 4.089 16 C 0.235 3.765 17 O -0.441 6.441 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.172 4.172 28 C -0.192 4.192 29 C -0.216 4.216 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.186 0.814 34 H 0.188 0.812 35 H 0.229 0.771 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.174 0.826 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.202 0.798 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.140 0.860 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.551 5.945 -13.197 21.245 hybrid contribution 1.965 0.978 -1.804 2.841 sum -13.586 6.923 -15.001 21.390 Atomic orbital electron populations 1.20186 0.89327 1.02447 1.02023 1.20545 0.95619 0.90295 1.05118 1.21588 0.82425 0.99248 1.12232 1.41508 1.08426 1.06718 1.57475 0.74447 1.21969 0.98558 0.84032 1.03953 1.20337 0.92699 0.92743 1.18352 1.17347 0.85215 0.83947 0.75290 1.90739 1.17134 1.83769 1.50386 1.45892 1.09548 1.06353 1.76907 1.21610 0.96793 0.79023 1.03304 1.21244 0.92495 0.93573 0.93112 0.92062 1.59969 1.00701 1.40125 1.28681 1.21928 0.89182 1.01496 0.96299 1.19678 0.82521 0.84221 0.90098 1.90585 1.72845 1.53412 1.27228 1.42220 1.05699 1.65950 1.09229 1.19424 0.88175 1.46578 0.89162 0.86283 1.25039 0.95972 0.97658 0.97482 1.69620 1.05516 1.48515 1.28431 0.86682 0.80073 0.78752 0.83922 1.19753 1.20165 1.19481 1.22176 0.99812 0.91588 1.03621 1.22987 1.02172 1.01759 0.92323 1.22912 0.96693 0.98558 1.03475 0.91779 0.92467 0.90375 0.81410 0.81185 0.77139 0.90205 0.90788 0.82620 0.89192 0.93960 0.79795 0.91597 0.87941 0.86007 0.90113 0.89662 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.98 36.01 0.36 -0.50 16 2 C -0.11 -1.23 6.35 -102.54 -0.65 -1.88 16 3 C -0.03 -0.23 11.82 -16.83 -0.20 -0.43 16 4 N -0.55 -4.09 5.90 -12.85 -0.08 -4.16 16 5 H 0.42 1.81 8.96 -40.82 -0.37 1.44 16 6 C 0.05 0.48 11.40 -16.84 -0.19 0.29 16 7 C -0.23 -2.77 6.29 -103.35 -0.65 -3.42 16 8 C 0.59 8.04 7.81 -12.60 -0.10 7.94 16 9 O -0.54 -8.98 15.32 5.25 0.08 -8.90 16 10 N -0.73 -8.20 4.89 -61.43 -0.30 -8.50 16 11 C 0.12 1.30 5.17 -4.04 -0.02 1.28 16 12 C 0.11 1.16 2.66 -67.72 -0.18 0.98 16 13 H 0.06 0.61 7.63 -51.92 -0.40 0.22 16 14 N -0.66 -9.09 3.99 -107.99 -0.43 -9.52 16 15 C 0.04 0.64 5.76 -4.98 -0.03 0.61 16 16 C 0.45 9.50 7.84 -10.98 -0.09 9.41 16 17 O -0.56 -14.29 15.91 5.55 0.09 -14.20 16 18 N -0.59 -13.32 5.09 -10.96 -0.06 -13.38 16 19 C -0.30 -8.33 10.16 -14.93 -0.15 -8.48 16 20 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.22 13.96 55.50 0.77 -24.44 16 23 Si 0.88 18.70 27.74 -169.99 -4.71 13.99 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 27 C -0.15 -1.69 5.69 -90.62 -0.52 -2.20 16 28 C -0.16 -2.00 9.86 -26.68 -0.26 -2.26 16 29 C -0.18 -2.11 10.07 -26.68 -0.27 -2.38 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.96 6.85 -51.93 -0.36 0.60 16 33 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.17 1.18 7.45 -52.49 -0.39 0.79 16 35 H 0.39 3.78 6.67 -40.82 -0.27 3.51 16 36 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.35 5.11 6.88 -39.29 -0.27 4.84 16 39 H 0.09 1.23 5.96 -51.93 -0.31 0.92 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.37 7.27 5.76 -40.82 -0.24 7.04 16 42 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 44 H 0.12 1.95 6.99 -51.93 -0.36 1.58 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.18 5.92 -51.93 -0.31 0.88 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -35.02 387.84 -8.46 -43.48 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -6.63 Total: 19.82 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.04 Total: -0.03 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.09 Total: -60.00 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.17 Total: -23.10 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.99 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.02 -8.46 -43.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480063154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.358 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds