Wall clock time and date at job start Tue Mar 31 2020 18:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34487 * 126.83574 * 2 1 4 4 N 1.36444 * 108.85999 * 180.02562 * 3 2 1 5 5 H 0.97003 * 124.85181 * 179.97438 * 4 3 2 6 6 C 1.34659 * 110.29632 * 359.97438 * 4 3 2 7 7 C 1.36767 * 108.39711 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.94027 * 179.73405 * 7 6 4 9 9 O 1.21627 * 119.99591 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00314 * 0.02998 * 8 7 6 11 11 C 1.46497 * 120.00483 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47771 * 179.97438 * 11 10 8 13 13 H 1.09009 * 109.46678 * 294.99921 * 12 11 10 14 14 N 1.46902 * 109.47003 * 54.99272 * 12 11 10 15 15 C 1.46902 * 111.00161 * 222.70371 * 14 12 11 16 16 C 1.50697 * 109.46888 * 186.11607 * 15 14 12 17 17 O 1.21285 * 120.00224 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99670 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00006 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99819 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00127 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99936 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99785 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46774 * 90.00385 * 23 21 19 25 25 H 1.48496 * 109.47053 * 210.00242 * 23 21 19 26 26 H 1.48496 * 109.47357 * 330.00329 * 23 21 19 27 27 C 1.52989 * 109.47492 * 174.99919 * 12 11 10 28 28 C 1.53005 * 117.49828 * 251.54065 * 27 12 11 29 29 C 1.53004 * 117.50022 * 182.87704 * 27 12 11 30 30 H 1.08995 * 109.47298 * 269.97931 * 1 2 3 31 31 H 1.08995 * 109.46732 * 29.98093 * 1 2 3 32 32 H 1.08997 * 109.46950 * 149.97582 * 1 2 3 33 33 H 1.07999 * 125.56766 * 0.05012 * 3 2 1 34 34 H 1.08002 * 125.80226 * 180.02562 * 6 4 3 35 35 H 0.97000 * 119.99993 * 359.97438 * 10 8 7 36 36 H 1.09009 * 109.46952 * 299.99617 * 11 10 8 37 37 H 1.09007 * 109.47375 * 59.99163 * 11 10 8 38 38 H 1.00899 * 110.99899 * 346.65764 * 14 12 11 39 39 H 1.08998 * 109.46753 * 306.11888 * 15 14 12 40 40 H 1.08996 * 109.46985 * 66.11160 * 15 14 12 41 41 H 0.97005 * 119.99929 * 359.97438 * 18 16 15 42 42 H 0.97000 * 119.99744 * 179.97438 * 22 21 19 43 43 H 1.08997 * 115.55214 * 37.20431 * 27 12 11 44 44 H 1.08996 * 117.49720 * 359.97438 * 28 27 12 45 45 H 1.08993 * 117.50059 * 145.02189 * 28 27 12 46 46 H 1.08996 * 117.49889 * 214.97399 * 29 27 12 47 47 H 1.09003 * 117.49440 * 359.97438 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3841 1.2414 -0.0011 6 6 3.6657 -0.6902 -0.0004 7 6 2.3864 -1.1740 -0.0003 8 6 1.9750 -2.5880 -0.0055 9 8 0.7937 -2.8776 -0.0052 10 7 2.9074 -3.5611 -0.0106 11 6 2.4981 -4.9678 -0.0164 12 6 3.7407 -5.8606 -0.0220 13 1 4.2879 -5.7156 -0.9535 14 7 4.6034 -5.5061 1.1130 15 6 6.0153 -5.4677 0.7091 16 6 6.8795 -5.2502 1.9243 17 8 6.3695 -5.1378 3.0190 18 7 8.2192 -5.1797 1.7946 19 6 9.0056 -4.9823 2.9002 20 1 8.5515 -4.8830 3.8750 21 6 10.3868 -4.9101 2.7665 22 7 11.1404 -4.7205 3.8261 23 14 11.1722 -5.0826 1.0804 24 1 11.2901 -3.7433 0.4500 25 1 12.5227 -5.6835 1.2225 26 1 10.3281 -5.9582 0.2283 27 6 3.3166 -7.3256 0.0977 28 6 3.6002 -8.0372 1.4222 29 6 4.4247 -8.3776 0.1781 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3632 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.9868 2.1058 0.0008 34 1 4.5665 -1.2860 -0.0004 35 1 3.8495 -3.3302 -0.0111 36 1 1.9041 -5.1770 0.8734 37 1 1.9023 -5.1693 -0.9067 38 1 4.3203 -4.6283 1.5220 39 1 6.2838 -6.4125 0.2366 40 1 6.1692 -4.6518 0.0030 41 1 8.6271 -5.2693 0.9190 42 1 12.1046 -4.6704 3.7328 43 1 2.4038 -7.5957 -0.4332 44 1 4.0893 -7.4617 2.2081 45 1 2.8743 -8.7757 1.7623 46 1 4.2408 -9.3398 -0.2996 47 1 5.4559 -8.0258 0.1453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480063154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:32 Heat of formation + Delta-G solvation = -18.223471 kcal Electronic energy + Delta-G solvation = -28608.150306 eV Core-core repulsion = 24598.625005 eV Total energy + Delta-G solvation = -4009.525301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10111 -40.70608 -40.04084 -39.00583 -36.22381 -35.94388 -34.56356 -33.70190 -33.33293 -31.67489 -30.01138 -27.86487 -27.43537 -25.54452 -24.85461 -23.30046 -22.88265 -21.26062 -21.13210 -20.68990 -20.39835 -20.06284 -19.22329 -17.75004 -17.53645 -17.03679 -16.92923 -16.59528 -16.42753 -15.93836 -15.67463 -15.40014 -15.11875 -14.89108 -14.79696 -14.67800 -14.46330 -14.30283 -14.05988 -13.92095 -13.58086 -13.45517 -13.27752 -13.11104 -12.86006 -12.75923 -12.39737 -12.32263 -12.30610 -12.07553 -11.96317 -11.48025 -11.11522 -10.88869 -10.74378 -10.36977 -10.22037 -10.17639 -9.54718 -9.29914 -9.18714 -8.38967 -5.99637 0.76785 1.31742 1.36657 1.46128 1.49851 1.99866 2.17013 2.24764 2.46034 2.56513 2.67427 3.07216 3.17957 3.40765 3.74566 3.97273 3.98007 4.07841 4.13374 4.17047 4.28504 4.36360 4.39177 4.44193 4.45229 4.51337 4.62402 4.72785 4.76174 4.87915 4.92797 4.96890 5.02068 5.15370 5.17170 5.32392 5.41098 5.45971 5.55148 5.65268 5.82734 5.92837 5.96367 6.05785 6.35513 6.54869 6.62569 6.67738 6.91875 7.31937 7.43522 8.01334 8.78857 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.003284 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.936637 B = 8524.094724 C =10863.410214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.150 4.150 3 C -0.011 4.011 4 N -0.535 5.535 5 H 0.436 0.564 6 C 0.062 3.938 7 C -0.270 4.270 8 C 0.587 3.413 9 O -0.585 6.585 10 N -0.723 5.723 11 C 0.123 3.877 12 C 0.116 3.884 13 H 0.088 0.912 14 N -0.677 5.677 15 C 0.058 3.942 16 C 0.451 3.549 17 O -0.611 6.611 18 N -0.591 5.591 19 C -0.325 4.325 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.254 1.254 25 H -0.280 1.280 26 H -0.230 1.230 27 C -0.140 4.140 28 C -0.177 4.177 29 C -0.172 4.172 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.201 0.799 34 H 0.194 0.806 35 H 0.404 0.596 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.346 0.654 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.389 0.611 42 H 0.278 0.722 43 H 0.123 0.877 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.841 7.131 -18.542 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.156 4.156 3 C -0.140 4.140 4 N -0.129 5.129 5 H 0.276 0.724 6 C -0.076 4.076 7 C -0.280 4.280 8 C 0.377 3.623 9 O -0.466 6.466 10 N -0.375 5.375 11 C -0.001 4.001 12 C 0.006 3.994 13 H 0.106 0.894 14 N -0.311 5.311 15 C -0.074 4.074 16 C 0.239 3.761 17 O -0.495 6.495 18 N -0.233 5.233 19 C -0.454 4.454 20 H 0.071 0.929 21 C -0.215 4.215 22 N -0.578 5.578 23 Si 0.785 3.215 24 H -0.179 1.179 25 H -0.205 1.205 26 H -0.153 1.153 27 C -0.159 4.159 28 C -0.214 4.214 29 C -0.209 4.209 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.218 0.782 34 H 0.211 0.789 35 H 0.240 0.760 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.167 0.833 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.087 0.913 43 H 0.140 0.860 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.696 6.501 -17.473 23.739 hybrid contribution 1.629 0.839 -0.324 1.861 sum -13.067 7.340 -17.796 23.267 Atomic orbital electron populations 1.20102 0.89626 1.02269 1.01482 1.20827 0.96104 0.91240 1.07399 1.22021 0.82266 0.99975 1.09702 1.41581 1.08936 1.06451 1.55979 0.72353 1.22258 0.98281 0.84885 1.02209 1.20437 0.94348 0.92185 1.21033 1.17714 0.84901 0.85033 0.74629 1.90707 1.18823 1.84470 1.52607 1.45768 1.09741 1.06014 1.76023 1.21528 0.96823 0.79098 1.02675 1.21252 0.91870 0.93262 0.92988 0.89419 1.59910 1.00712 1.40105 1.30395 1.21859 0.88142 1.04196 0.93252 1.20959 0.82436 0.81188 0.91524 1.90572 1.73824 1.54824 1.30243 1.42023 1.05971 1.66712 1.08641 1.18975 0.89335 1.48578 0.88543 0.92868 1.26117 0.95916 0.96253 1.03190 1.69814 1.06135 1.49825 1.32038 0.85370 0.78630 0.80171 0.77360 1.17858 1.20547 1.15336 1.22293 1.00376 0.91430 1.01833 1.22847 1.03373 1.02742 0.92447 1.22951 0.96234 0.99597 1.02129 0.92538 0.90095 0.93017 0.78202 0.78881 0.75999 0.92389 0.89926 0.83289 0.87054 0.89497 0.77517 0.91266 0.85964 0.89570 0.89350 0.87864 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.98 71.24 0.71 -0.94 16 2 C -0.15 -3.27 6.35 -18.51 -0.12 -3.38 16 3 C -0.01 -0.17 11.82 83.12 0.98 0.82 16 4 N -0.53 -6.42 5.90 -194.56 -1.15 -7.57 16 5 H 0.44 2.22 8.96 -92.71 -0.83 1.39 16 6 C 0.06 1.01 11.40 83.91 0.96 1.96 16 7 C -0.27 -6.31 6.29 -19.04 -0.12 -6.43 16 8 C 0.59 15.99 7.81 86.62 0.68 16.66 16 9 O -0.58 -20.17 15.32 -4.12 -0.06 -20.24 16 10 N -0.72 -15.31 4.89 -466.52 -2.28 -17.59 16 11 C 0.12 2.57 5.17 86.38 0.45 3.02 16 12 C 0.12 2.22 2.66 44.91 0.12 2.34 16 13 H 0.09 1.31 7.63 -2.38 -0.02 1.29 16 14 N -0.68 -17.54 3.99 -495.59 -1.98 -19.52 16 15 C 0.06 1.51 5.76 85.56 0.49 2.00 16 16 C 0.45 18.81 7.84 87.66 0.69 19.49 16 17 O -0.61 -32.35 15.91 -3.05 -0.05 -32.40 16 18 N -0.59 -26.07 5.09 -306.99 -1.56 -27.64 16 19 C -0.32 -18.38 10.16 84.04 0.85 -17.52 16 20 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 21 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 22 N -0.94 -55.51 13.96 21.66 0.30 -55.21 16 23 Si 0.96 37.02 27.74 68.60 1.90 38.92 16 24 H -0.25 -9.06 7.11 99.48 0.71 -8.36 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.23 -7.31 6.52 99.48 0.65 -6.66 16 27 C -0.14 -2.74 5.69 -10.79 -0.06 -2.80 16 28 C -0.18 -4.43 9.86 30.62 0.30 -4.13 16 29 C -0.17 -3.59 10.07 30.62 0.31 -3.28 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.35 6.85 -2.39 -0.02 1.34 16 33 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.19 2.05 7.45 -2.91 -0.02 2.03 16 35 H 0.40 6.82 6.67 -92.71 -0.62 6.20 16 36 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.35 9.76 6.88 -89.69 -0.62 9.14 16 39 H 0.11 2.55 5.96 -2.39 -0.01 2.54 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.39 13.95 5.76 -92.70 -0.53 13.41 16 42 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.12 1.97 8.13 -2.39 -0.02 1.95 16 44 H 0.09 2.83 6.99 -2.39 -0.02 2.82 16 45 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.08 1.91 5.92 -2.39 -0.01 1.89 16 Total: -1.00 -85.09 387.84 0.21 -84.88 By element: Atomic # 1 Polarization: 50.57 SS G_CDS: -1.61 Total: 48.96 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.70 Total: 7.40 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -6.67 Total: -127.52 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.11 Total: -52.64 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 1.90 Total: 38.92 kcal Total: -85.09 0.21 -84.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480063154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.656 kcal (2) G-P(sol) polarization free energy of solvation -85.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds