Wall clock time and date at job start Tue Mar 31 2020 18:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34483 * 126.83660 * 2 1 4 4 N 1.36447 * 108.85936 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.84928 * 179.97438 * 4 3 2 6 6 C 1.34659 * 110.29687 * 0.27372 * 4 3 2 7 7 C 1.36772 * 108.39589 * 359.56148 * 6 4 3 8 8 C 1.47261 * 126.94219 * 180.16560 * 7 6 4 9 9 O 1.21626 * 119.99776 * 180.30441 * 8 7 6 10 10 N 1.34773 * 120.00014 * 0.30133 * 8 7 6 11 11 C 1.47024 * 125.65047 * 0.02955 * 10 8 7 12 12 C 1.54320 * 107.27378 * 178.90316 * 11 10 8 13 13 C 1.55163 * 102.93933 * 337.80612 * 12 11 10 14 14 H 1.09002 * 110.99938 * 277.42265 * 13 12 11 15 15 C 1.52998 * 111.00327 * 153.57964 * 13 12 11 16 16 N 1.46894 * 109.47333 * 174.99622 * 15 13 12 17 17 C 1.46905 * 111.00084 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47043 * 180.02562 * 17 16 15 19 19 O 1.21298 * 119.99812 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00023 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00061 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99900 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99775 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99881 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00378 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46864 * 89.99668 * 25 23 21 27 27 H 1.48498 * 109.47029 * 209.99903 * 25 23 21 28 28 H 1.48500 * 109.46771 * 330.00311 * 25 23 21 29 29 C 1.47428 * 125.64817 * 179.71607 * 10 8 7 30 30 H 1.09001 * 109.47307 * 89.96700 * 1 2 3 31 31 H 1.08995 * 109.47404 * 209.97304 * 1 2 3 32 32 H 1.09004 * 109.47205 * 329.97170 * 1 2 3 33 33 H 1.08007 * 125.56912 * 0.02973 * 3 2 1 34 34 H 1.07995 * 125.80106 * 179.69963 * 6 4 3 35 35 H 1.09006 * 109.87902 * 298.32019 * 11 10 8 36 36 H 1.08998 * 109.88403 * 59.32555 * 11 10 8 37 37 H 1.08999 * 110.72049 * 96.16465 * 12 11 10 38 38 H 1.08996 * 110.71826 * 219.26850 * 12 11 10 39 39 H 1.09004 * 109.47189 * 295.00016 * 15 13 12 40 40 H 1.09005 * 109.47530 * 54.99543 * 15 13 12 41 41 H 1.00900 * 111.00032 * 303.95355 * 16 15 13 42 42 H 1.08997 * 109.46888 * 300.00088 * 17 16 15 43 43 H 1.08996 * 109.46778 * 60.00462 * 17 16 15 44 44 H 0.97004 * 120.00184 * 0.02562 * 20 18 17 45 45 H 0.97000 * 120.00079 * 180.02562 * 24 23 21 46 46 H 1.08995 * 110.36794 * 323.00565 * 29 10 8 47 47 H 1.09000 * 110.36379 * 85.32729 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0011 6 6 3.6656 -0.6903 -0.0070 7 6 2.3864 -1.1741 -0.0008 8 6 1.9749 -2.5881 -0.0011 9 8 0.7936 -2.8776 -0.0007 10 7 2.9073 -3.5612 -0.0018 11 6 4.3628 -3.3534 -0.0018 12 6 5.0246 -4.7473 0.0254 13 6 3.9073 -5.6511 0.6103 14 1 3.8883 -5.5939 1.6986 15 6 4.0715 -7.0985 0.1423 16 7 3.0722 -7.9448 0.8079 17 6 3.1998 -9.3447 0.3813 18 6 2.1603 -10.1803 1.0829 19 8 1.3887 -9.6607 1.8613 20 7 2.0873 -11.5048 0.8447 21 6 1.1419 -12.2651 1.4834 22 1 0.4555 -11.8026 2.1771 23 6 1.0670 -13.6307 1.2381 24 7 0.1605 -14.3594 1.8499 25 14 2.2548 -14.4309 0.0387 26 1 3.4674 -14.8802 0.7686 27 1 1.5999 -15.6004 -0.6005 28 1 2.6412 -13.4480 -1.0052 29 6 2.6367 -5.0104 0.0037 30 1 -0.3634 0.0006 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5143 33 1 1.9868 2.1059 0.0005 34 1 4.5664 -1.2860 -0.0134 35 1 4.6609 -2.8190 -0.9039 36 1 4.6559 -2.7840 0.8801 37 1 5.2916 -5.0671 -0.9819 38 1 5.9013 -4.7453 0.6730 39 1 3.9299 -7.1496 -0.9373 40 1 5.0718 -7.4506 0.3945 41 1 3.1410 -7.8645 1.8113 42 1 3.0518 -9.4110 -0.6966 43 1 4.1939 -9.7126 0.6349 44 1 2.7040 -11.9203 0.2218 45 1 0.1085 -15.3128 1.6790 46 1 1.7673 -5.2316 0.6228 47 1 2.4811 -5.3712 -1.0130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480679407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:13 Heat of formation + Delta-G solvation = -10.865238 kcal Electronic energy + Delta-G solvation = -27706.707619 eV Core-core repulsion = 23697.501395 eV Total energy + Delta-G solvation = -4009.206224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55261 -39.80517 -38.46343 -37.60547 -35.43851 -33.88643 -32.67324 -32.29554 -31.61113 -30.27863 -29.43362 -27.13181 -26.78891 -25.24157 -24.03119 -22.75915 -21.86141 -20.76434 -20.25604 -19.33102 -19.03435 -18.30325 -17.96500 -16.71270 -16.49708 -15.94949 -15.66133 -15.22485 -14.86882 -14.78370 -14.43106 -14.24932 -14.13274 -13.80821 -13.69891 -13.49026 -13.14337 -12.96780 -12.86709 -12.77220 -12.66423 -12.51438 -12.34722 -12.06179 -11.83986 -11.71841 -11.58289 -11.20811 -11.15773 -11.00913 -10.88953 -10.57334 -9.94554 -9.85631 -9.54186 -8.97266 -8.66410 -8.58329 -8.55947 -8.16689 -8.10836 -6.27865 -3.79252 1.51085 2.11872 2.76765 3.01875 3.04817 3.08287 3.16840 3.43790 3.77642 3.97028 4.12785 4.25139 4.39401 4.49104 4.61236 4.68612 4.80040 4.90704 4.94918 5.04704 5.12636 5.21182 5.24509 5.29512 5.34304 5.42911 5.53246 5.55846 5.59835 5.66206 5.70474 5.77427 5.83308 5.85870 5.96334 6.03447 6.06951 6.11942 6.27304 6.54648 6.59350 7.07991 7.09356 7.49175 7.58128 7.61684 8.18180 8.26614 8.63158 8.98506 9.45771 9.86384 10.85342 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.001839 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.444638 B =15221.618482 C =16025.408515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.108 4.108 3 C -0.029 4.029 4 N -0.552 5.552 5 H 0.416 0.584 6 C 0.031 3.969 7 C -0.221 4.221 8 C 0.600 3.400 9 O -0.536 6.536 10 N -0.620 5.620 11 C 0.096 3.904 12 C -0.128 4.128 13 C -0.097 4.097 14 H 0.086 0.914 15 C 0.071 3.929 16 N -0.669 5.669 17 C 0.049 3.951 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 C 0.122 3.878 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.351 0.649 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.088 0.912 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.663 29.981 -7.263 35.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.156 4.156 4 N -0.146 5.146 5 H 0.253 0.747 6 C -0.104 4.104 7 C -0.232 4.232 8 C 0.391 3.609 9 O -0.413 6.413 10 N -0.355 5.355 11 C -0.027 4.027 12 C -0.167 4.167 13 C -0.117 4.117 14 H 0.105 0.895 15 C -0.059 4.059 16 N -0.302 5.302 17 C -0.084 4.084 18 C 0.235 3.765 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C 0.000 4.000 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.186 0.814 34 H 0.198 0.802 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.171 0.829 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.899 30.273 -7.142 34.488 hybrid contribution 2.248 -0.847 -0.536 2.462 sum 17.147 29.426 -7.679 34.912 Atomic orbital electron populations 1.20212 0.89208 1.02729 1.02058 1.20594 0.95749 0.90274 1.04841 1.21594 0.82474 0.99214 1.12313 1.41544 1.08267 1.06763 1.58030 0.74725 1.22662 0.99205 0.83791 1.04773 1.20355 0.92735 0.92659 1.17430 1.17054 0.84477 0.83374 0.75978 1.90787 1.16627 1.83334 1.50599 1.48357 1.05850 1.06980 1.74331 1.22264 0.81263 0.98178 1.00985 1.22703 0.98020 0.93509 1.02419 1.22315 0.94311 0.94051 1.00979 0.89518 1.21900 0.93257 0.91073 0.99678 1.60036 1.50539 1.06528 1.13074 1.21695 0.97170 0.88739 1.00773 1.19726 0.87783 0.82473 0.86506 1.90579 1.44014 1.71454 1.38376 1.42208 1.32575 1.07217 1.41117 1.19441 1.11152 0.89871 1.22834 0.86274 1.25042 0.97283 0.96064 0.97841 1.69626 1.33443 1.06980 1.42146 0.86663 0.81391 0.80016 0.81259 1.19719 1.20194 1.19478 1.22162 0.98560 0.77757 1.01491 0.91769 0.90156 0.92358 0.81437 0.80208 0.91328 0.91290 0.90177 0.89874 0.90689 0.94908 0.82910 0.89471 0.93791 0.79724 0.91649 0.89334 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.98 36.01 0.36 -0.52 16 2 C -0.11 -1.14 6.35 -102.54 -0.65 -1.79 16 3 C -0.03 -0.20 11.82 -16.83 -0.20 -0.40 16 4 N -0.55 -2.89 5.90 -12.85 -0.08 -2.97 16 5 H 0.42 0.62 8.96 -40.82 -0.37 0.25 16 6 C 0.03 0.22 10.42 -16.84 -0.18 0.05 16 7 C -0.22 -2.48 6.26 -103.35 -0.65 -3.13 16 8 C 0.60 8.43 7.84 -12.59 -0.10 8.33 16 9 O -0.54 -9.69 15.58 5.25 0.08 -9.61 16 10 N -0.62 -7.06 3.33 -171.99 -0.57 -7.63 16 11 C 0.10 0.65 5.01 -3.06 -0.02 0.64 16 12 C -0.13 -0.79 6.42 -24.89 -0.16 -0.95 16 13 C -0.10 -0.91 3.18 -88.59 -0.28 -1.19 16 14 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.07 0.74 5.14 -3.83 -0.02 0.72 16 16 N -0.67 -10.04 6.07 -115.06 -0.70 -10.74 16 17 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 18 C 0.45 10.29 7.82 -10.99 -0.09 10.21 16 19 O -0.56 -15.37 15.78 5.54 0.09 -15.28 16 20 N -0.59 -14.23 5.09 -10.96 -0.06 -14.28 16 21 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 22 H 0.12 3.91 7.39 -52.49 -0.39 3.53 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.07 13.96 55.50 0.77 -25.30 16 25 Si 0.88 19.50 27.74 -169.99 -4.71 14.79 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 29 C 0.12 1.50 6.32 -2.65 -0.02 1.48 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.04 6.85 -51.93 -0.36 0.68 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 34 H 0.18 0.75 4.42 -52.49 -0.23 0.52 16 35 H 0.07 0.35 7.02 -51.93 -0.36 -0.01 16 36 H 0.07 0.38 6.88 -51.93 -0.36 0.02 16 37 H 0.08 0.44 8.04 -51.93 -0.42 0.02 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.76 7.96 -51.93 -0.41 0.34 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.35 5.49 8.43 -39.29 -0.33 5.15 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.09 1.37 8.04 -51.93 -0.42 0.95 16 47 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -38.28 383.57 -8.50 -46.78 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.84 Total: 12.09 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -2.27 Total: 6.37 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.63 Total: -60.91 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.17 Total: -24.89 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.28 -8.50 -46.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480679407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.913 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds