Wall clock time and date at job start Tue Mar 31 2020 18:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34483 * 126.83660 * 2 1 4 4 N 1.36447 * 108.85936 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.84928 * 179.97438 * 4 3 2 6 6 C 1.34659 * 110.29687 * 0.27372 * 4 3 2 7 7 C 1.36772 * 108.39589 * 359.56148 * 6 4 3 8 8 C 1.47261 * 126.94219 * 180.16560 * 7 6 4 9 9 O 1.21626 * 119.99776 * 180.30441 * 8 7 6 10 10 N 1.34773 * 120.00014 * 0.30133 * 8 7 6 11 11 C 1.47024 * 125.65047 * 0.02955 * 10 8 7 12 12 C 1.54320 * 107.27378 * 178.90316 * 11 10 8 13 13 C 1.55163 * 102.93933 * 337.80612 * 12 11 10 14 14 H 1.09002 * 110.99938 * 277.42265 * 13 12 11 15 15 C 1.52998 * 111.00327 * 153.57964 * 13 12 11 16 16 N 1.46894 * 109.47333 * 174.99622 * 15 13 12 17 17 C 1.46905 * 111.00084 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47043 * 180.02562 * 17 16 15 19 19 O 1.21298 * 119.99812 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00023 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00061 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99900 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99775 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99881 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00378 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46864 * 89.99668 * 25 23 21 27 27 H 1.48498 * 109.47029 * 209.99903 * 25 23 21 28 28 H 1.48500 * 109.46771 * 330.00311 * 25 23 21 29 29 C 1.47428 * 125.64817 * 179.71607 * 10 8 7 30 30 H 1.09001 * 109.47307 * 89.96700 * 1 2 3 31 31 H 1.08995 * 109.47404 * 209.97304 * 1 2 3 32 32 H 1.09004 * 109.47205 * 329.97170 * 1 2 3 33 33 H 1.08007 * 125.56912 * 0.02973 * 3 2 1 34 34 H 1.07995 * 125.80106 * 179.69963 * 6 4 3 35 35 H 1.09006 * 109.87902 * 298.32019 * 11 10 8 36 36 H 1.08998 * 109.88403 * 59.32555 * 11 10 8 37 37 H 1.08999 * 110.72049 * 96.16465 * 12 11 10 38 38 H 1.08996 * 110.71826 * 219.26850 * 12 11 10 39 39 H 1.09004 * 109.47189 * 295.00016 * 15 13 12 40 40 H 1.09005 * 109.47530 * 54.99543 * 15 13 12 41 41 H 1.00900 * 111.00032 * 303.95355 * 16 15 13 42 42 H 1.08997 * 109.46888 * 300.00088 * 17 16 15 43 43 H 1.08996 * 109.46778 * 60.00462 * 17 16 15 44 44 H 0.97004 * 120.00184 * 0.02562 * 20 18 17 45 45 H 0.97000 * 120.00079 * 180.02562 * 24 23 21 46 46 H 1.08995 * 110.36794 * 323.00565 * 29 10 8 47 47 H 1.09000 * 110.36379 * 85.32729 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0011 6 6 3.6656 -0.6903 -0.0070 7 6 2.3864 -1.1741 -0.0008 8 6 1.9749 -2.5881 -0.0011 9 8 0.7936 -2.8776 -0.0007 10 7 2.9073 -3.5612 -0.0018 11 6 4.3628 -3.3534 -0.0018 12 6 5.0246 -4.7473 0.0254 13 6 3.9073 -5.6511 0.6103 14 1 3.8883 -5.5939 1.6986 15 6 4.0715 -7.0985 0.1423 16 7 3.0722 -7.9448 0.8079 17 6 3.1998 -9.3447 0.3813 18 6 2.1603 -10.1803 1.0829 19 8 1.3887 -9.6607 1.8613 20 7 2.0873 -11.5048 0.8447 21 6 1.1419 -12.2651 1.4834 22 1 0.4555 -11.8026 2.1771 23 6 1.0670 -13.6307 1.2381 24 7 0.1605 -14.3594 1.8499 25 14 2.2548 -14.4309 0.0387 26 1 3.4674 -14.8802 0.7686 27 1 1.5999 -15.6004 -0.6005 28 1 2.6412 -13.4480 -1.0052 29 6 2.6367 -5.0104 0.0037 30 1 -0.3634 0.0006 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5143 33 1 1.9868 2.1059 0.0005 34 1 4.5664 -1.2860 -0.0134 35 1 4.6609 -2.8190 -0.9039 36 1 4.6559 -2.7840 0.8801 37 1 5.2916 -5.0671 -0.9819 38 1 5.9013 -4.7453 0.6730 39 1 3.9299 -7.1496 -0.9373 40 1 5.0718 -7.4506 0.3945 41 1 3.1410 -7.8645 1.8113 42 1 3.0518 -9.4110 -0.6966 43 1 4.1939 -9.7126 0.6349 44 1 2.7040 -11.9203 0.2218 45 1 0.1085 -15.3128 1.6790 46 1 1.7673 -5.2316 0.6228 47 1 2.4811 -5.3712 -1.0130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480679407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:12 Heat of formation + Delta-G solvation = -43.028783 kcal Electronic energy + Delta-G solvation = -27708.102335 eV Core-core repulsion = 23697.501395 eV Total energy + Delta-G solvation = -4010.600940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17851 -40.64625 -40.24307 -38.62621 -36.64471 -35.85977 -33.76825 -33.34583 -33.21124 -30.96094 -30.30053 -28.46530 -27.47356 -26.57550 -25.32796 -23.78744 -22.52141 -21.60394 -21.20106 -20.96823 -20.22420 -19.71747 -18.59746 -17.85875 -17.51132 -17.12029 -17.03057 -16.60707 -16.14160 -15.72550 -15.59286 -15.26523 -15.12623 -14.86549 -14.75617 -14.57508 -14.28413 -14.16756 -14.04946 -13.79699 -13.65195 -13.60298 -13.40761 -13.27205 -13.04937 -12.79284 -12.60585 -12.41630 -12.32380 -11.99257 -11.92631 -11.84101 -11.54931 -11.50683 -10.90695 -10.43453 -10.25001 -9.78991 -9.43280 -9.24992 -9.18566 -8.41204 -6.02629 0.78608 1.30546 1.36246 1.45590 1.48560 1.96701 2.03110 2.23720 2.48643 2.54526 2.74635 3.15241 3.34874 3.66024 3.70127 3.90924 3.95112 4.09409 4.18226 4.24823 4.30900 4.41077 4.42776 4.49058 4.55380 4.60511 4.65394 4.68895 4.76784 4.83407 4.86831 4.90519 4.95771 5.03447 5.10738 5.19771 5.31131 5.35335 5.46862 5.53060 5.82190 5.91378 5.96693 6.09254 6.42409 6.60232 6.63029 6.72188 6.88366 7.30545 7.40014 7.97784 8.76729 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.001839 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.444638 B =15221.618482 C =16025.408515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.157 4.157 3 C -0.006 4.006 4 N -0.532 5.532 5 H 0.440 0.560 6 C 0.062 3.938 7 C -0.269 4.269 8 C 0.585 3.415 9 O -0.602 6.602 10 N -0.621 5.621 11 C 0.086 3.914 12 C -0.113 4.113 13 C -0.090 4.090 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.697 5.697 17 C 0.065 3.935 18 C 0.445 3.555 19 O -0.618 6.618 20 N -0.591 5.591 21 C -0.331 4.331 22 H 0.051 0.949 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.969 3.031 26 H -0.254 1.254 27 H -0.276 1.276 28 H -0.230 1.230 29 C 0.119 3.881 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.202 0.798 34 H 0.215 0.785 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.343 0.657 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.391 0.609 45 H 0.279 0.721 46 H 0.038 0.962 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.870 31.813 -9.805 40.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.163 4.163 3 C -0.134 4.134 4 N -0.127 5.127 5 H 0.281 0.719 6 C -0.076 4.076 7 C -0.279 4.279 8 C 0.379 3.621 9 O -0.485 6.485 10 N -0.353 5.353 11 C -0.035 4.035 12 C -0.151 4.151 13 C -0.110 4.110 14 H 0.097 0.903 15 C -0.054 4.054 16 N -0.329 5.329 17 C -0.067 4.067 18 C 0.233 3.767 19 O -0.502 6.502 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.070 0.930 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.789 3.211 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.153 1.153 29 C -0.004 4.004 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.219 0.781 34 H 0.232 0.768 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.162 0.838 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.205 32.157 -9.703 39.723 hybrid contribution 0.238 -1.295 0.352 1.363 sum 21.444 30.863 -9.352 38.727 Atomic orbital electron populations 1.20090 0.90414 1.01828 1.01382 1.20815 0.95844 0.91707 1.07957 1.21955 0.82525 0.99629 1.09331 1.41594 1.08640 1.06509 1.56000 0.71918 1.22985 0.98492 0.84588 1.01541 1.20333 0.95062 0.91189 1.21358 1.17720 0.84078 0.85128 0.75220 1.90735 1.19392 1.84462 1.53914 1.48455 1.07889 1.05941 1.73055 1.22661 0.78028 0.99582 1.03222 1.22729 0.97245 0.91423 1.03688 1.22246 0.94065 0.94188 1.00458 0.90326 1.21998 0.93367 0.90385 0.99631 1.60030 1.53466 1.06493 1.12958 1.21610 0.95981 0.88196 1.00925 1.21150 0.87940 0.82381 0.85226 1.90558 1.46448 1.72519 1.40703 1.42024 1.32195 1.07539 1.41490 1.19008 1.12271 0.91128 1.23616 0.93038 1.26185 0.99482 0.95976 0.99972 1.69819 1.35921 1.07717 1.44199 0.85311 0.78212 0.79003 0.78623 1.17854 1.20099 1.15343 1.22065 0.98716 0.79332 1.00245 0.92448 0.94083 0.90078 0.78141 0.76849 0.88686 0.89230 0.88584 0.86843 0.89803 0.91834 0.83806 0.86954 0.89873 0.77355 0.91143 0.94339 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 9.98 71.24 0.71 -1.12 16 2 C -0.16 -3.33 6.35 -18.51 -0.12 -3.44 16 3 C -0.01 -0.07 11.82 83.12 0.98 0.91 16 4 N -0.53 -3.39 5.90 -194.56 -1.15 -4.54 16 5 H 0.44 -1.01 8.96 -92.71 -0.83 -1.85 16 6 C 0.06 0.67 10.42 83.92 0.87 1.55 16 7 C -0.27 -6.03 6.26 -19.04 -0.12 -6.15 16 8 C 0.59 17.71 7.84 86.62 0.68 18.39 16 9 O -0.60 -24.74 15.58 -4.11 -0.06 -24.80 16 10 N -0.62 -14.31 3.33 -816.29 -2.72 -17.03 16 11 C 0.09 0.87 5.01 86.73 0.43 1.31 16 12 C -0.11 -0.88 6.42 31.78 0.20 -0.67 16 13 C -0.09 -1.54 3.18 -9.48 -0.03 -1.57 16 14 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 15 C 0.07 1.34 5.14 86.30 0.44 1.79 16 16 N -0.70 -20.32 6.07 -517.93 -3.14 -23.46 16 17 C 0.07 1.96 6.17 85.56 0.53 2.49 16 18 C 0.44 20.63 7.82 87.66 0.69 21.32 16 19 O -0.62 -35.78 15.78 -3.08 -0.05 -35.83 16 20 N -0.59 -28.43 5.09 -306.98 -1.56 -30.00 16 21 C -0.33 -19.93 10.16 84.04 0.85 -19.08 16 22 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 23 C -0.02 -1.01 5.50 84.92 0.47 -0.54 16 24 N -0.94 -57.63 13.96 21.66 0.30 -57.33 16 25 Si 0.97 39.19 27.74 68.60 1.90 41.09 16 26 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 27 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 28 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 29 C 0.12 3.10 6.32 86.78 0.55 3.65 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.24 6.85 -2.39 -0.02 1.22 16 32 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.20 0.84 8.06 -2.91 -0.02 0.81 16 34 H 0.22 0.67 4.42 -2.91 -0.01 0.66 16 35 H 0.10 0.52 7.02 -2.38 -0.02 0.50 16 36 H 0.09 0.57 6.88 -2.39 -0.02 0.56 16 37 H 0.10 0.52 8.04 -2.39 -0.02 0.50 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.08 1.39 7.96 -2.38 -0.02 1.37 16 40 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.34 10.83 8.43 -89.69 -0.76 10.08 16 42 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.39 15.35 5.76 -92.71 -0.53 14.81 16 45 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.04 1.35 8.04 -2.39 -0.02 1.33 16 47 H 0.06 1.63 7.90 -2.39 -0.02 1.61 16 Total: -1.00 -98.92 383.57 -0.48 -99.40 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -1.15 Total: 33.67 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 7.14 Total: 18.82 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -8.27 Total: -132.35 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -0.11 Total: -60.63 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.90 Total: 41.09 kcal Total: -98.92 -0.48 -99.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480679407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.376 kcal (2) G-P(sol) polarization free energy of solvation -98.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds