Wall clock time and date at job start Tue Mar 31 2020 17:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32168 * 119.14099 * 2 1 4 4 C 1.32362 * 120.60434 * 180.30744 * 3 2 1 5 5 C 1.47501 * 120.51196 * 179.69760 * 4 3 2 6 6 O 1.21594 * 120.00050 * 179.72720 * 5 4 3 7 7 N 1.34778 * 119.99780 * 359.71679 * 5 4 3 8 8 C 1.46497 * 120.00161 * 180.02562 * 7 5 4 9 9 H 1.09007 * 110.01565 * 33.61391 * 8 7 5 10 10 C 1.54266 * 110.03425 * 272.17433 * 8 7 5 11 11 C 1.54887 * 104.19663 * 264.32364 * 10 8 7 12 12 C 1.54896 * 102.74695 * 322.05537 * 11 10 8 13 13 H 1.08996 * 110.59877 * 279.20672 * 12 11 10 14 14 C 1.53001 * 110.48395 * 156.62141 * 12 11 10 15 15 N 1.46490 * 109.47264 * 70.22508 * 14 12 11 16 16 C 1.36935 * 120.00121 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46685 * 269.99637 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99716 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00435 * 20 18 16 24 24 C 1.53878 * 110.03492 * 155.00499 * 8 7 5 25 25 C 1.46675 * 118.97950 * 359.42287 * 4 3 2 26 26 O 1.21859 * 120.78387 * 180.29369 * 25 4 3 27 27 N 1.35155 * 118.43295 * 0.27425 * 25 4 3 28 28 H 0.96996 * 120.36580 * 180.02562 * 27 25 4 29 29 C 1.34895 * 119.26160 * 0.02562 * 27 25 4 30 30 C 1.50694 * 119.49678 * 180.02562 * 29 27 25 31 31 H 1.09002 * 109.47287 * 270.29903 * 1 2 3 32 32 H 1.08996 * 109.47477 * 30.29773 * 1 2 3 33 33 H 1.08997 * 109.46887 * 150.30000 * 1 2 3 34 34 H 0.97003 * 120.00277 * 0.02562 * 7 5 4 35 35 H 1.09001 * 110.49014 * 23.00357 * 10 8 7 36 36 H 1.09003 * 110.48847 * 145.51438 * 10 8 7 37 37 H 1.09003 * 110.75441 * 203.74886 * 11 10 8 38 38 H 1.08995 * 110.76068 * 80.37027 * 11 10 8 39 39 H 1.09003 * 109.46836 * 310.22215 * 14 12 11 40 40 H 1.08999 * 109.47071 * 190.23254 * 14 12 11 41 41 H 0.97000 * 120.00577 * 0.02562 * 15 14 12 42 42 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 43 43 H 1.08997 * 110.02979 * 0.02562 * 24 8 7 44 44 H 1.09002 * 110.07138 * 238.59667 * 24 8 7 45 45 H 1.09001 * 109.47290 * 359.97438 * 30 29 27 46 46 H 1.08999 * 109.47266 * 119.99766 * 30 29 27 47 47 H 1.08999 * 109.47337 * 239.99814 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 -0.0061 5 6 4.1899 2.4777 -0.0128 6 8 5.4057 2.4979 -0.0134 7 7 3.4967 3.6335 -0.0185 8 6 4.2079 4.9142 -0.0257 9 1 5.1344 4.8233 -0.5928 10 6 4.5134 5.3572 1.4200 11 6 3.3493 6.3141 1.7782 12 6 3.1137 7.0774 0.4511 13 1 3.8398 7.8823 0.3376 14 6 1.6887 7.6319 0.3980 15 7 1.5543 8.7261 1.3627 16 6 0.3587 9.3806 1.4935 17 1 -0.4854 9.0898 0.8858 18 6 0.2314 10.4179 2.4072 19 7 1.2602 10.7726 3.1475 20 14 -1.4000 11.3101 2.5861 21 1 -1.4395 12.4618 1.6493 22 1 -2.5116 10.3773 2.2710 23 1 -1.5455 11.8009 3.9801 24 6 3.3179 6.0079 -0.6418 25 6 4.2170 -0.0763 0.0000 26 8 5.4356 -0.0835 0.0000 27 7 3.5184 -1.2333 0.0061 28 1 3.9814 -2.0856 0.0106 29 6 2.1702 -1.1895 0.0057 30 6 1.3860 -2.4763 0.0130 31 1 -0.3634 0.0054 1.0277 32 1 -0.3634 0.8872 -0.5184 33 1 -0.3633 -0.8926 -0.5092 34 1 2.5268 3.6174 -0.0178 35 1 4.5198 4.4969 2.0894 36 1 5.4682 5.8812 1.4648 37 1 3.6441 7.0009 2.5716 38 1 2.4604 5.7514 2.0632 39 1 0.9814 6.8403 0.6455 40 1 1.4808 8.0042 -0.6051 41 1 2.3125 8.9877 1.9083 42 1 2.1072 10.3090 3.0548 43 1 2.3567 5.5859 -0.9350 44 1 3.8121 6.4485 -1.5077 45 1 2.0745 -3.3214 0.0174 46 1 0.7581 -2.5141 0.9032 47 1 0.7582 -2.5243 -0.8767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486204417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:43 Heat of formation + Delta-G solvation = -60.829382 kcal Electronic energy + Delta-G solvation = -28396.763711 eV Core-core repulsion = 24385.390879 eV Total energy + Delta-G solvation = -4011.372832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.91120 -40.96603 -39.35421 -39.02023 -36.73607 -36.61696 -34.81339 -34.07712 -32.80267 -30.26371 -30.07375 -29.05162 -27.73148 -25.98928 -25.62876 -24.44409 -24.12800 -22.26538 -21.25456 -20.93919 -19.90564 -19.53183 -19.25398 -18.02639 -17.54578 -17.35723 -17.07320 -16.71397 -16.49680 -15.78047 -15.64852 -15.37970 -15.07544 -14.97027 -14.95709 -14.83755 -14.41656 -14.09239 -13.88271 -13.84016 -13.63090 -12.89422 -12.83272 -12.74138 -12.71031 -12.67929 -12.51613 -12.43025 -12.35781 -12.08099 -11.95120 -11.82884 -11.70652 -11.60079 -11.38626 -11.17720 -10.89080 -10.57194 -10.15055 -9.11606 -9.07717 -8.38327 -5.31257 -0.99643 0.47357 1.22497 1.49850 1.59331 1.70744 1.84845 2.10397 2.51349 2.73429 2.89179 2.98419 3.38463 3.41384 3.50464 3.51954 3.71905 3.81952 3.91391 3.99856 4.34787 4.43626 4.44439 4.51837 4.53563 4.60206 4.62576 4.67490 4.69715 4.85414 4.88255 4.93233 4.94293 5.02023 5.06455 5.07388 5.14701 5.19514 5.23989 5.28481 5.44174 5.48402 5.55222 5.61015 6.28434 6.50253 6.51241 6.60134 7.12295 7.14381 8.03386 8.14663 9.14055 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.002307 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.381092 B =12135.812384 C =13474.670152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.050 4.050 3 N -0.341 5.341 4 C -0.065 4.065 5 C 0.579 3.421 6 O -0.561 6.561 7 N -0.693 5.693 8 C 0.147 3.853 9 H 0.086 0.914 10 C -0.125 4.125 11 C -0.105 4.105 12 C -0.091 4.091 13 H 0.070 0.930 14 C 0.166 3.834 15 N -0.757 5.757 16 C -0.333 4.333 17 H 0.067 0.933 18 C -0.108 4.108 19 N -0.977 5.977 20 Si 1.132 2.868 21 H -0.285 1.285 22 H -0.271 1.271 23 H -0.294 1.294 24 C -0.108 4.108 25 C 0.490 3.510 26 O -0.540 6.540 27 N -0.564 5.564 28 H 0.438 0.562 29 C 0.202 3.798 30 C -0.132 4.132 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.414 0.586 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.022 0.978 40 H 0.019 0.981 41 H 0.360 0.640 42 H 0.243 0.757 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.127 0.873 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -34.113 -9.614 35.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.181 4.181 3 N -0.059 5.059 4 C -0.226 4.226 5 C 0.365 3.635 6 O -0.438 6.438 7 N -0.346 5.346 8 C 0.042 3.958 9 H 0.104 0.896 10 C -0.163 4.163 11 C -0.143 4.143 12 C -0.110 4.110 13 H 0.089 0.911 14 C 0.040 3.960 15 N -0.401 5.401 16 C -0.464 4.464 17 H 0.085 0.915 18 C -0.299 4.299 19 N -0.625 5.625 20 Si 0.956 3.044 21 H -0.211 1.211 22 H -0.196 1.196 23 H -0.220 1.220 24 C -0.146 4.146 25 C 0.285 3.715 26 O -0.418 6.418 27 N -0.199 5.199 28 H 0.282 0.718 29 C 0.083 3.917 30 C -0.189 4.189 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.252 0.748 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.192 0.808 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.120 0.880 46 H 0.145 0.855 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.669 -32.159 -8.986 33.591 hybrid contribution 1.838 -1.736 -0.367 2.555 sum -1.831 -33.894 -9.352 35.209 Atomic orbital electron populations 1.20708 0.84063 1.05235 1.04261 1.20924 0.99683 0.85280 1.12167 1.67426 1.07391 1.31865 0.99225 1.23213 0.89563 0.92982 1.16835 1.17423 0.86171 0.83364 0.76589 1.90835 1.14389 1.87406 1.51217 1.45893 1.10965 1.04237 1.73487 1.21588 0.95876 0.81916 0.96386 0.89628 1.22710 0.98855 0.98775 0.95991 1.22392 0.97889 0.97205 0.96825 1.22066 0.96170 0.97311 0.95429 0.91117 1.20778 0.94689 0.88966 0.91544 1.42603 1.11231 1.39852 1.46446 1.20439 0.91158 1.14578 1.20219 0.91512 1.27270 1.07766 0.99021 0.95865 1.70960 1.02558 1.45127 1.43900 0.82579 0.70720 0.75139 0.75945 1.21147 1.19625 1.22003 1.22339 1.00428 0.93981 0.97858 1.19082 0.87871 0.85136 0.79419 1.91023 1.13546 1.86173 1.51015 1.43752 1.07335 1.11564 1.57260 0.71790 1.22499 0.82530 1.00966 0.85718 1.21608 1.00932 0.88610 1.07707 0.89726 0.91137 0.86922 0.74798 0.92379 0.90290 0.93052 0.92082 0.96022 0.96281 0.80793 0.94628 0.89633 0.89027 0.88000 0.85454 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 9.65 71.24 0.69 0.34 16 2 C -0.05 -0.55 6.70 42.03 0.28 -0.27 16 3 N -0.34 -6.84 9.57 -169.25 -1.62 -8.46 16 4 C -0.06 -1.72 6.96 43.71 0.30 -1.42 16 5 C 0.58 18.56 7.80 86.69 0.68 19.24 16 6 O -0.56 -22.64 15.16 15.57 0.24 -22.41 16 7 N -0.69 -18.79 5.02 -442.29 -2.22 -21.01 16 8 C 0.15 4.03 3.25 45.72 0.15 4.18 16 9 H 0.09 2.49 7.56 -2.38 -0.02 2.48 16 10 C -0.12 -3.67 6.54 31.67 0.21 -3.46 16 11 C -0.11 -3.45 6.19 31.89 0.20 -3.25 16 12 C -0.09 -2.96 2.89 -9.72 -0.03 -2.98 16 13 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 14 C 0.17 6.77 5.54 86.38 0.48 7.24 16 15 N -0.76 -39.41 5.49 -343.47 -1.89 -41.30 16 16 C -0.33 -19.19 9.99 84.03 0.84 -18.35 16 17 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 18 C -0.11 -6.44 5.50 84.86 0.47 -5.97 16 19 N -0.98 -62.66 13.70 21.65 0.30 -62.36 16 20 Si 1.13 52.76 29.92 68.60 2.05 54.81 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 24 C -0.11 -2.76 6.14 31.32 0.19 -2.57 16 25 C 0.49 12.38 7.93 86.39 0.68 13.07 16 26 O -0.54 -18.88 16.40 14.72 0.24 -18.64 16 27 N -0.56 -6.48 5.29 -301.76 -1.60 -8.07 16 28 H 0.44 2.17 8.64 -92.71 -0.80 1.36 16 29 C 0.20 1.16 6.78 41.61 0.28 1.44 16 30 C -0.13 0.79 8.83 71.23 0.63 1.42 16 31 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.11 -0.39 6.43 -2.39 -0.02 -0.41 16 34 H 0.41 9.90 7.68 -92.71 -0.71 9.19 16 35 H 0.06 1.80 8.04 -2.39 -0.02 1.78 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 2.06 7.96 -2.39 -0.02 2.04 16 39 H 0.02 0.88 8.02 -2.39 -0.02 0.87 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.36 19.50 6.47 -92.71 -0.60 18.90 16 42 H 0.24 15.60 6.77 -92.71 -0.63 14.97 16 43 H 0.09 2.03 7.31 -2.39 -0.02 2.01 16 44 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.10 -0.91 7.90 -2.39 -0.02 -0.93 16 46 H 0.13 -1.10 8.09 -2.39 -0.02 -1.11 16 47 H 0.13 -1.24 7.37 -2.39 -0.02 -1.26 16 Total: -1.00 -91.61 385.61 0.61 -91.01 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.94 Total: 27.77 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.05 Total: 8.65 kcal Atomic # 7 Polarization: -134.17 SS G_CDS: -7.03 Total: -141.19 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: 0.48 Total: -41.05 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.05 Total: 54.81 kcal Total: -91.61 0.61 -91.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486204417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.176 kcal (2) G-P(sol) polarization free energy of solvation -91.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds