Wall clock time and date at job start Tue Mar 31 2020 17:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32163 * 119.14331 * 2 1 4 4 C 1.32364 * 120.60675 * 180.02562 * 3 2 1 5 5 C 1.47501 * 120.51227 * 179.72572 * 4 3 2 6 6 O 1.21603 * 120.00164 * 180.02562 * 5 4 3 7 7 N 1.34772 * 120.00047 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00154 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.01899 * 33.61016 * 8 7 5 10 10 C 1.54270 * 110.03570 * 272.16802 * 8 7 5 11 11 C 1.54890 * 104.19652 * 217.10808 * 10 8 7 12 12 C 1.54885 * 102.75197 * 37.94119 * 11 10 8 13 13 H 1.08994 * 110.48742 * 80.73003 * 12 11 10 14 14 C 1.52996 * 110.59948 * 203.32686 * 12 11 10 15 15 N 1.46502 * 109.46843 * 289.83853 * 14 12 11 16 16 C 1.36942 * 120.00007 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99813 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00126 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99951 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00076 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47033 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47379 * 120.00041 * 20 18 16 23 23 H 1.48503 * 109.47234 * 240.00159 * 20 18 16 24 24 C 1.53878 * 110.03240 * 154.99995 * 8 7 5 25 25 C 1.46680 * 118.97961 * 0.02562 * 4 3 2 26 26 O 1.21861 * 120.78370 * 180.02562 * 25 4 3 27 27 N 1.35153 * 118.43264 * 359.97438 * 25 4 3 28 28 H 0.96994 * 120.37189 * 179.97438 * 27 25 4 29 29 C 1.34895 * 119.25912 * 0.02562 * 27 25 4 30 30 C 1.50710 * 119.49679 * 180.02562 * 29 27 25 31 31 H 1.08999 * 109.46685 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.46864 * 120.00131 * 1 2 3 33 33 H 1.09001 * 109.47256 * 240.00567 * 1 2 3 34 34 H 0.97003 * 120.00064 * 0.02562 * 7 5 4 35 35 H 1.09007 * 110.47982 * 335.78370 * 10 8 7 36 36 H 1.08993 * 110.48597 * 98.42173 * 10 8 7 37 37 H 1.09003 * 110.75121 * 279.62599 * 11 10 8 38 38 H 1.09003 * 110.75382 * 156.26074 * 11 10 8 39 39 H 1.08998 * 109.47493 * 49.83741 * 14 12 11 40 40 H 1.08998 * 109.47492 * 169.84040 * 14 12 11 41 41 H 0.96996 * 119.99933 * 0.02562 * 15 14 12 42 42 H 0.96997 * 120.00409 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.03214 * 238.56889 * 24 8 7 44 44 H 1.08998 * 110.03307 * 0.02562 * 24 8 7 45 45 H 1.08994 * 109.47143 * 269.97572 * 30 29 27 46 46 H 1.08998 * 109.46591 * 29.97523 * 30 29 27 47 47 H 1.08999 * 109.46706 * 149.97561 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1881 -0.0005 5 6 4.1901 2.4776 -0.0066 6 8 5.4059 2.4978 -0.0075 7 7 3.4969 3.6334 -0.0122 8 6 4.2082 4.9141 -0.0188 9 1 5.1349 4.8233 -0.5855 10 6 4.5132 5.3568 1.4272 11 6 4.3294 6.8945 1.4004 12 6 3.1139 7.0772 0.4581 13 1 2.1833 6.8986 0.9968 14 6 3.1151 8.4783 -0.1565 15 7 2.8010 9.4659 0.8789 16 6 2.7445 10.7968 0.5612 17 1 2.9320 11.1183 -0.4527 18 6 2.4475 11.7327 1.5423 19 7 2.2196 11.3409 2.7781 20 14 2.3712 13.5480 1.1090 21 1 2.6645 13.7248 -0.3360 22 1 1.0137 14.0714 1.4067 23 1 3.3753 14.2913 1.9119 24 6 3.3186 6.0080 -0.6350 25 6 4.2171 -0.0764 -0.0016 26 8 5.4357 -0.0837 -0.0017 27 7 3.5185 -1.2334 -0.0016 28 1 3.9813 -2.0858 -0.0027 29 6 2.1702 -1.1895 -0.0011 30 6 1.3859 -2.4764 -0.0004 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 -0.3634 -0.5137 0.8900 34 1 2.5270 3.6173 -0.0119 35 1 3.8085 4.9004 2.1224 36 1 5.5374 5.0995 1.6969 37 1 5.2135 7.3820 0.9895 38 1 4.1059 7.2742 2.3975 39 1 4.0989 8.6908 -0.5748 40 1 2.3657 8.5292 -0.9464 41 1 2.6330 9.1772 1.7896 42 1 2.0123 11.9948 3.4638 43 1 3.8139 6.4486 -1.5002 44 1 2.3574 5.5861 -0.9288 45 1 1.1960 -2.7867 -1.0279 46 1 1.9572 -3.2498 0.5130 47 1 0.4373 -2.3234 0.5142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486204421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:54 Heat of formation + Delta-G solvation = -31.434683 kcal Electronic energy + Delta-G solvation = -28087.565151 eV Core-core repulsion = 24077.466969 eV Total energy + Delta-G solvation = -4010.098182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.19187 -39.78955 -38.39775 -37.81693 -35.89579 -34.72287 -33.70122 -33.11913 -31.02441 -29.78449 -28.69131 -27.95867 -26.86911 -25.13027 -24.42921 -23.44997 -22.09490 -21.17179 -20.20648 -19.56848 -19.20127 -18.79128 -17.17637 -16.96802 -16.69738 -16.35568 -16.07893 -15.02028 -14.79895 -14.72505 -14.48657 -14.42372 -14.15119 -13.83064 -13.72612 -13.57118 -13.47893 -13.31257 -12.94170 -12.72893 -12.52954 -12.32301 -12.09675 -11.89464 -11.67027 -11.61096 -11.22516 -11.00321 -10.81709 -10.63117 -10.49272 -10.36686 -10.20195 -10.12654 -9.87084 -9.69487 -9.60149 -8.98840 -8.80346 -8.45907 -6.83657 -5.70326 -2.98016 -0.32953 1.21198 1.90735 2.41605 2.99730 3.38150 3.43657 3.47483 3.53045 3.55346 3.75006 3.77956 4.13444 4.54796 4.59754 4.63915 4.73561 4.83912 4.89877 4.96430 5.04040 5.11083 5.16733 5.34280 5.56416 5.61278 5.64882 5.72596 5.75359 5.77261 5.83707 5.88517 5.99149 6.02018 6.20925 6.27477 6.34655 6.41506 6.63204 6.65583 6.71014 6.89657 7.00681 7.03577 7.30722 7.53997 7.76667 8.19187 8.49174 9.60159 10.19992 10.54647 11.52827 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.001962 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.522667 B =14268.812055 C =15006.252928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.030 4.030 3 N -0.349 5.349 4 C 0.007 3.993 5 C 0.579 3.421 6 O -0.509 6.509 7 N -0.703 5.703 8 C 0.141 3.859 9 H 0.092 0.908 10 C -0.134 4.134 11 C -0.110 4.110 12 C -0.097 4.097 13 H 0.075 0.925 14 C 0.160 3.840 15 N -0.732 5.732 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.017 4.017 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.122 4.122 25 C 0.496 3.504 26 O -0.482 6.482 27 N -0.586 5.586 28 H 0.421 0.579 29 C 0.156 3.844 30 C -0.132 4.132 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.407 0.593 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 -33.596 -6.343 34.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.157 4.157 3 N -0.067 5.067 4 C -0.161 4.161 5 C 0.362 3.638 6 O -0.381 6.381 7 N -0.355 5.355 8 C 0.037 3.963 9 H 0.110 0.890 10 C -0.173 4.173 11 C -0.148 4.148 12 C -0.116 4.116 13 H 0.094 0.906 14 C 0.032 3.968 15 N -0.376 5.376 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.160 4.160 25 C 0.288 3.712 26 O -0.353 6.353 27 N -0.222 5.222 28 H 0.262 0.738 29 C 0.040 3.960 30 C -0.190 4.190 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.243 0.757 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.217 0.783 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.129 -32.614 -6.461 33.503 hybrid contribution -0.038 -0.325 0.165 0.366 sum -4.167 -32.938 -6.296 33.793 Atomic orbital electron populations 1.20545 0.86769 1.04708 1.02308 1.20142 0.97967 0.85510 1.12036 1.67541 1.08386 1.29664 1.01063 1.23945 0.88872 0.93999 1.09280 1.17054 0.86593 0.82220 0.77924 1.90898 1.12345 1.86507 1.48383 1.46023 1.10706 1.04848 1.73972 1.21787 0.95992 0.81143 0.97355 0.89013 1.22807 1.01790 0.96961 0.95714 1.22466 0.98265 0.93628 1.00478 1.22149 0.98779 0.94993 0.95631 0.90640 1.20699 0.97211 0.86881 0.91983 1.42363 1.84775 1.02518 1.07933 1.19297 1.39439 0.83322 0.94620 0.91198 1.24736 1.02941 0.97970 0.95603 1.69671 1.55087 1.32794 1.00777 0.86122 0.77136 0.85624 0.77365 1.20602 1.21964 1.21946 1.22434 0.99384 0.95166 0.99059 1.19085 0.88443 0.83958 0.79760 1.91075 1.11396 1.85240 1.47545 1.43758 1.06409 1.12063 1.59969 0.73829 1.21568 0.83508 0.99104 0.91805 1.21256 1.01022 0.91707 1.04985 0.89764 0.90769 0.90698 0.75657 0.91433 0.91395 0.91165 0.90917 0.96238 0.96530 0.78272 0.93657 0.90445 0.91232 0.88264 0.89852 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.28 8.82 36.01 0.32 0.04 16 2 C -0.03 -0.19 6.70 -83.18 -0.56 -0.75 16 3 N -0.35 -3.36 9.55 -4.84 -0.05 -3.40 16 4 C 0.01 0.09 6.96 -80.46 -0.56 -0.47 16 5 C 0.58 8.50 7.80 -12.49 -0.10 8.40 16 6 O -0.51 -9.43 15.16 -15.20 -0.23 -9.66 16 7 N -0.70 -8.82 5.03 -53.77 -0.27 -9.09 16 8 C 0.14 1.90 3.25 -66.81 -0.22 1.68 16 9 H 0.09 1.34 7.56 -51.93 -0.39 0.94 16 10 C -0.13 -1.91 6.53 -25.07 -0.16 -2.08 16 11 C -0.11 -1.77 6.19 -24.74 -0.15 -1.93 16 12 C -0.10 -1.56 2.88 -88.96 -0.26 -1.82 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.16 3.25 5.55 -4.04 -0.02 3.23 16 15 N -0.73 -18.82 5.49 -59.91 -0.33 -19.15 16 16 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 19 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 20 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 C -0.12 -1.60 6.14 -25.61 -0.16 -1.76 16 25 C 0.50 5.91 7.93 -12.68 -0.10 5.81 16 26 O -0.48 -7.74 16.40 -15.43 -0.25 -7.99 16 27 N -0.59 -3.75 5.29 -9.45 -0.05 -3.80 16 28 H 0.42 1.47 8.81 -40.82 -0.36 1.11 16 29 C 0.16 0.69 6.78 -81.98 -0.56 0.13 16 30 C -0.13 0.02 9.59 36.01 0.35 0.36 16 31 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 32 H 0.07 0.11 8.08 -51.93 -0.42 -0.31 16 33 H 0.07 0.12 7.36 -51.93 -0.38 -0.26 16 34 H 0.41 4.37 7.68 -40.82 -0.31 4.06 16 35 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.17 7.97 -51.93 -0.41 0.76 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.41 8.03 -51.93 -0.42 -0.01 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 10.33 7.64 -40.82 -0.31 10.02 16 42 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 1.00 7.84 -51.93 -0.41 0.59 16 44 H 0.07 0.81 7.62 -51.93 -0.40 0.41 16 45 H 0.10 -0.12 8.14 -51.93 -0.42 -0.55 16 46 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 47 H 0.10 -0.12 6.44 -51.93 -0.33 -0.46 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -38.20 387.64 -9.13 -47.33 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.07 Total: 6.73 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.42 Total: 3.39 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.03 Total: -63.43 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.48 Total: -17.65 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.20 -9.13 -47.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486204421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.894 kcal (2) G-P(sol) polarization free energy of solvation -38.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds