Wall clock time and date at job start Tue Mar 31 2020 17:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32163 * 119.14331 * 2 1 4 4 C 1.32364 * 120.60675 * 180.02562 * 3 2 1 5 5 C 1.47501 * 120.51227 * 179.72572 * 4 3 2 6 6 O 1.21603 * 120.00164 * 180.02562 * 5 4 3 7 7 N 1.34772 * 120.00047 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00154 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.01899 * 33.61016 * 8 7 5 10 10 C 1.54270 * 110.03570 * 272.16802 * 8 7 5 11 11 C 1.54890 * 104.19652 * 217.10808 * 10 8 7 12 12 C 1.54885 * 102.75197 * 37.94119 * 11 10 8 13 13 H 1.08994 * 110.48742 * 80.73003 * 12 11 10 14 14 C 1.52996 * 110.59948 * 203.32686 * 12 11 10 15 15 N 1.46502 * 109.46843 * 289.83853 * 14 12 11 16 16 C 1.36942 * 120.00007 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99813 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00126 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99951 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00076 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47033 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47379 * 120.00041 * 20 18 16 23 23 H 1.48503 * 109.47234 * 240.00159 * 20 18 16 24 24 C 1.53878 * 110.03240 * 154.99995 * 8 7 5 25 25 C 1.46680 * 118.97961 * 0.02562 * 4 3 2 26 26 O 1.21861 * 120.78370 * 180.02562 * 25 4 3 27 27 N 1.35153 * 118.43264 * 359.97438 * 25 4 3 28 28 H 0.96994 * 120.37189 * 179.97438 * 27 25 4 29 29 C 1.34895 * 119.25912 * 0.02562 * 27 25 4 30 30 C 1.50710 * 119.49679 * 180.02562 * 29 27 25 31 31 H 1.08999 * 109.46685 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.46864 * 120.00131 * 1 2 3 33 33 H 1.09001 * 109.47256 * 240.00567 * 1 2 3 34 34 H 0.97003 * 120.00064 * 0.02562 * 7 5 4 35 35 H 1.09007 * 110.47982 * 335.78370 * 10 8 7 36 36 H 1.08993 * 110.48597 * 98.42173 * 10 8 7 37 37 H 1.09003 * 110.75121 * 279.62599 * 11 10 8 38 38 H 1.09003 * 110.75382 * 156.26074 * 11 10 8 39 39 H 1.08998 * 109.47493 * 49.83741 * 14 12 11 40 40 H 1.08998 * 109.47492 * 169.84040 * 14 12 11 41 41 H 0.96996 * 119.99933 * 0.02562 * 15 14 12 42 42 H 0.96997 * 120.00409 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.03214 * 238.56889 * 24 8 7 44 44 H 1.08998 * 110.03307 * 0.02562 * 24 8 7 45 45 H 1.08994 * 109.47143 * 269.97572 * 30 29 27 46 46 H 1.08998 * 109.46591 * 29.97523 * 30 29 27 47 47 H 1.08999 * 109.46706 * 149.97561 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1881 -0.0005 5 6 4.1901 2.4776 -0.0066 6 8 5.4059 2.4978 -0.0075 7 7 3.4969 3.6334 -0.0122 8 6 4.2082 4.9141 -0.0188 9 1 5.1349 4.8233 -0.5855 10 6 4.5132 5.3568 1.4272 11 6 4.3294 6.8945 1.4004 12 6 3.1139 7.0772 0.4581 13 1 2.1833 6.8986 0.9968 14 6 3.1151 8.4783 -0.1565 15 7 2.8010 9.4659 0.8789 16 6 2.7445 10.7968 0.5612 17 1 2.9320 11.1183 -0.4527 18 6 2.4475 11.7327 1.5423 19 7 2.2196 11.3409 2.7781 20 14 2.3712 13.5480 1.1090 21 1 2.6645 13.7248 -0.3360 22 1 1.0137 14.0714 1.4067 23 1 3.3753 14.2913 1.9119 24 6 3.3186 6.0080 -0.6350 25 6 4.2171 -0.0764 -0.0016 26 8 5.4357 -0.0837 -0.0017 27 7 3.5185 -1.2334 -0.0016 28 1 3.9813 -2.0858 -0.0027 29 6 2.1702 -1.1895 -0.0011 30 6 1.3859 -2.4764 -0.0004 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 -0.3634 -0.5137 0.8900 34 1 2.5270 3.6173 -0.0119 35 1 3.8085 4.9004 2.1224 36 1 5.5374 5.0995 1.6969 37 1 5.2135 7.3820 0.9895 38 1 4.1059 7.2742 2.3975 39 1 4.0989 8.6908 -0.5748 40 1 2.3657 8.5292 -0.9464 41 1 2.6330 9.1772 1.7896 42 1 2.0123 11.9948 3.4638 43 1 3.8139 6.4486 -1.5002 44 1 2.3574 5.5861 -0.9288 45 1 1.1960 -2.7867 -1.0279 46 1 1.9572 -3.2498 0.5130 47 1 0.4373 -2.3234 0.5142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486204421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:52 Heat of formation + Delta-G solvation = -60.495951 kcal Electronic energy + Delta-G solvation = -28088.825342 eV Core-core repulsion = 24077.466969 eV Total energy + Delta-G solvation = -4011.358373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.88306 -40.88036 -39.30128 -38.97899 -36.59901 -36.43686 -34.76842 -34.04789 -32.87030 -30.29505 -30.08382 -29.00760 -27.71016 -26.17491 -25.59478 -24.32904 -23.87256 -22.05907 -21.39079 -20.95316 -19.95178 -19.49386 -19.04926 -18.00241 -17.38709 -17.37044 -17.02422 -16.66026 -16.14146 -15.79938 -15.62044 -15.16054 -15.05638 -15.03209 -14.92326 -14.52191 -14.37650 -14.07064 -13.84778 -13.78501 -13.54716 -13.14657 -12.94268 -12.81715 -12.78361 -12.72555 -12.43465 -12.39774 -12.32481 -12.11034 -12.06527 -11.79949 -11.62504 -11.53634 -11.47420 -11.34900 -10.89852 -10.55420 -10.10662 -9.09077 -8.95444 -7.92765 -5.20799 -0.97623 0.50217 1.24499 1.48177 1.49289 1.53042 1.59407 2.13057 2.54142 2.58008 2.91992 3.01268 3.40546 3.41163 3.58342 3.61127 3.75307 3.89518 3.94796 4.19170 4.41924 4.50687 4.52462 4.56689 4.62973 4.65479 4.69342 4.71392 4.79530 4.88124 4.91368 4.95924 5.06864 5.07592 5.08690 5.15942 5.22628 5.24282 5.25502 5.38697 5.49804 5.52758 5.55841 5.60183 6.30134 6.31578 6.53532 6.63653 7.18936 7.36175 8.13937 8.37153 9.31170 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.001962 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.522667 B =14268.812055 C =15006.252928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.049 4.049 3 N -0.338 5.338 4 C -0.064 4.064 5 C 0.577 3.423 6 O -0.563 6.563 7 N -0.692 5.692 8 C 0.147 3.853 9 H 0.079 0.921 10 C -0.124 4.124 11 C -0.107 4.107 12 C -0.087 4.087 13 H 0.074 0.926 14 C 0.158 3.842 15 N -0.744 5.744 16 C -0.242 4.242 17 H 0.075 0.925 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.295 1.295 24 C -0.108 4.108 25 C 0.489 3.511 26 O -0.542 6.542 27 N -0.565 5.565 28 H 0.438 0.562 29 C 0.201 3.799 30 C -0.134 4.134 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.417 0.583 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.023 0.977 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.127 0.873 46 H 0.105 0.895 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 -36.552 -7.555 38.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.180 4.180 3 N -0.056 5.056 4 C -0.225 4.225 5 C 0.363 3.637 6 O -0.440 6.440 7 N -0.345 5.345 8 C 0.043 3.957 9 H 0.098 0.902 10 C -0.163 4.163 11 C -0.145 4.145 12 C -0.106 4.106 13 H 0.092 0.908 14 C 0.032 3.968 15 N -0.387 5.387 16 C -0.374 4.374 17 H 0.093 0.907 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.222 1.222 24 C -0.146 4.146 25 C 0.284 3.716 26 O -0.419 6.419 27 N -0.200 5.200 28 H 0.281 0.719 29 C 0.082 3.918 30 C -0.191 4.191 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.255 0.745 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.041 0.959 41 H 0.206 0.794 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.145 0.855 46 H 0.123 0.877 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.072 -35.570 -7.714 37.077 hybrid contribution 0.630 0.270 0.514 0.857 sum -6.442 -35.299 -7.200 36.598 Atomic orbital electron populations 1.20711 0.83933 1.04769 1.04773 1.20958 0.99742 0.85225 1.12028 1.67459 1.07229 1.31727 0.99211 1.23188 0.89620 0.92853 1.16814 1.17453 0.86172 0.83445 0.76590 1.90846 1.14575 1.87411 1.51188 1.45865 1.10980 1.04108 1.73538 1.21597 0.95857 0.81833 0.96453 0.90238 1.22694 1.01512 0.95518 0.96576 1.22376 0.97945 0.94753 0.99455 1.22014 0.98606 0.93582 0.96391 0.90776 1.20866 0.96937 0.87864 0.91130 1.42576 1.84766 1.02737 1.08589 1.19701 1.38192 0.84750 0.94799 0.90697 1.25578 1.03539 1.02362 0.95626 1.69827 1.56621 1.33964 1.01712 0.85060 0.76710 0.80227 0.77692 1.19067 1.21917 1.22194 1.22320 1.00527 0.93841 0.97939 1.19108 0.87871 0.85175 0.79434 1.91028 1.13637 1.86172 1.51042 1.43715 1.07407 1.11555 1.57293 0.71855 1.22491 0.82488 1.01055 0.85798 1.21618 1.01319 0.89021 1.07151 0.91087 0.88154 0.88212 0.74516 0.91019 0.92155 0.92026 0.92667 0.96314 0.95884 0.79399 0.94067 0.89752 0.88969 0.85518 0.87681 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 8.82 71.24 0.63 0.45 16 2 C -0.05 -0.47 6.70 42.03 0.28 -0.19 16 3 N -0.34 -6.22 9.55 -169.24 -1.62 -7.84 16 4 C -0.06 -1.63 6.96 43.71 0.30 -1.33 16 5 C 0.58 18.20 7.80 86.69 0.68 18.87 16 6 O -0.56 -22.82 15.16 15.54 0.24 -22.58 16 7 N -0.69 -17.98 5.03 -442.28 -2.22 -20.21 16 8 C 0.15 4.08 3.25 45.72 0.15 4.22 16 9 H 0.08 2.45 7.56 -2.39 -0.02 2.43 16 10 C -0.12 -3.70 6.53 31.67 0.21 -3.49 16 11 C -0.11 -3.58 6.19 31.88 0.20 -3.38 16 12 C -0.09 -2.82 2.88 -9.72 -0.03 -2.85 16 13 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 14 C 0.16 6.44 5.55 86.38 0.48 6.92 16 15 N -0.74 -38.79 5.49 -343.45 -1.89 -40.68 16 16 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 19 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 20 Si 0.97 47.18 29.55 68.60 2.03 49.21 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 24 C -0.11 -2.76 6.14 31.32 0.19 -2.57 16 25 C 0.49 12.09 7.93 86.39 0.68 12.78 16 26 O -0.54 -18.84 16.40 14.71 0.24 -18.60 16 27 N -0.57 -6.12 5.29 -301.74 -1.60 -7.72 16 28 H 0.44 1.97 8.81 -92.71 -0.82 1.16 16 29 C 0.20 0.97 6.78 41.61 0.28 1.25 16 30 C -0.13 0.89 9.59 71.24 0.68 1.57 16 31 H 0.07 0.41 8.10 -2.39 -0.02 0.39 16 32 H 0.10 -0.26 8.08 -2.39 -0.02 -0.28 16 33 H 0.10 -0.24 7.36 -2.39 -0.02 -0.26 16 34 H 0.42 8.93 7.68 -92.71 -0.71 8.22 16 35 H 0.07 2.07 8.05 -2.38 -0.02 2.05 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 2.14 7.97 -2.39 -0.02 2.12 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.02 0.78 8.03 -2.39 -0.02 0.76 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.37 20.69 7.64 -92.71 -0.71 19.98 16 42 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.08 2.09 7.84 -2.39 -0.02 2.07 16 44 H 0.09 1.97 7.62 -2.39 -0.02 1.95 16 45 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 46 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 47 H 0.13 -1.23 6.44 -2.39 -0.02 -1.24 16 Total: -1.00 -89.61 387.64 0.30 -89.31 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -1.21 Total: 24.45 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 6.04 Total: 15.01 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -7.04 Total: -136.80 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: 0.48 Total: -41.18 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -89.61 0.30 -89.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486204421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.816 kcal (2) G-P(sol) polarization free energy of solvation -89.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds