Wall clock time and date at job start Tue Mar 31 2020 18:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34492 * 126.83063 * 2 1 4 4 N 1.36445 * 108.85429 * 179.97438 * 3 2 1 5 5 H 0.96996 * 124.84978 * 180.02562 * 4 3 2 6 6 C 1.34652 * 110.30117 * 0.02562 * 4 3 2 7 7 C 1.36775 * 108.39813 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94123 * 179.73851 * 7 6 4 9 9 O 1.21636 * 119.99339 * 180.02562 * 8 7 6 10 10 N 1.34765 * 120.00379 * 0.02648 * 8 7 6 11 11 C 1.46503 * 120.00511 * 180.02562 * 10 8 7 12 12 H 1.09007 * 110.26568 * 325.69751 * 11 10 8 13 13 C 1.54595 * 110.31159 * 87.78155 * 11 10 8 14 14 C 1.55197 * 102.80056 * 96.98301 * 13 11 10 15 15 N 1.48535 * 103.23357 * 37.43715 * 14 13 11 16 16 C 1.46901 * 110.99857 * 200.25414 * 15 14 13 17 17 C 1.50697 * 109.47433 * 287.39361 * 16 15 14 18 18 O 1.21298 * 119.99575 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00447 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00202 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99788 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99969 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99955 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00180 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47055 * 89.99993 * 24 22 20 26 26 H 1.48496 * 109.47384 * 210.00260 * 24 22 20 27 27 H 1.48507 * 109.46899 * 330.00225 * 24 22 20 28 28 C 1.47904 * 105.82059 * 320.76554 * 15 14 13 29 29 H 1.08994 * 110.08464 * 265.88559 * 28 15 14 30 30 C 1.53007 * 109.91428 * 144.68336 * 28 15 14 31 31 H 1.09006 * 109.47317 * 269.99539 * 1 2 3 32 32 H 1.08998 * 109.47799 * 29.99649 * 1 2 3 33 33 H 1.09000 * 109.46876 * 150.00141 * 1 2 3 34 34 H 1.07995 * 125.56892 * 0.02562 * 3 2 1 35 35 H 1.08003 * 125.80571 * 179.97438 * 6 4 3 36 36 H 0.97002 * 120.00097 * 359.97438 * 10 8 7 37 37 H 1.08999 * 110.72988 * 215.32077 * 13 11 10 38 38 H 1.08996 * 110.72247 * 338.61019 * 13 11 10 39 39 H 1.08992 * 110.68596 * 278.99209 * 14 13 11 40 40 H 1.08997 * 110.78633 * 155.92616 * 14 13 11 41 41 H 1.08998 * 109.47208 * 47.39998 * 16 15 14 42 42 H 1.09003 * 109.47274 * 167.39626 * 16 15 14 43 43 H 0.96998 * 119.99687 * 0.02562 * 19 17 16 44 44 H 0.97005 * 120.00094 * 179.97438 * 23 22 20 45 45 H 1.09001 * 109.47263 * 302.40840 * 30 28 15 46 46 H 1.08997 * 109.47139 * 62.41059 * 30 28 15 47 47 H 1.08999 * 109.47019 * 182.41027 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6110 0.6554 0.0006 5 1 4.3839 1.2415 0.0011 6 6 3.6657 -0.6900 0.0004 7 6 2.3864 -1.1740 0.0003 8 6 1.9751 -2.5880 -0.0053 9 8 0.7937 -2.8776 -0.0052 10 7 2.9075 -3.5610 -0.0105 11 6 2.4983 -4.9677 -0.0167 12 1 1.5822 -5.0970 0.5598 13 6 2.2934 -5.4607 -1.4675 14 6 3.6433 -6.1560 -1.7883 15 7 4.0025 -6.8102 -0.5041 16 6 5.4396 -7.1097 -0.4498 17 6 5.7482 -8.2604 -1.3727 18 8 4.8585 -8.7796 -2.0131 19 7 7.0129 -8.7120 -1.4873 20 6 7.2937 -9.7584 -2.3273 21 1 6.5015 -10.2207 -2.8975 22 6 8.5974 -10.2243 -2.4450 23 7 9.5612 -9.6621 -1.7508 24 14 8.9800 -11.6506 -3.5890 25 1 9.3087 -11.1276 -4.9395 26 1 10.1379 -12.4140 -3.0585 27 1 7.7972 -12.5442 -3.6787 28 6 3.6201 -5.8532 0.5568 29 1 4.4762 -5.2368 0.8311 30 6 3.1098 -6.6117 1.7836 31 1 -0.3634 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9866 2.1059 0.0004 35 1 4.5665 -1.2858 0.0004 36 1 3.8496 -3.3300 -0.0110 37 1 1.4699 -6.1728 -1.5203 38 1 2.1217 -4.6202 -2.1398 39 1 4.3975 -5.4212 -2.0698 40 1 3.5183 -6.8984 -2.5765 41 1 6.0058 -6.2320 -0.7615 42 1 5.7167 -7.3775 0.5699 43 1 7.7245 -8.2965 -0.9754 44 1 10.4714 -9.9876 -1.8327 45 1 2.2666 -7.2403 1.4974 46 1 3.9090 -7.2358 2.1834 47 1 2.7901 -5.8993 2.5442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489308918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:12 Heat of formation + Delta-G solvation = -21.040779 kcal Electronic energy + Delta-G solvation = -28481.535799 eV Core-core repulsion = 24471.888331 eV Total energy + Delta-G solvation = -4009.647469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48660 -39.98073 -38.58167 -37.49900 -34.36040 -33.77771 -32.67917 -31.50579 -31.21731 -31.04359 -29.68882 -26.79955 -26.45853 -25.31487 -24.08477 -23.09030 -21.22572 -20.48809 -20.02603 -19.21910 -19.12333 -18.58953 -17.86581 -16.47849 -16.43062 -15.85788 -15.31967 -14.96425 -14.83113 -14.53756 -14.37268 -14.15819 -13.88603 -13.78039 -13.66070 -13.59060 -13.21143 -12.89251 -12.87097 -12.57836 -12.42770 -12.15118 -11.86464 -11.68627 -11.62845 -11.42481 -11.24526 -11.15798 -11.10846 -10.78444 -10.64653 -10.38366 -10.20462 -9.86929 -9.47976 -9.13773 -8.83838 -8.59363 -8.48052 -7.98853 -7.92076 -6.40491 -3.80940 1.50081 2.11802 2.84994 3.14912 3.18501 3.27024 3.33318 3.44975 3.92749 4.03765 4.26869 4.47968 4.53622 4.73298 4.79393 4.80026 5.02491 5.11056 5.21216 5.27166 5.30105 5.33709 5.46110 5.51629 5.54287 5.66905 5.69438 5.72340 5.83657 5.89548 5.94064 5.98702 6.01378 6.09844 6.21071 6.27488 6.35564 6.46779 6.49621 6.54904 6.58844 7.07818 7.19125 7.25427 7.50535 7.56553 8.08075 8.28296 8.63900 9.20138 9.56440 10.08844 10.77442 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.002165 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.035886 B =12929.678081 C =13515.738370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.028 4.028 4 N -0.549 5.549 5 H 0.418 0.582 6 C 0.047 3.953 7 C -0.227 4.227 8 C 0.590 3.410 9 O -0.541 6.541 10 N -0.724 5.724 11 C 0.141 3.859 12 H 0.100 0.900 13 C -0.130 4.130 14 C 0.042 3.958 15 N -0.484 5.484 16 C 0.038 3.962 17 C 0.446 3.554 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.056 3.944 29 H 0.054 0.946 30 C -0.133 4.133 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.394 0.606 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.088 0.912 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.218 22.879 7.011 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.156 4.156 4 N -0.143 5.143 5 H 0.254 0.746 6 C -0.090 4.090 7 C -0.238 4.238 8 C 0.378 3.622 9 O -0.419 6.419 10 N -0.375 5.375 11 C 0.036 3.964 12 H 0.118 0.882 13 C -0.169 4.169 14 C -0.086 4.086 15 N -0.209 5.209 16 C -0.094 4.094 17 C 0.231 3.769 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.053 4.053 29 H 0.072 0.928 30 C -0.191 4.191 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.186 0.814 35 H 0.188 0.812 36 H 0.228 0.772 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.658 21.851 6.653 25.206 hybrid contribution 2.406 0.725 -0.304 2.531 sum -8.252 22.576 6.350 24.861 Atomic orbital electron populations 1.20198 0.89273 1.02639 1.01973 1.20577 0.95693 0.90320 1.04920 1.21592 0.82417 0.99257 1.12303 1.41488 1.08365 1.06689 1.57786 0.74597 1.21937 0.98555 0.83942 1.04555 1.20412 0.92671 0.92900 1.17778 1.17385 0.85423 0.83915 0.75451 1.90750 1.17131 1.83696 1.50277 1.46030 1.09267 1.05941 1.76254 1.21857 0.98240 0.78968 0.97382 0.88183 1.22950 0.98457 1.00116 0.95394 1.23331 0.94855 0.96958 0.93445 1.64463 1.15780 1.38623 1.01998 1.22062 0.88578 0.97878 1.00869 1.19697 0.83643 0.86880 0.86642 1.90517 1.45722 1.60690 1.48863 1.41858 1.06986 1.31332 1.40256 1.19689 0.94156 1.08926 1.19809 0.87945 1.25245 0.95281 0.99239 0.98274 1.69611 1.01159 1.42316 1.41467 0.85868 0.78097 0.80705 0.79690 1.20479 1.20968 1.19401 1.22649 0.96212 0.92625 0.93846 0.92835 1.21717 1.02077 1.00010 0.95288 0.91833 0.92428 0.90219 0.81428 0.81194 0.77224 0.89823 0.90923 0.94571 0.88273 0.93428 0.89426 0.77597 0.91956 0.91428 0.92200 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.98 36.00 0.36 -0.44 16 2 C -0.11 -1.09 6.35 -102.54 -0.65 -1.74 16 3 C -0.03 -0.20 11.82 -16.82 -0.20 -0.40 16 4 N -0.55 -3.00 5.90 -12.85 -0.08 -3.07 16 5 H 0.42 0.85 8.96 -40.82 -0.37 0.49 16 6 C 0.05 0.33 11.40 -16.84 -0.19 0.14 16 7 C -0.23 -2.40 6.29 -103.35 -0.65 -3.05 16 8 C 0.59 7.49 7.81 -12.60 -0.10 7.39 16 9 O -0.54 -8.68 14.99 5.25 0.08 -8.60 16 10 N -0.72 -7.79 5.06 -53.61 -0.27 -8.06 16 11 C 0.14 1.75 2.95 -66.58 -0.20 1.55 16 12 H 0.10 1.35 7.14 -51.93 -0.37 0.98 16 13 C -0.13 -1.78 6.80 -24.73 -0.17 -1.95 16 14 C 0.04 0.66 5.94 -1.76 -0.01 0.65 16 15 N -0.48 -7.90 4.54 -223.84 -1.02 -8.91 16 16 C 0.04 0.66 5.20 -4.98 -0.03 0.64 16 17 C 0.45 10.46 7.61 -10.99 -0.08 10.37 16 18 O -0.57 -15.50 14.64 5.54 0.08 -15.42 16 19 N -0.57 -14.28 5.29 -10.97 -0.06 -14.33 16 20 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 24 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.06 0.71 2.82 -66.64 -0.19 0.52 16 29 H 0.05 0.60 7.25 -51.93 -0.38 0.22 16 30 C -0.13 -1.59 9.32 37.16 0.35 -1.24 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.17 0.71 7.45 -52.48 -0.39 0.32 16 36 H 0.39 3.29 7.25 -40.82 -0.30 2.99 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 39 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 40 H 0.10 1.88 7.10 -51.93 -0.37 1.51 16 41 H 0.05 0.74 7.83 -51.93 -0.41 0.34 16 42 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 43 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -35.09 387.87 -8.68 -43.77 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.97 Total: 11.98 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.00 Total: 4.52 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.70 Total: -58.15 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.16 Total: -24.01 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.09 -8.68 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489308918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.726 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds