Wall clock time and date at job start Tue Mar 31 2020 18:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34480 * 126.83389 * 2 1 4 4 N 1.36454 * 108.85575 * 179.87807 * 3 2 1 5 5 H 0.97006 * 124.84801 * 180.17070 * 4 3 2 6 6 C 1.34657 * 110.29672 * 0.40249 * 4 3 2 7 7 C 1.50701 * 125.79849 * 179.72006 * 6 4 3 8 8 C 1.50697 * 109.47076 * 265.04514 * 7 6 4 9 9 N 1.34783 * 119.99554 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00170 * 359.97438 * 8 7 6 11 11 C 1.36763 * 108.39660 * 359.76121 * 6 4 3 12 12 C 1.47268 * 126.94341 * 180.02562 * 11 6 4 13 13 O 1.21620 * 120.00091 * 269.98615 * 12 11 6 14 14 N 1.34777 * 119.99718 * 89.98271 * 12 11 6 15 15 C 1.46496 * 120.00057 * 180.02562 * 14 12 11 16 16 C 1.53785 * 113.61237 * 254.13378 * 15 14 12 17 17 C 1.54043 * 86.98511 * 270.83785 * 16 15 14 18 18 C 1.53007 * 113.61818 * 220.01915 * 17 16 15 19 19 N 1.46494 * 109.47232 * 272.49286 * 18 17 16 20 20 C 1.36940 * 120.00306 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99714 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00501 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99780 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99993 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46894 * 90.00280 * 24 22 20 26 26 H 1.48506 * 109.46924 * 209.99708 * 24 22 20 27 27 H 1.48495 * 109.47374 * 329.99766 * 24 22 20 28 28 C 1.53782 * 87.08026 * 334.56612 * 17 16 15 29 29 H 1.09002 * 109.47152 * 269.68391 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68492 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68473 * 1 2 3 32 32 H 1.08005 * 125.57182 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46985 * 25.05111 * 7 6 4 34 34 H 1.09006 * 109.46493 * 145.04424 * 7 6 4 35 35 H 0.96993 * 120.00243 * 0.02562 * 9 8 7 36 36 H 0.97002 * 119.99755 * 179.97438 * 9 8 7 37 37 H 0.97004 * 119.99806 * 0.02562 * 14 12 11 38 38 H 1.08999 * 112.85114 * 25.32534 * 15 14 12 39 39 H 1.09004 * 113.61402 * 25.43074 * 16 15 14 40 40 H 1.09001 * 113.61161 * 156.32941 * 16 15 14 41 41 H 1.09002 * 113.69123 * 89.12566 * 17 16 15 42 42 H 1.09002 * 109.46599 * 32.49554 * 18 17 16 43 43 H 1.08999 * 109.46868 * 152.49259 * 18 17 16 44 44 H 0.97003 * 120.00374 * 0.02562 * 19 18 17 45 45 H 0.96998 * 120.00048 * 180.02562 * 23 22 20 46 46 H 1.09002 * 113.61723 * 270.88565 * 28 17 16 47 47 H 1.08998 * 113.69288 * 139.98569 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6552 0.0027 5 1 4.3841 1.2413 0.0057 6 6 3.6656 -0.6903 -0.0043 7 6 4.9226 -1.5216 -0.0099 8 6 5.2725 -1.8936 -1.4277 9 7 6.3661 -2.6406 -1.6780 10 8 4.5700 -1.5209 -2.3434 11 6 2.3864 -1.1740 -0.0065 12 6 1.9749 -2.5880 -0.0132 13 8 1.8046 -3.1668 -1.0693 14 7 1.7871 -3.2407 1.1509 15 6 1.3783 -4.6475 1.1443 16 6 -0.0951 -4.8626 1.5288 17 6 0.3841 -4.9535 2.9900 18 6 -0.3312 -6.0340 3.8036 19 7 -1.5537 -5.4765 4.3874 20 6 -2.3636 -6.2639 5.1617 21 1 -2.1007 -7.2958 5.3422 22 6 -3.5222 -5.7359 5.7145 23 7 -3.8428 -4.4786 5.4940 24 14 -4.6264 -6.8099 6.7711 25 1 -4.2010 -6.7117 8.1904 26 1 -6.0329 -6.3508 6.6430 27 1 -4.5233 -8.2209 6.3199 28 6 1.7455 -5.4019 2.4330 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5089 32 1 1.9868 2.1059 0.0004 33 1 5.7397 -0.9477 0.4274 34 1 4.7615 -2.4276 0.5744 35 1 6.9276 -2.9390 -0.9456 36 1 6.5911 -2.8805 -2.5906 37 1 1.9227 -2.7790 1.9932 38 1 1.6725 -5.1695 0.2338 39 1 -0.7292 -3.9988 1.3287 40 1 -0.5143 -5.7939 1.1479 41 1 0.4168 -3.9911 3.5008 42 1 -0.5878 -6.8692 3.1519 43 1 0.3255 -6.3832 4.6004 44 1 -1.7900 -4.5499 4.2250 45 1 -4.6522 -4.1095 5.8806 46 1 1.8287 -6.4805 2.2989 47 1 2.5974 -4.9741 2.9616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505520406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:52 Heat of formation + Delta-G solvation = -4.743610 kcal Electronic energy + Delta-G solvation = -28511.707185 eV Core-core repulsion = 24502.766414 eV Total energy + Delta-G solvation = -4008.940770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56670 -39.78954 -39.43290 -37.89927 -34.43169 -34.02359 -33.05689 -32.91288 -31.75615 -30.73445 -28.51570 -26.72882 -26.08092 -25.41830 -23.76784 -22.68286 -21.41589 -21.25439 -19.64451 -19.49111 -18.95340 -18.23356 -17.35274 -17.00873 -16.93156 -16.43044 -15.82859 -15.39195 -14.85499 -14.65305 -14.55452 -14.35813 -13.95776 -13.79173 -13.62329 -13.43347 -13.29168 -13.15380 -12.78674 -12.68647 -12.63462 -12.31511 -12.21167 -12.04869 -11.56265 -11.35638 -10.98089 -10.79592 -10.41312 -10.33118 -10.28184 -10.02533 -10.02428 -9.84081 -9.75564 -9.54833 -8.86602 -8.76999 -8.64396 -8.28972 -6.85017 -5.71287 -2.99206 1.84885 2.32191 2.47133 2.72249 2.90056 3.30242 3.45608 3.46658 3.51619 3.53593 4.18444 4.52509 4.62487 4.65523 4.75514 4.87826 4.92047 4.94676 5.05405 5.20012 5.23318 5.31769 5.42253 5.62934 5.74430 5.80161 5.83977 5.94060 6.01338 6.04513 6.10597 6.12497 6.19225 6.35902 6.41767 6.42144 6.51491 6.66143 6.75489 6.80981 6.85240 6.93129 7.01666 7.29346 7.66572 7.74534 7.93699 8.40590 8.48103 9.58908 10.18867 10.53279 11.51760 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.002369 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.062767 B =11814.473017 C =12805.631722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.127 4.127 3 C -0.008 4.008 4 N -0.546 5.546 5 H 0.413 0.587 6 C 0.079 3.921 7 C -0.079 4.079 8 C 0.513 3.487 9 N -0.859 5.859 10 O -0.515 6.515 11 C -0.194 4.194 12 C 0.593 3.407 13 O -0.530 6.530 14 N -0.705 5.705 15 C 0.116 3.884 16 C -0.139 4.139 17 C -0.113 4.113 18 C 0.163 3.837 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.137 4.137 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.170 0.830 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.400 0.600 36 H 0.403 0.597 37 H 0.401 0.599 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.020 0.980 43 H 0.017 0.983 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.093 0.907 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.536 10.701 -11.062 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C -0.137 4.137 4 N -0.140 5.140 5 H 0.249 0.751 6 C -0.037 4.037 7 C -0.120 4.120 8 C 0.296 3.704 9 N -0.423 5.423 10 O -0.389 6.389 11 C -0.205 4.205 12 C 0.378 3.622 13 O -0.406 6.406 14 N -0.356 5.356 15 C 0.010 3.990 16 C -0.177 4.177 17 C -0.131 4.131 18 C 0.035 3.965 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.176 4.176 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.187 0.813 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.228 0.772 36 H 0.234 0.766 37 H 0.236 0.764 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.112 0.888 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.841 10.567 -12.225 28.801 hybrid contribution 0.039 0.012 1.031 1.032 sum 23.880 10.579 -11.194 28.416 Atomic orbital electron populations 1.20180 0.89343 1.02525 1.02180 1.20452 0.95312 0.90260 1.07287 1.21462 0.82031 0.99087 1.11100 1.41214 1.08248 1.05611 1.58926 0.75071 1.19059 0.93747 0.83312 1.07578 1.20205 0.95075 1.01062 0.95626 1.20432 0.80470 0.78247 0.91260 1.43821 1.28927 1.56797 1.12800 1.90845 1.49079 1.52640 1.46314 1.19963 0.92355 0.92617 1.15551 1.17486 0.76200 0.84972 0.83525 1.90805 1.50378 1.68212 1.31157 1.45754 1.69517 1.11781 1.08502 1.21922 0.96488 0.81452 0.99107 1.23449 0.95431 1.02709 0.96156 1.22795 0.94654 1.00211 0.95467 1.20635 0.88395 0.93552 0.93904 1.42354 1.23069 1.12511 1.59636 1.19245 1.01443 0.94001 1.22179 0.91285 1.24736 0.98636 0.96324 1.01468 1.69661 1.26577 1.12711 1.49333 0.86196 0.80175 0.79522 0.80360 1.21801 1.21803 1.20807 1.23296 0.97856 1.00777 0.95657 0.91269 0.91671 0.91732 0.81303 0.87694 0.86597 0.77171 0.76637 0.76434 0.88571 0.91252 0.89268 0.89407 0.96268 0.96510 0.78303 0.93585 0.88845 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.35 36.01 0.37 -0.62 16 2 C -0.13 -1.55 6.36 -102.54 -0.65 -2.20 16 3 C -0.01 -0.08 11.82 -16.82 -0.20 -0.28 16 4 N -0.55 -4.40 5.90 -9.11 -0.05 -4.45 16 5 H 0.41 1.88 8.96 -40.82 -0.37 1.51 16 6 C 0.08 0.81 5.67 -81.89 -0.46 0.34 16 7 C -0.08 -0.55 6.01 -29.04 -0.17 -0.73 16 8 C 0.51 4.93 8.09 -10.98 -0.09 4.84 16 9 N -0.86 -4.58 8.87 31.22 0.28 -4.31 16 10 O -0.52 -7.86 16.87 5.56 0.09 -7.77 16 11 C -0.19 -2.57 6.05 -103.35 -0.62 -3.19 16 12 C 0.59 8.95 7.30 -12.59 -0.09 8.86 16 13 O -0.53 -10.28 16.73 5.26 0.09 -10.20 16 14 N -0.70 -8.95 5.26 -54.14 -0.28 -9.24 16 15 C 0.12 1.55 4.30 -67.12 -0.29 1.26 16 16 C -0.14 -2.18 7.45 -25.78 -0.19 -2.37 16 17 C -0.11 -1.78 3.65 -89.67 -0.33 -2.11 16 18 C 0.16 3.28 6.10 -4.04 -0.02 3.26 16 19 N -0.73 -18.85 5.60 -59.91 -0.34 -19.19 16 20 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 24 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C -0.14 -1.67 7.38 -25.92 -0.19 -1.87 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.12 0.71 8.05 -51.93 -0.42 0.29 16 35 H 0.40 0.73 8.83 -40.82 -0.36 0.37 16 36 H 0.40 2.03 8.93 -40.82 -0.36 1.66 16 37 H 0.40 4.37 8.69 -40.82 -0.35 4.02 16 38 H 0.10 1.38 7.50 -51.93 -0.39 0.99 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.43 7.90 -51.93 -0.41 1.01 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 10.40 7.67 -40.82 -0.31 10.08 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.09 1.08 8.10 -51.93 -0.42 0.65 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -40.32 400.98 -8.82 -49.14 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.15 Total: 12.49 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -3.19 Total: -2.28 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: 0.33 Total: -65.14 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.18 Total: -17.96 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -40.32 -8.82 -49.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505520406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.396 kcal (2) G-P(sol) polarization free energy of solvation -40.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds