Wall clock time and date at job start Tue Mar 31 2020 18:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34480 * 126.83389 * 2 1 4 4 N 1.36454 * 108.85575 * 179.87807 * 3 2 1 5 5 H 0.97006 * 124.84801 * 180.17070 * 4 3 2 6 6 C 1.34657 * 110.29672 * 0.40249 * 4 3 2 7 7 C 1.50701 * 125.79849 * 179.72006 * 6 4 3 8 8 C 1.50697 * 109.47076 * 265.04514 * 7 6 4 9 9 N 1.34783 * 119.99554 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00170 * 359.97438 * 8 7 6 11 11 C 1.36763 * 108.39660 * 359.76121 * 6 4 3 12 12 C 1.47268 * 126.94341 * 180.02562 * 11 6 4 13 13 O 1.21620 * 120.00091 * 269.98615 * 12 11 6 14 14 N 1.34777 * 119.99718 * 89.98271 * 12 11 6 15 15 C 1.46496 * 120.00057 * 180.02562 * 14 12 11 16 16 C 1.53785 * 113.61237 * 254.13378 * 15 14 12 17 17 C 1.54043 * 86.98511 * 270.83785 * 16 15 14 18 18 C 1.53007 * 113.61818 * 220.01915 * 17 16 15 19 19 N 1.46494 * 109.47232 * 272.49286 * 18 17 16 20 20 C 1.36940 * 120.00306 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99714 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00501 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99780 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99993 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46894 * 90.00280 * 24 22 20 26 26 H 1.48506 * 109.46924 * 209.99708 * 24 22 20 27 27 H 1.48495 * 109.47374 * 329.99766 * 24 22 20 28 28 C 1.53782 * 87.08026 * 334.56612 * 17 16 15 29 29 H 1.09002 * 109.47152 * 269.68391 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68492 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68473 * 1 2 3 32 32 H 1.08005 * 125.57182 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46985 * 25.05111 * 7 6 4 34 34 H 1.09006 * 109.46493 * 145.04424 * 7 6 4 35 35 H 0.96993 * 120.00243 * 0.02562 * 9 8 7 36 36 H 0.97002 * 119.99755 * 179.97438 * 9 8 7 37 37 H 0.97004 * 119.99806 * 0.02562 * 14 12 11 38 38 H 1.08999 * 112.85114 * 25.32534 * 15 14 12 39 39 H 1.09004 * 113.61402 * 25.43074 * 16 15 14 40 40 H 1.09001 * 113.61161 * 156.32941 * 16 15 14 41 41 H 1.09002 * 113.69123 * 89.12566 * 17 16 15 42 42 H 1.09002 * 109.46599 * 32.49554 * 18 17 16 43 43 H 1.08999 * 109.46868 * 152.49259 * 18 17 16 44 44 H 0.97003 * 120.00374 * 0.02562 * 19 18 17 45 45 H 0.96998 * 120.00048 * 180.02562 * 23 22 20 46 46 H 1.09002 * 113.61723 * 270.88565 * 28 17 16 47 47 H 1.08998 * 113.69288 * 139.98569 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6552 0.0027 5 1 4.3841 1.2413 0.0057 6 6 3.6656 -0.6903 -0.0043 7 6 4.9226 -1.5216 -0.0099 8 6 5.2725 -1.8936 -1.4277 9 7 6.3661 -2.6406 -1.6780 10 8 4.5700 -1.5209 -2.3434 11 6 2.3864 -1.1740 -0.0065 12 6 1.9749 -2.5880 -0.0132 13 8 1.8046 -3.1668 -1.0693 14 7 1.7871 -3.2407 1.1509 15 6 1.3783 -4.6475 1.1443 16 6 -0.0951 -4.8626 1.5288 17 6 0.3841 -4.9535 2.9900 18 6 -0.3312 -6.0340 3.8036 19 7 -1.5537 -5.4765 4.3874 20 6 -2.3636 -6.2639 5.1617 21 1 -2.1007 -7.2958 5.3422 22 6 -3.5222 -5.7359 5.7145 23 7 -3.8428 -4.4786 5.4940 24 14 -4.6264 -6.8099 6.7711 25 1 -4.2010 -6.7117 8.1904 26 1 -6.0329 -6.3508 6.6430 27 1 -4.5233 -8.2209 6.3199 28 6 1.7455 -5.4019 2.4330 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5089 32 1 1.9868 2.1059 0.0004 33 1 5.7397 -0.9477 0.4274 34 1 4.7615 -2.4276 0.5744 35 1 6.9276 -2.9390 -0.9456 36 1 6.5911 -2.8805 -2.5906 37 1 1.9227 -2.7790 1.9932 38 1 1.6725 -5.1695 0.2338 39 1 -0.7292 -3.9988 1.3287 40 1 -0.5143 -5.7939 1.1479 41 1 0.4168 -3.9911 3.5008 42 1 -0.5878 -6.8692 3.1519 43 1 0.3255 -6.3832 4.6004 44 1 -1.7900 -4.5499 4.2250 45 1 -4.6522 -4.1095 5.8806 46 1 1.8287 -6.4805 2.2989 47 1 2.5974 -4.9741 2.9616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505520406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:51 Heat of formation + Delta-G solvation = -38.084435 kcal Electronic energy + Delta-G solvation = -28513.152951 eV Core-core repulsion = 24502.766414 eV Total energy + Delta-G solvation = -4010.386537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.34278 -40.95473 -40.17954 -39.16107 -36.30404 -34.70081 -34.37162 -33.73263 -32.90008 -32.29348 -29.41321 -28.36004 -26.86812 -26.60755 -25.39456 -24.02459 -22.76965 -22.05929 -20.54977 -20.33550 -20.26515 -19.03971 -18.89532 -17.99559 -17.58915 -17.45823 -16.92995 -16.67218 -16.18438 -15.87277 -15.71878 -15.51114 -15.32060 -15.07333 -14.73622 -14.59702 -14.43074 -14.18409 -14.04532 -13.69939 -13.55024 -13.40814 -13.33944 -13.10070 -13.04139 -12.87534 -12.67615 -12.20755 -12.17045 -11.91032 -11.73329 -11.33606 -11.14319 -11.13271 -11.02247 -10.83403 -10.63782 -10.00486 -9.48181 -9.04721 -8.96047 -7.93317 -5.21651 1.08964 1.47484 1.49655 1.58052 1.59010 1.63701 1.65009 2.15335 2.52609 2.57410 2.76174 3.39489 3.55263 3.60949 3.62957 3.95436 3.97206 4.00763 4.11207 4.20198 4.27234 4.35166 4.40013 4.56148 4.58324 4.66513 4.79325 4.85355 4.86900 4.93556 4.94925 4.98975 5.01521 5.12913 5.17963 5.27775 5.31841 5.40271 5.51037 5.71328 5.83102 5.90140 6.02701 6.29456 6.46863 6.60554 6.73216 7.30216 7.35072 7.37834 8.13596 8.35716 9.30467 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.002369 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.062767 B =11814.473017 C =12805.631722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.167 4.167 3 C 0.008 3.992 4 N -0.530 5.530 5 H 0.433 0.567 6 C 0.088 3.912 7 C -0.078 4.078 8 C 0.507 3.493 9 N -0.837 5.837 10 O -0.583 6.583 11 C -0.239 4.239 12 C 0.596 3.404 13 O -0.584 6.584 14 N -0.691 5.691 15 C 0.124 3.876 16 C -0.146 4.146 17 C -0.109 4.109 18 C 0.161 3.839 19 N -0.746 5.746 20 C -0.244 4.244 21 H 0.075 0.925 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.974 3.026 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.270 1.270 28 C -0.110 4.110 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.204 0.796 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.420 0.580 36 H 0.405 0.595 37 H 0.412 0.588 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.019 0.981 43 H 0.025 0.975 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.108 0.892 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.458 10.890 -9.797 31.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.173 4.173 3 C -0.122 4.122 4 N -0.126 5.126 5 H 0.273 0.727 6 C -0.030 4.030 7 C -0.118 4.118 8 C 0.292 3.708 9 N -0.402 5.402 10 O -0.461 6.461 11 C -0.250 4.250 12 C 0.384 3.616 13 O -0.463 6.463 14 N -0.341 5.341 15 C 0.018 3.982 16 C -0.185 4.185 17 C -0.128 4.128 18 C 0.034 3.966 19 N -0.388 5.388 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.803 3.197 25 H -0.212 1.212 26 H -0.223 1.223 27 H -0.195 1.195 28 C -0.148 4.148 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.220 0.780 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.252 0.748 36 H 0.236 0.764 37 H 0.249 0.751 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.037 0.963 43 H 0.043 0.957 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.126 0.874 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 26.874 10.721 -10.903 30.920 hybrid contribution -0.796 -0.060 0.602 0.999 sum 26.078 10.662 -10.301 29.998 Atomic orbital electron populations 1.20103 0.89965 1.01798 1.01872 1.20652 0.95515 0.91223 1.09947 1.21901 0.81970 0.99768 1.08537 1.41248 1.08742 1.05256 1.57314 0.72707 1.19418 0.93884 0.84299 1.05420 1.20378 0.95214 1.01861 0.94316 1.20901 0.80444 0.77852 0.91620 1.43678 1.27748 1.54951 1.13842 1.90825 1.51438 1.55571 1.48314 1.20017 0.94290 0.91685 1.18978 1.17845 0.75018 0.85742 0.83021 1.90765 1.52929 1.69586 1.33030 1.45662 1.68392 1.11481 1.08576 1.21790 0.94631 0.82051 0.99722 1.23479 0.96777 1.01527 0.96721 1.22712 0.96791 0.98951 0.94347 1.20826 0.86782 0.94706 0.94237 1.42602 1.24579 1.11948 1.59698 1.19670 1.01744 0.94494 1.21725 0.90660 1.25592 1.00403 0.97692 1.03414 1.69824 1.27017 1.14484 1.50850 0.85128 0.77668 0.78267 0.78647 1.21160 1.22309 1.19485 1.23193 0.96369 1.01578 0.93676 0.91358 0.94916 0.89904 0.77964 0.82835 0.85402 0.74823 0.76358 0.75125 0.89232 0.93616 0.89805 0.89730 0.96322 0.95724 0.79613 0.94063 0.87365 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 10.35 71.24 0.74 -1.23 16 2 C -0.17 -4.10 6.36 -18.51 -0.12 -4.21 16 3 C 0.01 0.13 11.82 83.11 0.98 1.11 16 4 N -0.53 -7.21 5.90 -182.72 -1.08 -8.29 16 5 H 0.43 2.40 8.96 -92.70 -0.83 1.57 16 6 C 0.09 1.64 5.67 41.78 0.24 1.88 16 7 C -0.08 -0.87 6.01 29.10 0.17 -0.69 16 8 C 0.51 9.03 8.09 87.65 0.71 9.74 16 9 N -0.84 -7.18 8.87 -173.53 -1.54 -8.72 16 10 O -0.58 -17.94 16.87 -3.02 -0.05 -17.99 16 11 C -0.24 -6.36 6.05 -19.04 -0.12 -6.47 16 12 C 0.60 18.56 7.30 86.62 0.63 19.19 16 13 O -0.58 -23.88 16.73 -4.09 -0.07 -23.94 16 14 N -0.69 -17.46 5.26 -443.45 -2.33 -19.80 16 15 C 0.12 3.27 4.30 45.52 0.20 3.47 16 16 C -0.15 -4.72 7.45 31.21 0.23 -4.49 16 17 C -0.11 -3.39 3.65 -10.18 -0.04 -3.42 16 18 C 0.16 6.38 6.10 86.38 0.53 6.90 16 19 N -0.75 -38.81 5.60 -343.45 -1.92 -40.73 16 20 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 21 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 22 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 23 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 24 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 28 C -0.11 -2.41 7.38 31.12 0.23 -2.18 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.20 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.15 0.17 8.14 -2.38 -0.02 0.15 16 34 H 0.13 1.17 8.05 -2.38 -0.02 1.15 16 35 H 0.42 0.19 8.83 -92.71 -0.82 -0.63 16 36 H 0.41 3.49 8.93 -92.71 -0.83 2.66 16 37 H 0.41 8.62 8.69 -92.71 -0.81 7.81 16 38 H 0.09 2.57 7.50 -2.39 -0.02 2.55 16 39 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.08 2.77 7.90 -2.39 -0.02 2.75 16 41 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.02 0.76 7.85 -2.39 -0.02 0.74 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 45 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.11 2.14 8.10 -2.39 -0.02 2.13 16 47 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -92.41 400.98 -1.93 -94.34 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -2.94 Total: 34.32 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.69 Total: 2.30 kcal Atomic # 7 Polarization: -131.37 SS G_CDS: -6.59 Total: -137.96 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.12 Total: -41.94 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -92.41 -1.93 -94.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505520406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.260 kcal (2) G-P(sol) polarization free energy of solvation -92.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds