Wall clock time and date at job start Tue Mar 31 2020 18:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 126.82830 * 2 1 4 4 N 1.36451 * 108.85654 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.85387 * 179.97438 * 4 3 2 6 6 C 1.34657 * 110.29593 * 0.02562 * 4 3 2 7 7 C 1.50698 * 125.80249 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47285 * 265.00083 * 7 6 4 9 9 N 1.34780 * 120.00188 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00172 * 359.97438 * 8 7 6 11 11 C 1.36772 * 108.40053 * 359.97438 * 6 4 3 12 12 C 1.47252 * 126.94811 * 180.02562 * 11 6 4 13 13 O 1.21625 * 120.00420 * 270.00568 * 12 11 6 14 14 N 1.34786 * 119.99768 * 89.99563 * 12 11 6 15 15 C 1.46502 * 119.99919 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.46847 * 325.00195 * 15 14 12 17 17 C 1.53003 * 109.47190 * 205.00527 * 15 14 12 18 18 N 1.46498 * 109.46879 * 54.99902 * 17 15 14 19 19 C 1.36939 * 119.99471 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00517 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99918 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47155 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47131 * 119.99976 * 23 21 19 26 26 H 1.48495 * 109.46952 * 239.99874 * 23 21 19 27 27 C 1.53000 * 109.47297 * 85.00195 * 15 14 12 28 28 C 1.53001 * 117.49632 * 8.74720 * 27 15 14 29 29 C 1.52998 * 117.50007 * 300.08960 * 27 15 14 30 30 H 1.08995 * 109.47279 * 89.97756 * 1 2 3 31 31 H 1.09004 * 109.46727 * 209.97397 * 1 2 3 32 32 H 1.09001 * 109.47360 * 329.97526 * 1 2 3 33 33 H 1.08004 * 125.57593 * 359.75562 * 3 2 1 34 34 H 1.09002 * 109.47307 * 25.00149 * 7 6 4 35 35 H 1.09004 * 109.47420 * 145.00079 * 7 6 4 36 36 H 0.97006 * 119.99889 * 359.97438 * 9 8 7 37 37 H 0.96997 * 120.00085 * 180.02562 * 9 8 7 38 38 H 0.96992 * 120.00045 * 0.02562 * 14 12 11 39 39 H 1.09001 * 109.46759 * 174.99936 * 17 15 14 40 40 H 1.09000 * 109.46910 * 294.99818 * 17 15 14 41 41 H 0.96998 * 120.00231 * 0.02562 * 18 17 15 42 42 H 0.96994 * 119.99707 * 180.02562 * 22 21 19 43 43 H 1.08994 * 115.55227 * 154.41337 * 27 15 14 44 44 H 1.08998 * 117.49810 * 359.97438 * 28 27 15 45 45 H 1.08998 * 117.49716 * 145.01369 * 28 27 15 46 46 H 1.08993 * 117.50387 * 214.97863 * 29 27 15 47 47 H 1.09004 * 117.49406 * 359.97314 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6111 0.6554 -0.0006 5 1 4.3840 1.2416 -0.0011 6 6 3.6657 -0.6900 -0.0015 7 6 4.9226 -1.5213 -0.0029 8 6 5.2724 -1.9007 -1.4187 9 7 6.3654 -2.6498 -1.6653 10 8 4.5699 -1.5328 -2.3364 11 6 2.3865 -1.1740 -0.0010 12 6 1.9751 -2.5879 -0.0012 13 8 1.8047 -3.1717 -1.0545 14 7 1.7875 -3.2353 1.1661 15 6 1.3787 -4.6421 1.1660 16 1 0.7110 -4.8264 0.3243 17 6 0.6513 -4.9620 2.4735 18 7 -0.4643 -4.0295 2.6524 19 6 -1.2647 -4.1240 3.7595 20 1 -1.0732 -4.8856 4.5009 21 6 -2.3222 -3.2408 3.9288 22 7 -2.5558 -2.3129 3.0250 23 14 -3.4136 -3.3691 5.4394 24 1 -2.9439 -4.4876 6.2958 25 1 -3.3504 -2.0984 6.2051 26 1 -4.8144 -3.6237 5.0177 27 6 2.6163 -5.5328 1.0397 28 6 3.9856 -4.8590 1.1479 29 6 3.4850 -5.3624 -0.2082 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3634 0.8898 0.5142 33 1 1.9866 2.1060 -0.0037 34 1 5.7398 -0.9452 0.4313 35 1 4.7618 -2.4243 0.5860 36 1 6.9271 -2.9445 -0.9313 37 1 6.5907 -2.8937 -2.5767 38 1 1.9231 -2.7697 2.0061 39 1 0.2698 -5.9824 2.4367 40 1 1.3449 -4.8633 3.3086 41 1 -0.6365 -3.3458 1.9863 42 1 -3.2945 -1.6956 3.1435 43 1 2.5161 -6.5377 1.4497 44 1 4.0048 -3.7811 1.3087 45 1 4.7863 -5.4207 1.6289 46 1 3.9566 -6.2550 -0.6189 47 1 3.1745 -4.6159 -0.9394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569319708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:46 Heat of formation + Delta-G solvation = 9.638243 kcal Electronic energy + Delta-G solvation = -30288.600385 eV Core-core repulsion = 26280.283259 eV Total energy + Delta-G solvation = -4008.317126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28372 -39.45602 -39.22038 -36.80358 -34.82847 -33.81985 -33.09795 -32.61849 -31.71813 -30.86759 -28.49837 -27.61759 -25.73854 -24.07932 -22.73694 -22.26519 -21.41492 -21.13216 -19.71381 -19.27828 -19.07944 -17.97580 -17.21574 -17.09508 -16.70846 -16.09561 -15.82272 -15.58193 -15.16734 -14.58839 -14.34876 -14.18168 -13.62244 -13.52523 -13.34001 -13.15168 -13.10089 -12.92099 -12.74325 -12.45969 -12.24699 -11.99958 -11.75403 -11.57579 -11.29709 -11.11774 -10.92809 -10.84746 -10.79474 -10.21423 -10.11397 -10.02933 -9.82947 -9.74471 -9.53071 -9.41400 -8.86420 -8.46888 -8.28976 -7.96279 -6.89528 -5.72484 -3.01738 2.14570 2.53001 2.83082 3.07633 3.19033 3.45185 3.50958 3.52290 3.53114 3.81630 4.10666 4.44341 4.60279 4.74646 4.86479 4.91951 5.06538 5.20336 5.21710 5.27532 5.39721 5.59844 5.64864 5.70659 5.78389 5.82920 5.90013 6.07378 6.11051 6.13465 6.25838 6.27414 6.36673 6.47080 6.56841 6.58656 6.60441 6.64318 6.78229 7.04462 7.09766 7.11717 7.15860 7.60074 7.73370 8.08206 8.13984 8.45279 8.78999 9.57249 10.13783 10.49712 11.49670 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.004035 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.264448 B = 6936.875247 C = 8469.152248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.116 4.116 3 C -0.016 4.016 4 N -0.548 5.548 5 H 0.410 0.590 6 C 0.073 3.927 7 C -0.083 4.083 8 C 0.515 3.485 9 N -0.858 5.858 10 O -0.515 6.515 11 C -0.189 4.189 12 C 0.593 3.407 13 O -0.533 6.533 14 N -0.704 5.704 15 C 0.166 3.834 16 H 0.090 0.910 17 C 0.149 3.851 18 N -0.730 5.730 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.927 5.927 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.156 4.156 28 C -0.184 4.184 29 C -0.188 4.188 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.168 0.832 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.399 0.601 37 H 0.401 0.599 38 H 0.404 0.596 39 H 0.032 0.968 40 H 0.025 0.975 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.368 3.245 -5.040 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C -0.144 4.144 4 N -0.142 5.142 5 H 0.246 0.754 6 C -0.043 4.043 7 C -0.124 4.124 8 C 0.298 3.702 9 N -0.423 5.423 10 O -0.389 6.389 11 C -0.200 4.200 12 C 0.379 3.621 13 O -0.410 6.410 14 N -0.355 5.355 15 C 0.061 3.939 16 H 0.108 0.892 17 C 0.021 3.979 18 N -0.375 5.375 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.575 5.575 23 Si 0.736 3.264 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.176 4.176 28 C -0.221 4.221 29 C -0.224 4.224 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.185 0.815 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.227 0.773 37 H 0.232 0.768 38 H 0.239 0.761 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 20.653 3.198 -6.104 21.772 hybrid contribution 0.125 0.383 1.102 1.173 sum 20.778 3.580 -5.002 21.670 Atomic orbital electron populations 1.20191 0.88867 1.03549 1.01653 1.20541 0.95552 0.90137 1.06052 1.21432 0.82010 0.99036 1.11873 1.41159 1.08105 1.05528 1.59422 0.75384 1.18999 0.93644 0.83298 1.08352 1.20320 0.95144 1.01200 0.95738 1.20412 0.80379 0.78152 0.91232 1.43800 1.29019 1.56803 1.12671 1.90840 1.49021 1.52911 1.46091 1.20023 0.92214 0.92913 1.14843 1.17445 0.76176 0.84813 0.83660 1.90714 1.50787 1.67893 1.31581 1.46042 1.68871 1.12029 1.08566 1.20744 0.93370 0.79324 1.00455 0.89190 1.20891 0.90040 0.94418 0.92559 1.42347 1.31924 1.37144 1.26121 1.19237 1.06866 1.12492 0.98645 0.91210 1.24723 0.99183 0.98368 0.98420 1.69675 1.32130 1.20677 1.35026 0.86155 0.80639 0.77083 0.82508 1.20661 1.21960 1.21948 1.22702 0.91749 1.00332 1.02817 1.22967 0.97208 1.00483 1.01402 1.23361 1.03467 1.03758 0.91847 0.92054 0.90324 0.91847 0.81513 0.87984 0.86457 0.77284 0.76795 0.76067 0.95006 0.95731 0.77873 0.93603 0.87303 0.89090 0.89474 0.89845 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 10.35 36.01 0.37 -1.08 16 2 C -0.12 -1.90 6.36 -102.54 -0.65 -2.55 16 3 C -0.02 -0.20 11.82 -16.82 -0.20 -0.40 16 4 N -0.55 -6.09 5.90 -9.11 -0.05 -6.14 16 5 H 0.41 3.00 8.96 -40.82 -0.37 2.64 16 6 C 0.07 0.97 5.67 -81.88 -0.46 0.50 16 7 C -0.08 -0.81 6.01 -29.04 -0.17 -0.99 16 8 C 0.51 6.01 8.09 -10.99 -0.09 5.92 16 9 N -0.86 -6.09 8.87 31.22 0.28 -5.82 16 10 O -0.52 -8.87 16.87 5.55 0.09 -8.78 16 11 C -0.19 -3.18 6.05 -103.35 -0.62 -3.80 16 12 C 0.59 10.90 6.13 -12.59 -0.08 10.83 16 13 O -0.53 -11.54 14.14 5.26 0.07 -11.47 16 14 N -0.70 -11.95 3.05 -54.93 -0.17 -12.12 16 15 C 0.17 2.90 2.59 -67.93 -0.18 2.72 16 16 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 17 C 0.15 2.93 5.80 -4.04 -0.02 2.91 16 18 N -0.73 -18.14 5.43 -59.91 -0.33 -18.47 16 19 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 23 Si 0.90 22.23 29.55 -169.99 -5.02 17.21 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C -0.16 -2.23 5.71 -90.62 -0.52 -2.74 16 28 C -0.18 -2.19 9.68 -26.69 -0.26 -2.45 16 29 C -0.19 -2.60 9.82 -26.70 -0.26 -2.86 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.12 1.10 5.43 -51.93 -0.28 0.82 16 36 H 0.40 1.47 8.83 -40.82 -0.36 1.11 16 37 H 0.40 2.65 8.93 -40.82 -0.36 2.29 16 38 H 0.40 6.76 8.59 -40.82 -0.35 6.41 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.39 10.30 7.33 -40.82 -0.30 10.00 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.11 1.42 8.11 -51.93 -0.42 1.00 16 44 H 0.09 1.08 4.12 -51.93 -0.21 0.87 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.12 2.02 5.01 -51.93 -0.26 1.76 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -37.46 390.00 -8.58 -46.03 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -6.66 Total: 21.69 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -3.39 Total: -1.18 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: 0.45 Total: -69.39 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.17 Total: -20.24 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.46 -8.58 -46.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569319708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.671 kcal (2) G-P(sol) polarization free energy of solvation -37.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds