Wall clock time and date at job start Tue Mar 31 2020 18:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 126.82830 * 2 1 4 4 N 1.36451 * 108.85654 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.85387 * 179.97438 * 4 3 2 6 6 C 1.34657 * 110.29593 * 0.02562 * 4 3 2 7 7 C 1.50698 * 125.80249 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47285 * 265.00083 * 7 6 4 9 9 N 1.34780 * 120.00188 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00172 * 359.97438 * 8 7 6 11 11 C 1.36772 * 108.40053 * 359.97438 * 6 4 3 12 12 C 1.47252 * 126.94811 * 180.02562 * 11 6 4 13 13 O 1.21625 * 120.00420 * 270.00568 * 12 11 6 14 14 N 1.34786 * 119.99768 * 89.99563 * 12 11 6 15 15 C 1.46502 * 119.99919 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.46847 * 325.00195 * 15 14 12 17 17 C 1.53003 * 109.47190 * 205.00527 * 15 14 12 18 18 N 1.46498 * 109.46879 * 54.99902 * 17 15 14 19 19 C 1.36939 * 119.99471 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00517 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99918 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47155 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47131 * 119.99976 * 23 21 19 26 26 H 1.48495 * 109.46952 * 239.99874 * 23 21 19 27 27 C 1.53000 * 109.47297 * 85.00195 * 15 14 12 28 28 C 1.53001 * 117.49632 * 8.74720 * 27 15 14 29 29 C 1.52998 * 117.50007 * 300.08960 * 27 15 14 30 30 H 1.08995 * 109.47279 * 89.97756 * 1 2 3 31 31 H 1.09004 * 109.46727 * 209.97397 * 1 2 3 32 32 H 1.09001 * 109.47360 * 329.97526 * 1 2 3 33 33 H 1.08004 * 125.57593 * 359.75562 * 3 2 1 34 34 H 1.09002 * 109.47307 * 25.00149 * 7 6 4 35 35 H 1.09004 * 109.47420 * 145.00079 * 7 6 4 36 36 H 0.97006 * 119.99889 * 359.97438 * 9 8 7 37 37 H 0.96997 * 120.00085 * 180.02562 * 9 8 7 38 38 H 0.96992 * 120.00045 * 0.02562 * 14 12 11 39 39 H 1.09001 * 109.46759 * 174.99936 * 17 15 14 40 40 H 1.09000 * 109.46910 * 294.99818 * 17 15 14 41 41 H 0.96998 * 120.00231 * 0.02562 * 18 17 15 42 42 H 0.96994 * 119.99707 * 180.02562 * 22 21 19 43 43 H 1.08994 * 115.55227 * 154.41337 * 27 15 14 44 44 H 1.08998 * 117.49810 * 359.97438 * 28 27 15 45 45 H 1.08998 * 117.49716 * 145.01369 * 28 27 15 46 46 H 1.08993 * 117.50387 * 214.97863 * 29 27 15 47 47 H 1.09004 * 117.49406 * 359.97314 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6111 0.6554 -0.0006 5 1 4.3840 1.2416 -0.0011 6 6 3.6657 -0.6900 -0.0015 7 6 4.9226 -1.5213 -0.0029 8 6 5.2724 -1.9007 -1.4187 9 7 6.3654 -2.6498 -1.6653 10 8 4.5699 -1.5328 -2.3364 11 6 2.3865 -1.1740 -0.0010 12 6 1.9751 -2.5879 -0.0012 13 8 1.8047 -3.1717 -1.0545 14 7 1.7875 -3.2353 1.1661 15 6 1.3787 -4.6421 1.1660 16 1 0.7110 -4.8264 0.3243 17 6 0.6513 -4.9620 2.4735 18 7 -0.4643 -4.0295 2.6524 19 6 -1.2647 -4.1240 3.7595 20 1 -1.0732 -4.8856 4.5009 21 6 -2.3222 -3.2408 3.9288 22 7 -2.5558 -2.3129 3.0250 23 14 -3.4136 -3.3691 5.4394 24 1 -2.9439 -4.4876 6.2958 25 1 -3.3504 -2.0984 6.2051 26 1 -4.8144 -3.6237 5.0177 27 6 2.6163 -5.5328 1.0397 28 6 3.9856 -4.8590 1.1479 29 6 3.4850 -5.3624 -0.2082 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3634 0.8898 0.5142 33 1 1.9866 2.1060 -0.0037 34 1 5.7398 -0.9452 0.4313 35 1 4.7618 -2.4243 0.5860 36 1 6.9271 -2.9445 -0.9313 37 1 6.5907 -2.8937 -2.5767 38 1 1.9231 -2.7697 2.0061 39 1 0.2698 -5.9824 2.4367 40 1 1.3449 -4.8633 3.3086 41 1 -0.6365 -3.3458 1.9863 42 1 -3.2945 -1.6956 3.1435 43 1 2.5161 -6.5377 1.4497 44 1 4.0048 -3.7811 1.3087 45 1 4.7863 -5.4207 1.6289 46 1 3.9566 -6.2550 -0.6189 47 1 3.1745 -4.6159 -0.9394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569319708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:45 Heat of formation + Delta-G solvation = -20.521125 kcal Electronic energy + Delta-G solvation = -30289.908194 eV Core-core repulsion = 26280.283259 eV Total energy + Delta-G solvation = -4009.624935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34768 -40.78868 -40.15233 -38.16223 -36.51409 -34.71437 -34.65813 -33.71318 -33.13145 -32.36949 -29.97273 -28.95626 -26.84741 -25.96115 -24.04640 -23.42166 -22.89894 -22.02312 -21.00004 -20.43933 -20.30986 -19.17017 -18.84182 -18.00637 -17.56264 -17.39541 -17.13116 -16.98572 -16.42490 -16.10636 -15.50146 -15.35927 -15.16548 -14.98672 -14.72701 -14.57253 -14.35349 -14.16634 -14.04646 -13.58512 -13.53002 -13.44186 -13.10097 -12.99653 -12.84133 -12.71174 -12.63193 -12.14896 -12.11761 -12.01067 -11.79382 -11.28635 -11.09733 -10.97153 -10.86283 -10.73108 -10.59750 -9.89394 -9.43625 -9.02218 -8.96518 -7.88601 -5.18797 1.11907 1.49730 1.50884 1.60540 1.66175 1.67750 1.69830 2.20809 2.56902 2.59674 2.78049 2.98771 3.44894 3.55928 3.65691 3.94461 4.04247 4.08995 4.16619 4.21064 4.22465 4.28962 4.35573 4.48502 4.55297 4.56885 4.65666 4.73451 4.85640 4.88878 4.91855 5.02417 5.10024 5.17859 5.19982 5.30807 5.35052 5.44213 5.54372 5.66240 5.85777 5.94017 6.04633 6.30845 6.49900 6.68091 6.76601 7.37948 7.39282 7.41541 8.11273 8.35745 9.34134 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.004035 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.264448 B = 6936.875247 C = 8469.152248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.166 4.166 3 C 0.007 3.993 4 N -0.529 5.529 5 H 0.433 0.567 6 C 0.087 3.913 7 C -0.083 4.083 8 C 0.512 3.488 9 N -0.834 5.834 10 O -0.581 6.581 11 C -0.237 4.237 12 C 0.597 3.403 13 O -0.576 6.576 14 N -0.695 5.695 15 C 0.175 3.825 16 H 0.050 0.950 17 C 0.152 3.848 18 N -0.743 5.743 19 C -0.244 4.244 20 H 0.079 0.921 21 C -0.071 4.071 22 N -0.963 5.963 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.299 1.299 27 C -0.170 4.170 28 C -0.154 4.154 29 C -0.191 4.191 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.204 0.796 34 H 0.154 0.846 35 H 0.124 0.876 36 H 0.419 0.581 37 H 0.406 0.594 38 H 0.406 0.594 39 H 0.036 0.964 40 H 0.043 0.957 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.103 0.897 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.901 3.387 -3.137 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.172 4.172 3 C -0.122 4.122 4 N -0.124 5.124 5 H 0.273 0.727 6 C -0.031 4.031 7 C -0.123 4.123 8 C 0.297 3.703 9 N -0.399 5.399 10 O -0.460 6.460 11 C -0.247 4.247 12 C 0.385 3.615 13 O -0.456 6.456 14 N -0.345 5.345 15 C 0.070 3.930 16 H 0.069 0.931 17 C 0.025 3.975 18 N -0.386 5.386 19 C -0.376 4.376 20 H 0.097 0.903 21 C -0.264 4.264 22 N -0.613 5.613 23 Si 0.801 3.199 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.226 1.226 27 C -0.190 4.190 28 C -0.191 4.191 29 C -0.228 4.228 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.220 0.780 34 H 0.172 0.828 35 H 0.142 0.858 36 H 0.251 0.749 37 H 0.237 0.763 38 H 0.241 0.759 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.145 0.855 44 H 0.109 0.891 45 H 0.140 0.860 46 H 0.121 0.879 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 24.294 3.291 -4.142 24.864 hybrid contribution -0.900 0.298 0.468 1.058 sum 23.394 3.589 -3.674 23.951 Atomic orbital electron populations 1.19995 0.90479 1.01993 1.00711 1.20629 0.95155 0.91710 1.09707 1.21832 0.82017 0.99570 1.08811 1.41169 1.08508 1.05190 1.57573 0.72667 1.19371 0.93725 0.84287 1.05691 1.20487 0.95130 1.01710 0.94938 1.20723 0.80479 0.77893 0.91229 1.43607 1.27662 1.54803 1.13826 1.90826 1.51378 1.55815 1.47971 1.20093 0.94265 0.91948 1.18441 1.17728 0.75207 0.85508 0.83050 1.90687 1.52791 1.69068 1.33016 1.45952 1.68275 1.11846 1.08386 1.20513 0.94456 0.80449 0.97611 0.93134 1.21020 0.88949 0.93319 0.94183 1.42544 1.33150 1.37715 1.25230 1.19647 1.06812 1.12003 0.99121 0.90320 1.25536 1.00958 0.98536 1.01375 1.69855 1.32725 1.21723 1.37044 0.85103 0.78208 0.77285 0.79293 1.18923 1.22025 1.22630 1.22608 0.91371 1.00705 1.04291 1.23096 0.96025 1.00816 0.99156 1.23221 1.03947 1.03890 0.91767 0.92800 0.94882 0.90209 0.77956 0.82835 0.85826 0.74894 0.76297 0.75855 0.94654 0.93916 0.79466 0.94208 0.85549 0.89084 0.85971 0.87866 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.74 10.35 71.24 0.74 -2.00 16 2 C -0.17 -5.59 6.36 -18.51 -0.12 -5.70 16 3 C 0.01 0.17 11.82 83.12 0.98 1.15 16 4 N -0.53 -10.41 5.90 -182.72 -1.08 -11.48 16 5 H 0.43 4.64 8.96 -92.71 -0.83 3.81 16 6 C 0.09 2.18 5.67 41.78 0.24 2.42 16 7 C -0.08 -1.37 6.01 29.10 0.17 -1.20 16 8 C 0.51 11.09 8.09 87.65 0.71 11.80 16 9 N -0.83 -9.67 8.87 -173.53 -1.54 -11.21 16 10 O -0.58 -20.11 16.87 -3.04 -0.05 -20.16 16 11 C -0.24 -8.18 6.05 -19.04 -0.12 -8.30 16 12 C 0.60 23.22 6.13 86.61 0.53 23.76 16 13 O -0.58 -26.86 14.14 -4.11 -0.06 -26.92 16 14 N -0.69 -24.56 3.05 -445.94 -1.36 -25.92 16 15 C 0.17 6.31 2.59 44.99 0.12 6.43 16 16 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 17 C 0.15 6.02 5.80 86.38 0.50 6.53 16 18 N -0.74 -38.03 5.43 -343.44 -1.87 -39.90 16 19 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 20 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 21 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 22 N -0.96 -59.38 13.06 21.65 0.28 -59.10 16 23 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 24 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 27 C -0.17 -4.67 5.71 -10.79 -0.06 -4.73 16 28 C -0.15 -3.23 9.68 30.62 0.30 -2.94 16 29 C -0.19 -5.11 9.82 30.62 0.30 -4.81 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.20 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.12 1.94 5.43 -2.39 -0.01 1.93 16 36 H 0.42 1.47 8.83 -92.70 -0.82 0.65 16 37 H 0.41 4.55 8.93 -92.71 -0.83 3.73 16 38 H 0.41 13.96 8.59 -92.71 -0.80 13.16 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.37 21.02 7.33 -92.71 -0.68 20.34 16 42 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.13 3.03 8.11 -2.39 -0.02 3.01 16 44 H 0.09 1.93 4.12 -2.39 -0.01 1.92 16 45 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.10 2.31 8.14 -2.39 -0.02 2.30 16 47 H 0.08 2.93 5.01 -2.39 -0.01 2.91 16 Total: -1.00 -88.41 390.00 -0.92 -89.33 By element: Atomic # 1 Polarization: 53.94 SS G_CDS: -2.88 Total: 51.06 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 5.60 Total: 6.05 kcal Atomic # 7 Polarization: -142.04 SS G_CDS: -5.56 Total: -147.60 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -0.11 Total: -47.08 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -88.41 -0.92 -89.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569319708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.809 kcal (2) G-P(sol) polarization free energy of solvation -88.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds